Tan0008906 (gene) Snake gourd v1

Overview


Name	Tan0008906
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 1803570 .. 1804022 (+)
RNA-Seq Expression	Tan0008906
Synteny	Tan0008906

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGCGGCTAGAAATGAACCAAATGTTAAAGAAGAACAAGAATTGAGAGAAGAAAGTGAAGGACAAGCTAGTCAAAACCCAGAGTCGAGTTCGAGTTCGTCGATTCTACCCGAGTTGAATCTTCTTTTTGTGCTTCTTTCATTGATTTCTCCAAATTCGAATGAAGATTCAAATGGTGAAGATGGTGAATTGATGAGAACAAAAGAGCTTGAAGCTAGTACAACTTATAATATTGCACGATCGAGTGTAAAAAAGAAAGATGTGATTGAAGCCAAGCCAGAAGGTCGACGAGTAACTCAAAGGTTTCATACAACAATAAAGGATCATAGGTAATTTATCTTCTTTTTACCATCCATCATTATATTAGTAATTTCTCTTGTTCCTTTGAAAAAATTACCTCAAGTTAACTGTTATTTTTTTGCATACAGGCATGGCAGAAAAATGTGA

mRNA sequence

ATGGTGGGAGCGGCTAGAAATGAACCAAATGTTAAAGAAGAACAAGAATTGAGAGAAGAAAGTGAAGGACAAGCTAGTCAAAACCCAGAGTCGAGTTCGAGTTCGTCGATTCTACCCGAGTTGAATCTTCTTTTTGTGCTTCTTTCATTGATTTCTCCAAATTCGAATGAAGATTCAAATGGTGAAGATGGTGAATTGATGAGAACAAAAGAGCTTGAAGCTAGTACAACTTATAATATTGCACGATCGAGTGTAAAAAAGAAAGATGTGATTGAAGCCAAGCCAGAAGGTCGACGAGTAACTCAAAGGTTTCATACAACAATAAAGGATCATAGGCATGGCAGAAAAATGTGA

Coding sequence (CDS)

ATGGTGGGAGCGGCTAGAAATGAACCAAATGTTAAAGAAGAACAAGAATTGAGAGAAGAAAGTGAAGGACAAGCTAGTCAAAACCCAGAGTCGAGTTCGAGTTCGTCGATTCTACCCGAGTTGAATCTTCTTTTTGTGCTTCTTTCATTGATTTCTCCAAATTCGAATGAAGATTCAAATGGTGAAGATGGTGAATTGATGAGAACAAAAGAGCTTGAAGCTAGTACAACTTATAATATTGCACGATCGAGTGTAAAAAAGAAAGATGTGATTGAAGCCAAGCCAGAAGGTCGACGAGTAACTCAAAGGTTTCATACAACAATAAAGGATCATAGGCATGGCAGAAAAATGTGA

Protein sequence

MVGAARNEPNVKEEQELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNEDSNGEDGELMRTKELEASTTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM

Homology

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BLAST of Tan0008906 vs. NCBI nr
Match: KAG6597110.1 (hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-32
Identity = 84/117 (71.79%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 7   NEPNVKEEQELREESEGQASQNPES------SSSSSILPELNLLFVLLSLISPNSNEDSN 66
           NE ++KEEQE+R++S+G+ASQN  S       SSSS LPE+NL+FVLLSL+   S+EDSN
Sbjct: 8   NESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLL---SHEDSN 67

Query: 67  GEDGELMRTKELEASTTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM 118
           GE+GEL + KE+EA TTYNIARSSVKKKDVIEAKPE RRV QRFHTTIKDHRHGRKM
Sbjct: 68  GEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPERRRVAQRFHTTIKDHRHGRKM 121

[Close]

BLAST of Tan0008906 vs. NCBI nr
Match: KAG7028573.1 (hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-31
Identity = 82/117 (70.09%), Postives = 97/117 (82.91%), Query Frame = 0


Query: 7   NEPNVKEEQELREESEGQASQNPES------SSSSSILPELNLLFVLLSLISPNSNEDSN 66
           NE ++KEEQE+R++S+G+ASQN  S       SSSS LPE+NL+FVLLSL+   S+E+SN
Sbjct: 7   NESDIKEEQEMRDDSKGEASQNMGSGSGSGLDSSSSFLPEMNLVFVLLSLL---SHENSN 66

Query: 67  GEDGELMRTKELEASTTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM 118
           GE+GEL + KE+EA TTYNIARSSVKKKDVIEAKPE  RV QRFHTTIKDHRHGRKM
Sbjct: 67  GEEGELTKAKEVEAITTYNIARSSVKKKDVIEAKPERPRVAQRFHTTIKDHRHGRKM 120

[Close]

BLAST of Tan0008906 vs. NCBI nr
Match: KGN56466.1 (hypothetical protein Csa_011060 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-26
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MVGAARNEPNVKEEQELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNEDSN 60
           MV    NE + K++QE+RE+         ESSSSSS LP+LNLLFV LSLISPN+NEDSN
Sbjct: 1   MVEGMGNENDFKDKQEMRED-HNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSN 60

Query: 61  GEDGELMRTKELEASTTYNIARSSVKKKDVIEAKPEGRR-VTQRFHTTIKDHRHGRKM 118
             +G  M+ KE+E STTYNIA+SS++KKDVIEA+ E RR V QR HTTIKDHRHGRKM
Sbjct: 61  DGNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM 117

