Tan0009110 (gene) Snake gourd v1

Overview


Name	Tan0009110
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein ligase RNF126-like
Location	LG01: 97685749 .. 97686279 (+)
RNA-Seq Expression	Tan0009110
Synteny	Tan0009110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTCTGGAACTCCGATTGGGGCATTCGAGCCATCTAATCTCACGATCTTCTCACCAAATTCTCCAACGAAGTCCCTCAACTCCAATCGCTACTGCTCTGTTTCCTTTGTCTCTGCGCGACCTTGAAGACCCACCGTTTCTCTCCCACTTCTACGTCATTCATTTTCTAACTTCCTTTAACCTCCCCATCGCCGTTTCTGATGCAATCTTTGAGAAGATCGCCTTCTTCGCCCACCACTTGGCTGCCGGAAACCTCGATCGGAACTTCCACATCAACGTCGCTATCGATTTCATTCAAAATCTATGGGTGGACCTGGACCCAGAAGATTCTCCGGCAGTGACGAATGGGGCGCCCGCGTCGGCCATTGAGAGACTGAAGAACCAGAAATTCGATGGGTTTGGACTCGAAGAAGTGGGAGATGATTGCAGTGTTTGTTGCGATGAACTTAACGCTGAAAAGGAGGTGACAAGAATCCCTGTGGTCACGTGTATCATAAATCATGTATTCTCACTTGGCTTCAGATGA

mRNA sequence

ATGCAATTTCTGGAACTCCGATTGGGGCATTCGAGCCATCTAATCTCACGATCTTCTCACCAAATTCTCCAACGAAGTCCCTCAACTCCAATCGCTACTGCTCTGTTTCCTTTGTCTCTGCGCGACCTTGAAGACCCACCGTTTCTCTCCCACTTCTACGTCATTCATTTTCTAACTTCCTTTAACCTCCCCATCGCCGTTTCTGATGCAATCTTTGAGAAGATCGCCTTCTTCGCCCACCACTTGGCTGCCGGAAACCTCGATCGGAACTTCCACATCAACGTCGCTATCGATTTCATTCAAAATCTATGGGTGGACCTGGACCCAGAAGATTCTCCGGCAGTGACGAATGGGGCGCCCGCGTCGGCCATTGAGAGACTGAAGAACCAGAAATTCGATGGGTTTGGACTCGAAGAAGTGGGAGATGATTGCAGTGTTTGTTGCGATGAACTTAACGCTGAAAAGGAGGTGACAAGAATCCCTGTGGTCACGTGTATCATAAATCATGTATTCTCACTTGGCTTCAGATGA

Coding sequence (CDS)

ATGCAATTTCTGGAACTCCGATTGGGGCATTCGAGCCATCTAATCTCACGATCTTCTCACCAAATTCTCCAACGAAGTCCCTCAACTCCAATCGCTACTGCTCTGTTTCCTTTGTCTCTGCGCGACCTTGAAGACCCACCGTTTCTCTCCCACTTCTACGTCATTCATTTTCTAACTTCCTTTAACCTCCCCATCGCCGTTTCTGATGCAATCTTTGAGAAGATCGCCTTCTTCGCCCACCACTTGGCTGCCGGAAACCTCGATCGGAACTTCCACATCAACGTCGCTATCGATTTCATTCAAAATCTATGGGTGGACCTGGACCCAGAAGATTCTCCGGCAGTGACGAATGGGGCGCCCGCGTCGGCCATTGAGAGACTGAAGAACCAGAAATTCGATGGGTTTGGACTCGAAGAAGTGGGAGATGATTGCAGTGTTTGTTGCGATGAACTTAACGCTGAAAAGGAGGTGACAAGAATCCCTGTGGTCACGTGTATCATAAATCATGTATTCTCACTTGGCTTCAGATGA

Protein sequence

MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTSFNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDPEDSPAVTNGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIPVVTCIINHVFSLGFR

Homology

[Close]

