Tan0008828 (gene) Snake gourd v1

Overview


Name	Tan0008828
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 6062100 .. 6062679 (-)
RNA-Seq Expression	Tan0008828
Synteny	Tan0008828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTAAACCAAACAAGTTTTTTGTGCAAGTCTTGAAAGAAGAAGAAAATTAGATGGAGGGTTTAATTCCATATCTTTTCCATGCATTGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTTGGTTCAAGCAGGAGCTACCATCTCCTGATCAACGATGAGTCGTCTCATCGACGAACCCGATCGGACTTTCAGCCACCGACGTTCGAGTTCTCGGACCAACGATCGGTGCACGAGTTCACACATTCTCGCAGCATTAGTCAGGGCTTTGGATCATCTGCCAGACCAAGTAATGGATTTGATTCTAACTTCTCTGTCTATCCTGGCCAGGCTTCAAATAAGCCTGCTTATTATGGTAATCCTCGTCGCTGAGAAAATAGCAAACTGGGAAGGATTCTTCAGAAGTTACAAGTGTTAAAAGTTTTTTTTTTTTTTTCTTTCAAATTTGTTTGATTGTAATGTTGGTGAAGATCAATGTGTAAAGAGGTGGATCTCCATGAAATTGGTGGGCAGCCATCTTCTTTGACTTTGAAAATTGTACATTGAATTGTTGGAATTATTCTTTTATTCGAC

mRNA sequence

CATTAAACCAAACAAGTTTTTTGTGCAAGTCTTGAAAGAAGAAGAAAATTAGATGGAGGGTTTAATTCCATATCTTTTCCATGCATTGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTTGGTTCAAGCAGGAGCTACCATCTCCTGATCAACGATGAGTCGTCTCATCGACGAACCCGATCGGACTTTCAGCCACCGACGTTCGAGTTCTCGGACCAACGATCGGTGCACGAGTTCACACATTCTCGCAGCATTAGTCAGGGCTTTGGATCATCTGCCAGACCAAGTAATGGATTTGATTCTAACTTCTCTGTCTATCCTGGCCAGGCTTCAAATAAGCCTGCTTATTATGGTAATCCTCGTCGCTGAGAAAATAGCAAACTGGGAAGGATTCTTCAGAAGTTACAAGTGTTAAAAGTTTTTTTTTTTTTTTCTTTCAAATTTGTTTGATTGTAATGTTGGTGAAGATCAATGTGTAAAGAGGTGGATCTCCATGAAATTGGTGGGCAGCCATCTTCTTTGACTTTGAAAATTGTACATTGAATTGTTGGAATTATTCTTTTATTCGAC

Coding sequence (CDS)

ATGGAGGGTTTAATTCCATATCTTTTCCATGCATTGAAGAAGCAAAAGCCACGCCACAGCTACAGAAGCCAATCCGTTGGTTCAAGCAGGAGCTACCATCTCCTGATCAACGATGAGTCGTCTCATCGACGAACCCGATCGGACTTTCAGCCACCGACGTTCGAGTTCTCGGACCAACGATCGGTGCACGAGTTCACACATTCTCGCAGCATTAGTCAGGGCTTTGGATCATCTGCCAGACCAAGTAATGGATTTGATTCTAACTTCTCTGTCTATCCTGGCCAGGCTTCAAATAAGCCTGCTTATTATGGTAATCCTCGTCGCTGA

Protein sequence

MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLINDESSHRRTRSDFQPPTFEFSDQRSVHEFTHSRSISQGFGSSARPSNGFDSNFSVYPGQASNKPAYYGNPRR

Homology

[Close]

BLAST of Tan0008828 vs. NCBI nr
Match: XP_038905929.1 (uncharacterized protein LOC120091851 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 89/108 (82.41%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLI-NDESSHRRTRSDFQPPTFEFSDQ 60
           MEGLIPYLFHA+KKQKPRH+YRSQSVGSSRSYHLLI NDESSHRRTRSDFQPP  EFSDQ
Sbjct: 1   MEGLIPYLFHAMKKQKPRHNYRSQSVGSSRSYHLLITNDESSHRRTRSDFQPPALEFSDQ 60

Query: 61  RSVHEFTHSRSISQG-FGSSARPSNGFDSNFSVYPGQASNKPAYYGNP 107
           RS HE  HSRS+S+G FGSS RPS GF+S FS YPGQ +NKP YYGNP
Sbjct: 61  RSTHELMHSRSVSKGAFGSSTRPSYGFESGFSSYPGQVTNKPTYYGNP 108

