Tan0008579 (gene) Snake gourd v1

Overview


Name	Tan0008579
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Anaphase-promoting complex
Location	LG08: 2723236 .. 2723430 (+)
RNA-Seq Expression	Tan0008579
Synteny	Tan0008579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCTGCCGCCACCACCACCGACACAACCTCCGCCGCTGCCTCCCTCCTACACAATCTCAATCGCAACAAAGATCCGACCTCCAAAGCCCAACGCCTCGGTATCTCCTCTTGA

mRNA sequence

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCTGCCGCCACCACCACCGACACAACCTCCGCCGCTGCCTCCCTCCTACACAATCTCAATCGCAACAAAGATCCGACCTCCAAAGCCCAACGCCTCGGTATCTCCTCTTGA

Coding sequence (CDS)

ATGCTGAGAAGACAACCCAGCAAGATCGAGGTCAAAATCGAAGACAAGGAAGAACTCGAACAAGCTCGCAAACGCGCCGCCGCCGCTGCCGCCACCACCACCGACACAACCTCCGCCGCTGCCTCCCTCCTACACAATCTCAATCGCAACAAAGATCCGACCTCCAAAGCCCAACGCCTCGGTATCTCCTCTTGA

Protein sequence

MLRRQPSKIEVKIEDKEELEQARKRAAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQRLGISS

Homology

[Close]

BLAST of Tan0008579 vs. NCBI nr
Match: KAG6586369.1 (Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAA-----TTTDTT-SAAASLLHNLNRNKDPT 60
          MLRRQPSKIEVKIEDKEELEQARKRAAAAAA     TTTDTT SAAASLLHNLNRNKDPT
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAAAAAASTTTDTTSSAAASLLHNLNRNKDPT 60

[Close]

BLAST of Tan0008579 vs. NCBI nr
Match: OVA19190.1 (Anaphase-promoting complex [Macleaya cordata])

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKR--AAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQ 60
          MLRR+PSKIEVKIEDKEELE+ARKR  A++AA TTT TT+ AA+L+H L+RNKDP++K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

Query: 61 RLGISS 65
          R+G+SS
Sbjct: 61 RIGLSS 66

[Close]

BLAST of Tan0008579 vs. NCBI nr
Match: KAG5564275.1 (hypothetical protein RHGRI_000468 [Rhododendron griersonianum])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 47/67 (70.15%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAAT--TTDTTSAAASLLHNLNR-NKDPTSKA 60
          MLRR+PSKIEVK+EDKEELE+ARKR+AAAAAT  TT +T+ AASLLH+ +R +KDP+SK+
Sbjct: 1  MLRRKPSKIEVKVEDKEELEEARKRSAAAAATTSTTSSTTGAASLLHHFDRSSKDPSSKS 60

Query: 61 QRLGISS 65
           R+G+SS
Sbjct: 61 HRIGLSS 67

[Close]

BLAST of Tan0008579 vs. NCBI nr
Match: DAD45067.1 (TPA_asm: hypothetical protein HUJ06_003297 [Nelumbo nucifera])

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQRL 60
          MLRR+PSKIEVK+EDKEELE+ARKRA A  A  T     AAS+LH+LNRNKDP++K+QR+
Sbjct: 1  MLRRKPSKIEVKVEDKEELEEARKRATAGPAPPT----GAASILHHLNRNKDPSTKSQRI 60

Query: 61 GISS 65
          G+SS
Sbjct: 61 GLSS 60

[Close]

BLAST of Tan0008579 vs. NCBI nr
Match: KAF5185259.1 (hypothetical protein FRX31_025150 [Thalictrum thalictroides])

HSP 1 Score: 75.1 bits (183), Expect = 2.5e-10
Identity = 41/62 (66.13%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQRL 60
          MLRR+PSKIEV++EDKEELE+ARKR+AAA   T   T+ AAS+LH+L++NKDP++K+QR+
Sbjct: 1  MLRRKPSKIEVQLEDKEELEEARKRSAAA---TNTATTGAASVLHHLDKNKDPSNKSQRI 59