BLAST of Tan0009110 vs. NCBI nr
Match: XP_023533113.1 (RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.5 bits (537), Expect = 6.0e-51
Identity = 109/165 (66.06%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQF+ELRLGHSSHLISRSS QILQ++PSTP+  ALFP  LRDL DPPFLS  +V+ FL+S
Sbjct: 30  MQFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLLDPPFLSKSHVLRFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F +PIAV + IF +I+ FA HLAAGN+D NFHI V +D I+ +WVDLDP    E SPA  
Sbjct: 90  FTIPIAVCNIIFAEISSFALHLAAGNVDLNFHIVVDVDAIEMIWVDLDPFLIEEYSPAAM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ QKFDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEKEGDCSVCCEALKGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. NCBI nr
Match: KAG6605228.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.4 bits (529), Expect = 5.1e-50
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQF+ELRLGHSSHLISRSS QILQ+SPSTP+  +LFP  LRDLE PPFL +++V+HFL+S
Sbjct: 30  MQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLEHPPFLPNYHVLHFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++PIA  D I+++I+ FA  LAA N+D NFHI V +D I+ +WVDLDP    E SP   
Sbjct: 90  FSIPIAACDIIYQEISSFALRLAADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPPM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ QKFDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. NCBI nr
Match: XP_023006824.1 (RING-H2 finger protein ATL16-like [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 103/165 (62.42%), Postives = 127/165 (76.97%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQF+ELRLGHSSHLISRSS QILQ+SPSTP+  +LFP  LRDLE PPFL +++V+HFL+S
Sbjct: 30  MQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLEHPPFLPNYHVLHFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++P+A  D I+++I+ FA  L A N+D NFHI V +D I+ +WVDLDP    E SP   
Sbjct: 90  FSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPAM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ QKFDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. NCBI nr
Match: XP_023006826.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           +Q LELRLGHS+HLISRSS QILQ++PSTPI  ALFP  LRDL+ PPFLS+ YV+ FL+S
Sbjct: 30  IQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++PIA  D I+E+I+ FA  LAAGN+D NFHI V +D  + +WVDLDP    E SPA  
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ QKFDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. NCBI nr
Match: XP_022947933.1 (E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ubiquitin-protein ligase RNF126-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 7.4e-49
Identity = 104/165 (63.03%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQ LELRLG+S+HLISRSS QILQ++P+TP+  ALFP  LRDL+ PPFLS+ YV+ FL+S
Sbjct: 30  MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++PIA  D I+E+I+ FA  LAAGN+D NFHI V +D I+ +WVDLDP    E SPA  
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ Q+FDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. ExPASy TrEMBL
Match: A0A6J1L387 (RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.5e-50
Identity = 103/165 (62.42%), Postives = 127/165 (76.97%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQF+ELRLGHSSHLISRSS QILQ+SPSTP+  +LFP  LRDLE PPFL +++V+HFL+S
Sbjct: 30  MQFVELRLGHSSHLISRSSRQILQQSPSTPLGESLFPFILRDLEHPPFLPNYHVLHFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++P+A  D I+++I+ FA  L A N+D NFHI V +D I+ +WVDLDP    E SP   
Sbjct: 90  FSIPVAACDIIYQEISSFALRLTADNVDLNFHIVVDVDAIEMIWVDLDPFLVEEYSPPAM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ QKFDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALRGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. ExPASy TrEMBL
Match: A0A6J1KYV1 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499496 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.5e-50
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           +Q LELRLGHS+HLISRSS QILQ++PSTPI  ALFP  LRDL+ PPFLS+ YV+ FL+S
Sbjct: 30  IQLLELRLGHSTHLISRSSRQILQQTPSTPIGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++PIA  D I+E+I+ FA  LAAGN+D NFHI V +D  + +WVDLDP    E SPA  
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNMDLNFHIVVEVDVNEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ QKFDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQKFDGLREEEEEGDCSVCCEALKGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. ExPASy TrEMBL
Match: A0A6J1G7Z5 (E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC111451666 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.6e-49
Identity = 104/165 (63.03%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQ LELRLG+S+HLISRSS QILQ++P+TP+  ALFP  LRDL+ PPFLS+ YV+ FL+S
Sbjct: 30  MQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++PIA  D I+E+I+ FA  LAAGN+D NFHI V +D I+ +WVDLDP    E SPA  
Sbjct: 90  FSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVEEYSPAEM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ Q+FDG   EE   DCSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIP 194