[Close]

BLAST of Tan0008828 vs. NCBI nr
Match: KGN52765.1 (hypothetical protein Csa_015267 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQPPTFEFSD 60
           MEGLIPYLFHA+KKQKPRHSYRSQSVGSSRSYHLLI  NDESSHRRTRSD+QPPTFEF D
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSVHEFTHSRSISQ-GFGSSARPSNGFDSNFSVYPGQASNKPAY-YGNPRR 109
           QRS  E THSRS+++  FGSS RPSNGF+SNF  Y GQ SN+PAY YGNP R
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of Tan0008828 vs. NCBI nr
Match: KAA0044340.1 (putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-37
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQPPTFEFSD 60
           MEGLIPYLFHA+KKQKPRHSYRSQSVGSSRSYHLLI  NDESSHRRTRSD+QPPTFEF D
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  -QRSVHEFTHSRSISQ-GFGSSARPSNGFDSNFSVYPGQASNKPAY-YGNPRR 109
            QR   E THSRS+++  FGSS RPSNGF+SNF  Y GQ SN+PAY YGNP R
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of Tan0008828 vs. NCBI nr
Match: KAG6576920.1 (hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 72/99 (72.73%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1  MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLINDESSHRRTRSDFQPPTFEFSDQR 60
          MEGLIPYLFHA+KKQKPRH YRSQSVGSSRSYHLL NDESSHRRTRSDFQPP FE+ DQR
Sbjct: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQPPRFEYLDQR 60

Query: 61 SVHEFTHSRSISQG-FGSSARPSNGFDSNFSVYPGQASN 99
          S HE  HSRS+S+G FGSS             Y GQ SN
Sbjct: 61 SGHELMHSRSVSKGAFGSS-------------YAGQVSN 86

[Close]

BLAST of Tan0008828 vs. NCBI nr
Match: KAG7014945.1 (NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 5.8e-28
Identity = 72/99 (72.73%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1  MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLINDESSHRRTRSDFQPPTFEFSDQR 60
          MEGLIPYLFHA+KKQKPRH YRSQSVGSSRSYHLL NDESSHRRTRSDFQPP FE+ DQR
Sbjct: 1  MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQPPRFEYLDQR 60

Query: 61 SVHEFTHSRSISQG-FGSSARPSNGFDSNFSVYPGQASN 99
          S HE  HSRS+S+G FGSS             Y GQ SN
Sbjct: 61 SGHELMHSRSVSKGAFGSS-------------YAGQVSN 86

[Close]

BLAST of Tan0008828 vs. ExPASy TrEMBL
Match: A0A0A0KT06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQPPTFEFSD 60
           MEGLIPYLFHA+KKQKPRHSYRSQSVGSSRSYHLLI  NDESSHRRTRSD+QPPTFEF D
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  QRSVHEFTHSRSISQ-GFGSSARPSNGFDSNFSVYPGQASNKPAY-YGNPRR 109
           QRS  E THSRS+++  FGSS RPSNGF+SNF  Y GQ SN+PAY YGNP R
Sbjct: 61  QRSTRELTHSRSVNKVAFGSSTRPSNGFESNFYSYTGQVSNRPAYNYGNPSR 112

[Close]

BLAST of Tan0008828 vs. ExPASy TrEMBL
Match: A0A5A7TM95 (Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00650 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 89/113 (78.76%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLI--NDESSHRRTRSDFQPPTFEFSD 60
           MEGLIPYLFHA+KKQKPRHSYRSQSVGSSRSYHLLI  NDESSHRRTRSD+QPPTFEF D
Sbjct: 1   MEGLIPYLFHAMKKQKPRHSYRSQSVGSSRSYHLLITANDESSHRRTRSDYQPPTFEFLD 60

Query: 61  -QRSVHEFTHSRSISQ-GFGSSARPSNGFDSNFSVYPGQASNKPAY-YGNPRR 109
            QR   E THSRS+++  FGSS RPSNGF+SNF  Y GQ SN+PAY YGNP R
Sbjct: 61  QQRPSQELTHSRSVNKVAFGSSTRPSNGFESNFYSYAGQVSNRPAYSYGNPPR 113

[Close]