Query: 61 GI 63
          GI
Sbjct: 61 GI 59

[Close]

BLAST of Tan0008579 vs. ExPASy TrEMBL
Match: A0A0A0LFB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-17
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAA----TTTDTTSAAASLLHNLNRNKDPTSK 60
          MLRRQPSKIEVKIEDKEELEQARKRAAAAA+    TTTD TSAA SLLHN+NRNKD  SK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

Query: 61 AQRLGISS 65
          AQRLGISS
Sbjct: 61 AQRLGISS 68

[Close]

BLAST of Tan0008579 vs. ExPASy TrEMBL
Match: A0A200R928 (Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 47/66 (71.21%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKR--AAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQ 60
          MLRR+PSKIEVKIEDKEELE+ARKR  A++AA TTT TT+ AA+L+H L+RNKDP++K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

Query: 61 RLGISS 65
          R+G+SS
Sbjct: 61 RIGLSS 66

[Close]

BLAST of Tan0008579 vs. ExPASy TrEMBL
Match: A0A7J6VJG6 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_025150 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 41/62 (66.13%), Postives = 55/62 (88.71%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQRL 60
          MLRR+PSKIEV++EDKEELE+ARKR+AAA   T   T+ AAS+LH+L++NKDP++K+QR+
Sbjct: 1  MLRRKPSKIEVQLEDKEELEEARKRSAAA---TNTATTGAASVLHHLDKNKDPSNKSQRI 59

Query: 61 GI 63
          GI
Sbjct: 61 GI 59

[Close]

BLAST of Tan0008579 vs. ExPASy TrEMBL
Match: A0A371EQJ7 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52824 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAA--ATTTDTTSAAASLLHNLNRNKDPTSKAQ 60
          MLRR+PSKIEVKIEDKEELE+AR+R A+AA   TTT TT+  ++LL  L+R +DP+SKA 
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARRRNASAATTTTTTTTTTGTSALLRQLDRGEDPSSKAH 60

Query: 61 RLGISS 65
          R+G+SS
Sbjct: 61 RIGLSS 66

[Close]

BLAST of Tan0008579 vs. ExPASy TrEMBL
Match: A0A0A0LI59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.0e-10
Identity = 45/64 (70.31%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAATTTDTTSAAASLLHNLNRNKDPTSKAQRL 60
          MLRRQP+ I+V+IEDKEELEQ RKR AAA        S  +SLLHNL+RNKDP SKAQRL
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA--------STYSSLLHNLSRNKDPASKAQRL 56

Query: 61 GISS 65
          GISS
Sbjct: 61 GISS 56

The following BLAST results are available for this feature:

BLAST of Tan0008579 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008579 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586369.1	1.3e-16	90.91	Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
OVA19190.1	5.3e-13	71.21	Anaphase-promoting complex [Macleaya cordata]	[more]
KAG5564275.1	1.0e-11	70.15	hypothetical protein RHGRI_000468 [Rhododendron griersonianum]	[more]
DAD45067.1	1.7e-11	68.75	TPA_asm: hypothetical protein HUJ06_003297 [Nelumbo nucifera]	[more]
KAF5185259.1	2.5e-10	66.13	hypothetical protein FRX31_025150 [Thalictrum thalictroides]	[more]

BLAST of Tan0008579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFB1	2.2e-17	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1	[more]
A0A200R928	2.6e-13	71.21	Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=...	[more]
A0A7J6VJG6	1.2e-10	66.13	Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_025150 PE=...	[more]
A0A371EQJ7	2.0e-10	65.15	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52824 P...	[more]
A0A0A0LI59	2.0e-10	70.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1	[more]

BLAST of Tan0008579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64
IPR018860	Anaphase-promoting complex, subunit CDC26	PFAM	PF10471	ANAPC_CDC26	coord: 1..54 e-value: 6.1E-6 score: 27.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008579.1	Tan0008579.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
cellular_component	GO:0005680	anaphase-promoting complex