Tan0008715 (gene) Snake gourd v1

Overview


Name	Tan0008715
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein of unknown function (DUF1068)
Location	LG09: 24609424 .. 24609591 (-)
RNA-Seq Expression	Tan0008715
Synteny	Tan0008715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATAGAAAATCATCATCTCACTACCAAAACGAAGCCGATAATTGCAACATTGGGATTATGACTTGTGAGCAAGCAAGGGAGAGAGCTCAAGAAGAGCTTGTCAAGGAACACAAACTCACTGAGATGATTGCAACACCCTATTTATTATGTTCTACACAATAA

mRNA sequence

ATGGTTGATAGAAAATCATCATCTCACTACCAAAACGAAGCCGATAATTGCAACATTGGGATTATGACTTGTGAGCAAGCAAGGGAGAGAGCTCAAGAAGAGCTTGTCAAGGAACACAAACTCACTGAGATGATTGCAACACCCTATTTATTATGTTCTACACAATAA

Coding sequence (CDS)

ATGGTTGATAGAAAATCATCATCTCACTACCAAAACGAAGCCGATAATTGCAACATTGGGATTATGACTTGTGAGCAAGCAAGGGAGAGAGCTCAAGAAGAGCTTGTCAAGGAACACAAACTCACTGAGATGATTGCAACACCCTATTTATTATGTTCTACACAATAA

Protein sequence

MVDRKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEMIATPYLLCSTQ

Homology

[Close]

BLAST of Tan0008715 vs. NCBI nr
Match: XP_014626800.1 (uncharacterized protein LOC100306127 isoform X1 [Glycine max] >XP_028217044.1 uncharacterized protein LOC114399127 isoform X2 [Glycine soja] >KRG96872.1 hypothetical protein GLYMA_19G238000v4 [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 126 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTAL 166

[Close]

BLAST of Tan0008715 vs. NCBI nr
Match: NP_001237979.1 (uncharacterized protein LOC100306127 [Glycine max] >XP_028217043.1 uncharacterized protein LOC114399127 isoform X1 [Glycine soja] >ACU14159.1 unknown [Glycine max] >KAG4396636.1 hypothetical protein GLYMA_19G238000v4 [Glycine max] >KAG4913955.1 hypothetical protein JHK86_054388 [Glycine max] >KAG4916889.1 hypothetical protein JHK87_054446 [Glycine soja] >KAG4928857.1 hypothetical protein JHK85_055343 [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 128 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTAL 168

[Close]

BLAST of Tan0008715 vs. NCBI nr
Match: XP_006577260.1 (uncharacterized protein LOC100779008 [Glycine max] >XP_028226613.1 uncharacterized protein LOC114407633 [Glycine soja] >KAG5044328.1 hypothetical protein JHK87_008243 [Glycine soja] >KHN04020.1 hypothetical protein glysoja_022706 [Glycine soja] >KRH68600.1 hypothetical protein GLYMA_03G240700v4 [Glycine max] >RZC22251.1 hypothetical protein D0Y65_008087 [Glycine soja])

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 125 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTTL 165

[Close]

BLAST of Tan0008715 vs. NCBI nr
Match: KAG5056125.1 (hypothetical protein JHK85_008635 [Glycine max] >KAG5073186.1 hypothetical protein JHK86_008397 [Glycine max])

HSP 1 Score: 63.2 bits (152), Expect = 8.3e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 161 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTTL 201

[Close]

BLAST of Tan0008715 vs. NCBI nr
Match: TYK10217.1 (DUF1068 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLT-------EMIATP 49
           +KSSS Y+ E +NCNIG+ TCE+ARERAQEELV+E KLT       EM+A P
Sbjct: 54  KKSSSQYKKEVENCNIGVRTCEEARERAQEELVEECKLTALWQKRAEMLAKP 105

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BLAST of Tan0008715 vs. ExPASy TrEMBL
Match: I1JRF9 (Uncharacterized protein OS=Glycine max OX=3847 GN=100779008 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 125 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTTL 165

[Close]

BLAST of Tan0008715 vs. ExPASy TrEMBL
Match: K7MZZ5 (Uncharacterized protein OS=Glycine max OX=3847 GN=100306127 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 126 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTAL 166

[Close]

BLAST of Tan0008715 vs. ExPASy TrEMBL
Match: A0A445FL04 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_052407 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 128 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTAL 168

[Close]

BLAST of Tan0008715 vs. ExPASy TrEMBL
Match: A0A445LGG1 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008087 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 125 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTTL 165

[Close]