[Close]

BLAST of Tan0009110 vs. ExPASy TrEMBL
Match: A0A6J1G809 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111451600 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48
Identity = 106/165 (64.24%), Postives = 128/165 (77.58%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQF+ELRLGHSSHLISRSS QILQ++PSTP+  ALFP  LRDL  PPFLS  +V+ FL+S
Sbjct: 30  MQFVELRLGHSSHLISRSSRQILQQTPSTPMGDALFPFILRDLLHPPFLSKSHVLRFLSS 89

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDP----EDSPAVT 120
           F++PIAV + IF +I+ FA HLAAGN+D NFHI V +D I+ +WVDLDP    E SP   
Sbjct: 90  FSIPIAVCNIIFVEISSFALHLAAGNVDLNFHIVVDVDAIEMIWVDLDPFLIEEYSPPAM 149

Query: 121 NGAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIP 162
           NGAPASAIERL+ Q+FDG   EE G +CSVCC+ L  E+EV+RIP
Sbjct: 150 NGAPASAIERLQRQEFDGLREEEEG-ECSVCCEALKGEEEVSRIP 193

[Close]

BLAST of Tan0009110 vs. ExPASy TrEMBL
Match: A0A6J1ES83 (uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC111435504 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 96/174 (55.17%), Postives = 121/174 (69.54%), Query Frame = 0


Query: 1   MQFLELRLGHSSHLISRSSHQILQRSPSTPIATALFPLSLRDLEDPPFLSHFYVIHFLTS 60
           MQ+ ELRL +S+  +SRSS+Q+LQ++P T I+ AL PL LRDL+ PPFLSHF V+ FL++
Sbjct: 95  MQYAELRLAYSNQFVSRSSNQLLQQTPQTLISDALLPLFLRDLQHPPFLSHFLVLQFLST 154

Query: 61  FNLPIAVSDAIFEKIAFFAHHLAAGNLDRNFHINVAIDFIQNLWVDLDPE---DSPAVTN 120
           FN+  A S AIF+ IA FA  LAAG+LDRNFHI V +D +Q +WVDLD +   + P    
Sbjct: 155 FNISTASSHAIFDDIATFALELAAGDLDRNFHIIVYLDLVQTIWVDLDLDLDLEMPPKQE 214

Query: 121 GAPASAIERLKNQKFDGFGLEEVGDDCSVCCDELNAEKEVTRIPVVTCIINHVF 172
            APAS +ERL  ++FDGF  EE   DCSVCCDEL  E EV R+P       HVF
Sbjct: 215 PAPASVMERLMREEFDGFRPEE-ARDCSVCCDELGGETEVRRLP-----CGHVF 262

The following BLAST results are available for this feature:

BLAST of Tan0009110 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0009110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533113.1	6.0e-51	66.06	RING-H2 finger protein ATL1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6605228.1	5.1e-50	63.64	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023006824.1	1.1e-49	62.42	RING-H2 finger protein ATL16-like [Cucurbita maxima]	[more]
XP_023006826.1	1.1e-49	64.24	E3 ubiquitin-protein ligase RNF126-like [Cucurbita maxima]	[more]
XP_022947933.1	7.4e-49	63.03	E3 ubiquitin-protein ligase RNF126-like [Cucurbita moschata] >XP_023532920.1 E3 ...	[more]

BLAST of Tan0009110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L387	5.5e-50	62.42	RING-H2 finger protein ATL16-like OS=Cucurbita maxima OX=3661 GN=LOC111499493 PE...	[more]
A0A6J1KYV1	5.5e-50	64.24	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita maxima OX=3661 GN=LOC111499...	[more]
A0A6J1G7Z5	3.6e-49	63.03	E3 ubiquitin-protein ligase RNF126-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1G809	1.0e-48	64.24	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1ES83	1.2e-41	55.17	uncharacterized protein LOC111435504 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]

BLAST of Tan0009110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0009110.1	Tan0009110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0061630	ubiquitin protein ligase activity