BLAST of Tan0008828 vs. ExPASy TrEMBL
Match: A0A5E4FRG8 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B005838 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MEGLIPYLFHALKKQKPRHSYR--SQSVGSSRSYHLLINDE-----SSHRRTRSDFQPP- 60
           MEGLIP+LFHALKKQ+P+H YR  SQS  S+RSYHLL++ +     SSHRRTRS+FQPP 
Sbjct: 1   MEGLIPFLFHALKKQRPQHRYRSFSQSNSSNRSYHLLMSSQDSLEGSSHRRTRSEFQPPV 60

Query: 61  -TFEFSDQRSVHEFTHSRSISQGFGSSARPSNGF-DSNFSVYPGQASN 99
            T  F +QR  +EF HSRS+ +  G SA PS     S    YP Q SN
Sbjct: 61  STAAFFEQRPANEFAHSRSLKEEGGVSAAPSVLIGSSKMGSYPYQVSN 108

[Close]

BLAST of Tan0008828 vs. ExPASy TrEMBL
Match: A0A7J7HFZ0 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009777 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLI----NDESSHRRTRSDFQPPTFEF 60
          MEGLIP L +ALKKQ+P H+YR  S GS+RSYHLL+     + SSHRRTRS+FQPPT +F
Sbjct: 1  MEGLIPMLINALKKQRPHHAYRGLSEGSNRSYHLLMAPDSREGSSHRRTRSEFQPPTVDF 60

Query: 61 SDQRSVHEFTHSRSISQG 75
           DQRS  EF+HSRS ++G
Sbjct: 61 LDQRSTLEFSHSRSFNRG 78

[Close]

BLAST of Tan0008828 vs. ExPASy TrEMBL
Match: A0A6N2KDI5 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS66676 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 1  MEGLIPYLFHALKKQKPRHSYRSQSVGSSRSYHLLINDE-------SSHRRTRSDFQPPT 60
          MEGLIPYL H++KKQKPR+SYRS SVGSSRSYHLLI  +       SSHRRTRS++QPP 
Sbjct: 1  MEGLIPYLLHSIKKQKPRNSYRSLSVGSSRSYHLLIGGDQGESLNGSSHRRTRSEYQPPP 60

Query: 61 FEFSDQRSVHEFTHSRSISQGFGSSARPSNGFDSNFSVYP 94
           EFS+QR+  +F  S S+ +   S+  PS    S F  YP
Sbjct: 61 LEFSEQRANLDFLRSGSLRK--RSTNSPSMTGGSKFDSYP 98

[Close]

BLAST of Tan0008828 vs. TAIR 10
Match: AT3G19615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-10
Identity = 46/87 (52.87%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 1  MEGLIPYLFHALKK-QKPRHS-YRSQSVGSSRSYHLLINDE--------SSHRRTRSDFQ 60
          MEGLIPYL HA+KK  KP H  YRS SVGSSRSY  L+  +        SSHRRTRSD+ 
Sbjct: 1  MEGLIPYLIHAIKKDHKPDHQRYRSISVGSSRSYRPLMMGQDGSSSMQGSSHRRTRSDYN 60

Query: 61 PPT-FEFSDQRSV---HEFTHSRSISQ 74
          P    +  DQRS     EF +  S SQ
Sbjct: 61 PHVIMDKFDQRSSGFGQEFVNKDSSSQ 87

The following BLAST results are available for this feature:

BLAST of Tan0008828 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905929.1	1.0e-40	82.41	uncharacterized protein LOC120091851 [Benincasa hispida]	[more]
KGN52765.1	1.9e-39	80.36	hypothetical protein Csa_015267 [Cucumis sativus]	[more]
KAA0044340.1	4.0e-37	78.76	putative beta-D-xylosidase 5 isoform X2 [Cucumis melo var. makuwa] >TYK29469.1 p...	[more]
KAG6576920.1	5.8e-28	72.73	hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014945.1	5.8e-28	72.73	NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Tan0008828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT06	9.2e-40	80.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1	[more]
A0A5A7TM95	1.9e-37	78.76	Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5E4FRG8	1.7e-17	56.48	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B005838 PE=4 SV=1	[more]
A0A7J7HFZ0	1.7e-17	64.10	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_009777 PE=4 SV=1	[more]
A0A6N2KDI5	1.7e-17	57.00	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS66676 PE=4 SV=1	[more]

BLAST of Tan0008828 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19615.1	3.4e-10	52.87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..108
None	No IPR available	PANTHER	PTHR38370	BETA-1,4-XYLOSIDASE	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008828.1	Tan0008828.1	mRNA