BLAST of Tan0008715 vs. ExPASy TrEMBL
Match: C6SY36 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.0e-07
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           RK+ SHYQ EA+ CNIG+ TCE+ARERA+ EL++EHKLT +
Sbjct: 128 RKTFSHYQKEAEKCNIGVETCEEARERAEAELIEEHKLTAL 168

[Close]

BLAST of Tan0008715 vs. TAIR 10
Match: AT2G32580.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 51.6 bits (122), Expect = 2.3e-07
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           +K +S YQ EAD CN G+ TCE+ARE+A++ LV++ KLT M
Sbjct: 115 KKITSSYQKEADKCNSGMETCEEAREKAEKALVEQKKLTSM 155

[Close]

BLAST of Tan0008715 vs. TAIR 10
Match: AT2G32580.2 (Protein of unknown function (DUF1068) )

HSP 1 Score: 51.6 bits (122), Expect = 2.3e-07
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 4  RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
          +K +S YQ EAD CN G+ TCE+ARE+A++ LV++ KLT M
Sbjct: 53 KKITSSYQKEADKCNSGMETCEEAREKAEKALVEQKKLTSM 93

[Close]

BLAST of Tan0008715 vs. TAIR 10
Match: AT1G05070.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 46.6 bits (109), Expect = 7.5e-06
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLT 43
           +K +S YQ EAD CN G+ TCE+ARE+A+  L ++ KLT
Sbjct: 116 KKVTSSYQKEADKCNSGMETCEEAREKAELALAEQKKLT 154

[Close]

BLAST of Tan0008715 vs. TAIR 10
Match: AT4G04360.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 44.3 bits (103), Expect = 3.7e-05
Identity = 19/41 (46.34%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           +K++S YQ EAD C++G+ TCE ARE+A+  L ++ +L+ M
Sbjct: 116 KKAASQYQKEADKCSMGMETCELAREKAEAALDEQRRLSYM 156

[Close]

BLAST of Tan0008715 vs. TAIR 10
Match: AT4G30996.1 (Protein of unknown function (DUF1068) )

HSP 1 Score: 43.9 bits (102), Expect = 4.9e-05
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 4   RKSSSHYQNEADNCNIGIMTCEQARERAQEELVKEHKLTEM 45
           ++ +S YQ EA+ CN     CE ARERA+  L+KE K+T +
Sbjct: 119 KRVASQYQKEAEKCNAATEICESARERAEALLIKERKITSL 159

The following BLAST results are available for this feature:

BLAST of Tan0008715 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008715 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_014626800.1	8.3e-07	65.85	uncharacterized protein LOC100306127 isoform X1 [Glycine max] >XP_028217044.1 un...	[more]
NP_001237979.1	8.3e-07	65.85	uncharacterized protein LOC100306127 [Glycine max] >XP_028217043.1 uncharacteriz...	[more]
XP_006577260.1	8.3e-07	65.85	uncharacterized protein LOC100779008 [Glycine max] >XP_028226613.1 uncharacteriz...	[more]
KAG5056125.1	8.3e-07	65.85	hypothetical protein JHK85_008635 [Glycine max] >KAG5073186.1 hypothetical prote...	[more]
TYK10217.1	1.1e-06	61.54	DUF1068 domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0008715 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
I1JRF9	4.0e-07	65.85	Uncharacterized protein OS=Glycine max OX=3847 GN=100779008 PE=4 SV=1	[more]
K7MZZ5	4.0e-07	65.85	Uncharacterized protein OS=Glycine max OX=3847 GN=100306127 PE=4 SV=1	[more]
A0A445FL04	4.0e-07	65.85	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_052407 PE=4 SV=1	[more]
A0A445LGG1	4.0e-07	65.85	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008087 PE=4 SV=1	[more]
C6SY36	4.0e-07	65.85	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Tan0008715 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32580.1	2.3e-07	56.10	Protein of unknown function (DUF1068)	[more]
AT2G32580.2	2.3e-07	56.10	Protein of unknown function (DUF1068)	[more]
AT1G05070.1	7.5e-06	53.85	Protein of unknown function (DUF1068)	[more]
AT4G04360.1	3.7e-05	46.34	Protein of unknown function (DUF1068)	[more]
AT4G30996.1	4.9e-05	46.34	Protein of unknown function (DUF1068)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010471	Protein of unknown function DUF1068	PFAM	PF06364	DUF1068	coord: 4..44 e-value: 3.9E-14 score: 52.9
None	No IPR available	PANTHER	PTHR32254:SF6	PROTEIN, PUTATIVE-RELATED	coord: 3..44
None	No IPR available	PANTHER	PTHR32254	EXPRESSED PROTEIN	coord: 3..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008715.1	Tan0008715.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane