Tan0008881 (gene) Snake gourd v1

Overview
NameTan0008881
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionF-box/WD repeat-containing protein 4
LocationLG04: 83108845 .. 83109575 (+)
RNA-Seq ExpressionTan0008881
SyntenyTan0008881
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGAAAATTTTCCCTGTGGACCCCAGCTACCCGCTCACTACCAGTCTTCCATCTCCATTTGCATCAACTCTATTCTGCAACCTTCCAGACCTCTCTCTCTCATCTCTTTCTCTCTCCTCCAAAAATACAGACCACAAAATCCAGAGTTTCGAACCCTAGAGCTACAATTTCCTTTGAATTTTACCGGTGATTGTAAGATTCCTTCATCTCTGTGAGCGATGTTGCAGTTCTTCTTTACGGTGGCTTTTTCGGCAGTTCCTTTGACTCTTTACGTTCCGCCGCTCCGCAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATATTTCGGGAGTCGAGAACGTACACCAATCGGGTGTATCCGCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAGATGATTTTTTTTTTTTTCATCTCTAGATTTCGAAGTTCAGGACGCTGATCTCTCTGTATATATTCTTCGATTCTCTTGTTTCTGTCTTTCGTTTGATAAGATTTGGATGAGTGTGGTTATGGTGCTGATTTAGTCGTTGCGGAATTCTGTTGTAAATTGGTGAATACGACATGTAAGAGGATGCGTTTCAAGTTAATTTCAGAAGAATAAAGAGATGATGTTCATGTTAATATGTGCATAGTGATGTTCTGTTTCTCACGTTCCATTCAATTTTATTCTGTGCAGCACCGTATATATTCTTCGATTCTCTTG

mRNA sequence

CGGAAAATTTTCCCTGTGGACCCCAGCTACCCGCTCACTACCAGTCTTCCATCTCCATTTGCATCAACTCTATTCTGCAACCTTCCAGACCTCTCTCTCTCATCTCTTTCTCTCTCCTCCAAAAATACAGACCACAAAATCCAGAGTTTCGAACCCTAGAGCTACAATTTCCTTTGAATTTTACCGGTGATTGTAAGATTCCTTCATCTCTGTGAGCGATGTTGCAGTTCTTCTTTACGGTGGCTTTTTCGGCAGTTCCTTTGACTCTTTACGTTCCGCCGCTCCGCAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATATTTCGGGAGTCGAGAACGTACACCAATCGGGTGTATCCGCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAGATGATTTTTTTTTTTTTCATCTCTAGATTTCGAAGTTCAGGACGCTGATCTCTCTGTATATATTCTTCGATTCTCTTGTTTCTGTCTTTCGTTTGATAAGATTTGGATGAGTGTGGTTATGGTGCTGATTTAGTCGTTGCGGAATTCTGTTGTAAATTGGTGAATACGACATGTAAGAGGATGCGTTTCAAGTTAATTTCAGAAGAATAAAGAGATGATGTTCATGTTAATATGTGCATAGTGATGTTCTGTTTCTCACGTTCCATTCAATTTTATTCTGTGCAGCACCGTATATATTCTTCGATTCTCTTG

Coding sequence (CDS)

ATGTTGCAGTTCTTCTTTACGGTGGCTTTTTCGGCAGTTCCTTTGACTCTTTACGTTCCGCCGCTCCGCAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATATTTCGGGAGTCGAGAACGTACACCAATCGGGTGTATCCGCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAG

Protein sequence

MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDCVLCSTR
Homology
[Close]
BLAST of Tan0008881 vs. NCBI nr
Match: XP_011651782.1 (uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED: uncharacterized protein LOC107991865 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 7.8e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]
BLAST of Tan0008881 vs. NCBI nr
Match: XP_038905300.1 (uncharacterized protein LOC120091370 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLY+PPLRSFNLFVETMEEI RESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYIPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]
BLAST of Tan0008881 vs. NCBI nr
Match: KAG6581581.1 (hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]
BLAST of Tan0008881 vs. NCBI nr
Match: XP_022934952.1 (uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 uncharacterized protein LOC111481923 [Cucurbita maxima] >XP_023527102.1 uncharacterized protein LOC111790442 [Cucurbita pepo subsp. pepo] >KAG7018085.1 hypothetical protein SDJN02_19951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]
BLAST of Tan0008881 vs. NCBI nr
Match: KAE8650936.1 (hypothetical protein Csa_001741 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCST 66
          +LCST
Sbjct: 61 ILCST 65

[Close]
BLAST of Tan0008881 vs. ExPASy TrEMBL
Match: A0A0A0LD25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]
BLAST of Tan0008881 vs. ExPASy TrEMBL
Match: A0A1S4E3E9 (uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]
BLAST of Tan0008881 vs. ExPASy TrEMBL
Match: A0A6J1J7E0 (uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.5e-28
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]
BLAST of Tan0008881 vs. ExPASy TrEMBL
Match: A0A6J1F484 (uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC111441965 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.5e-28
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEI RESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]
BLAST of Tan0008881 vs. ExPASy TrEMBL
Match: A0A6J1DEC8 (uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020277 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-27
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQFFFT+AFSAVPLTLYVPPLRS NLFVETMEEI RESRTYTNRVYPRARHVWLRVLDC
Sbjct: 1  MLQFFFTLAFSAVPLTLYVPPLRSLNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          VLCSTR
Sbjct: 61 VLCSTR 66

[Close]
BLAST of Tan0008881 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-17
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEIFRESRTYTNRVYPRARHVWLRVLDC 60
          MLQ FFT+AFSA PLTLY+PP+R   +FVETMEE+  E R Y+ R++PRAR  W R+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VLCSTR 67
             S+R
Sbjct: 61 FFSSSR 66

The following BLAST results are available for this feature:
BLAST of Tan0008881 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0008881 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651782.17.8e-2896.97uncharacterized protein LOC105434940 [Cucumis sativus] >XP_016902752.1 PREDICTED... [more]
XP_038905300.11.0e-2795.45uncharacterized protein LOC120091370 [Benincasa hispida][more]
KAG6581581.11.7e-2796.97hypothetical protein SDJN03_21583, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022934952.11.7e-2796.97uncharacterized protein LOC111441965 [Cucurbita moschata] >XP_022983303.1 unchar... [more]
KAE8650936.13.0e-2796.92hypothetical protein Csa_001741 [Cucumis sativus][more]
BLAST of Tan0008881 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD253.8e-2896.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697900 PE=4 SV=1[more]
A0A1S4E3E93.8e-2896.97uncharacterized protein LOC107991865 OS=Cucumis melo OX=3656 GN=LOC107991865 PE=... [more]
A0A6J1J7E08.5e-2896.97uncharacterized protein LOC111481923 OS=Cucurbita maxima OX=3661 GN=LOC111481923... [more]
A0A6J1F4848.5e-2896.97uncharacterized protein LOC111441965 OS=Cucurbita moschata OX=3662 GN=LOC1114419... [more]
A0A6J1DEC83.2e-2795.45uncharacterized protein LOC111020277 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
BLAST of Tan0008881 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52105.11.0e-1760.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36616:SF4BNAC07G32700D PROTEINcoord: 1..65
NoneNo IPR availablePANTHERPTHR36616BNAC07G32700D PROTEINcoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008881.1Tan0008881.1mRNA