[Close]

BLAST of Tan0008906 vs. NCBI nr
Match: XP_007147280.1 (hypothetical protein PHAVU_006G110700g [Phaseolus vulgaris] >ESW19274.1 hypothetical protein PHAVU_006G110700g [Phaseolus vulgaris])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 6   RNEPNVKEEQELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNEDSNGEDGE 65
           + E   + E ++ EE   + + N  S   ++ L ELN+L VLLSL   +S+E    E+ E
Sbjct: 5   QQEGETESEIDMLEECGEEENGNSNSHMPNTSLAELNMLLVLLSLFYFSSDECIEHEESE 64

Query: 66  LMRTKELEASTTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM 118
            M+TK+    T   + R   KK+   E K   + ++ RF TT+KD RHGRKM
Sbjct: 65  QMKTKDEVTVTRTCVTRLQRKKRGRHEPKLGRKPISSRFQTTVKDSRHGRKM 116

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BLAST of Tan0008906 vs. NCBI nr
Match: XP_025015491.1 (uncharacterized protein LOC107262320 isoform X2 [Ricinus communis])

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-04
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 15  QELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNED--SNGEDGELMRTKEL 74
           QE REE E           +S  L ELNL+ ++LSL S +S ED  S  E+ E   TK+ 
Sbjct: 25  QESREERESDDDYELPMQPNSKFLSELNLIVMVLSLYSLSSEEDCMSCTEEEETKSTKDK 84

Query: 75  EA---STTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM 118
           EA   + + + AR+  + +D+ E +P  RR  QRF   IKD RHGRKM
Sbjct: 85  EAKAEALSRSHARNRYRDRDIHEFRPLARR-AQRFQPMIKDSRHGRKM 131

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BLAST of Tan0008906 vs. ExPASy TrEMBL
Match: A0A0A0L8Q3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.7e-27
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MVGAARNEPNVKEEQELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNEDSN 60
           MV    NE + K++QE+RE+         ESSSSSS LP+LNLLFV LSLISPN+NEDSN
Sbjct: 1   MVEGMGNENDFKDKQEMRED-HNNGEDIVESSSSSSFLPDLNLLFVFLSLISPNTNEDSN 60

Query: 61  GEDGELMRTKELEASTTYNIARSSVKKKDVIEAKPEGRR-VTQRFHTTIKDHRHGRKM 118
             +G  M+ KE+E STTYNIA+SS++KKDVIEA+ E RR V QR HTTIKDHRHGRKM
Sbjct: 61  DGNGVSMKMKEIEDSTTYNIAKSSIRKKDVIEAQHESRRKVPQRLHTTIKDHRHGRKM 117

[Close]

BLAST of Tan0008906 vs. ExPASy TrEMBL
Match: V7BMR4 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G110700g PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.1e-05
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 6   RNEPNVKEEQELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNEDSNGEDGE 65
           + E   + E ++ EE   + + N  S   ++ L ELN+L VLLSL   +S+E    E+ E
Sbjct: 5   QQEGETESEIDMLEECGEEENGNSNSHMPNTSLAELNMLLVLLSLFYFSSDECIEHEESE 64

Query: 66  LMRTKELEASTTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM 118
            M+TK+    T   + R   KK+   E K   + ++ RF TT+KD RHGRKM
Sbjct: 65  QMKTKDEVTVTRTCVTRLQRKKRGRHEPKLGRKPISSRFQTTVKDSRHGRKM 116

[Close]

BLAST of Tan0008906 vs. ExPASy TrEMBL
Match: A0A251QHP0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G183900 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 8   EPNVKEEQELREESEGQASQNPESSSSSSILPELNLLFVLLSLISPNSNEDSNGEDGELM 67
           +  V+E++E+ +  E  ASQ   +S  ++   ELNLL V LSLIS ++ E  N  + E  
Sbjct: 13  DDEVQEDREMEQNEESVASQELPNSVFTA---ELNLLIVFLSLISLSTEESLNSVEREPE 72

Query: 68  RTKELEASTTYNIARSSVKKKDVIEAKPEGRRVTQRFHTTIKDHRHGRKM 118
           R  +   +    I R   KK++  EAKP  RR TQRF T I+D RHGR++
Sbjct: 73  RRNDGAKA----IKRLQKKKQETDEAKPVRRR-TQRFQTRIRDSRHGRRV 114

The following BLAST results are available for this feature:

BLAST of Tan0008906 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008906 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597110.1	2.4e-32	71.79	hypothetical protein SDJN03_10290, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028573.1	6.0e-31	70.09	hypothetical protein SDJN02_09754, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN56466.1	1.2e-26	64.41	hypothetical protein Csa_011060 [Cucumis sativus]	[more]
XP_007147280.1	1.3e-04	36.61	hypothetical protein PHAVU_006G110700g [Phaseolus vulgaris] >ESW19274.1 hypothet...	[more]
XP_025015491.1	2.2e-04	41.67	uncharacterized protein LOC107262320 isoform X2 [Ricinus communis]	[more]

BLAST of Tan0008906 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Q3	5.7e-27	64.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G120450 PE=4 SV=1	[more]
V7BMR4	6.1e-05	36.61	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_006G110700g PE=4 ...	[more]
A0A251QHP0	8.9e-04	40.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G183900 PE=4 SV=1	[more]

BLAST of Tan0008906 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008906.1	Tan0008906.1	mRNA