Tan0008564 (gene) Snake gourd v1

Overview
NameTan0008564
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 87801355 .. 87802463 (+)
RNA-Seq ExpressionTan0008564
SyntenyTan0008564
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATGACTAATTTCGACAATAAATTACTCCTTAAAGAAAAAAGTTGAAGATAAGCAAATTGGGTCCCAATATTTTATAATCTGCAAAGTTTTAATGCTTGTTTACTTGAAATCCATTTAAGAACCGCTTTGGTTTTCATAAGCATATATTTTTTTAAAAGCTCGAAGACCAGACTCTTTCAAAACCTCCAATGGCAACGACAATGGCAGTCACAAACTGCAAATCTACTCCTCTTGCCCTAAAATCTGTTCCATCTCTTCAAATCAAACCTCTGAGCAAAATTTTTATGCTCAAACCTGCAAAAATTTCAGTCAACAGAACTCCCAAACTCCGAATTACATCTTCTATCAAGAACAACCTGGTTAGTATCTGTGTGTGTGTGTAGATTTCTTAGATCGGATCATTATTCTTACAGTCTGTTTGATTTTGGTAGGTTTTCGAGGATCGTTTCAATGGTGTTATTTGCTACAGAGACGACGATGGAGAGATCATTTGCGAAGGATATGACGACGAAGAGCCTCGTATTGAGCAAGAGATTGAGAAATTACCTTGTGAAAAATCTTACCGAAGGTAGAAACGAGATCTGGATTCATTGTTGACTGAATCGAGAGGTATTGTAATAGCAATTTTTCTTGGTTCTGATTCTTATTCTTTCTATCTGCGAAGTTCCAGATCCGATGGCGAATTGAAGATCGATCGTCTTCTCCTGCAGCGAAGTTGGGAGAAAAGCTTAGAAGCCGTTAATGGCGGTTCTGGAAGTGGAAGAGGAGATCTTCGAATTCGGGCGAATGGCTTGAGTTTGTAGTTATGGCTTGAGCAGTTGAGCTCTGTAAAAATGGAAGTTGCAGATCCTAAGCGAAGGGAAATTGAAATTTCCTTATTAGGATTTTGAATAATTTTACCCTTCTTTATACTTTATAGTTGATTTAGATTGTAAATATAGCATATAATAAAAATTGTAAAAATGATAAAATCTCGTTTGCTGATGATTATTCAATCATCACTAATGTAAATTACTTTTGAGTAAAAACACAAAGTTGTTTTGAGATTTTTTTTCCCATCTTTTTTTTAGTTCCAACTAAGTGAGTTATATTCGAAATGATACAAAA

mRNA sequence

CAATGACTAATTTCGACAATAAATTACTCCTTAAAGAAAAAAGTTGAAGATAAGCAAATTGGGTCCCAATATTTTATAATCTGCAAAGTTTTAATGCTTGTTTACTTGAAATCCATTTAAGAACCGCTTTGGTTTTCATAAGCATATATTTTTTTAAAAGCTCGAAGACCAGACTCTTTCAAAACCTCCAATGGCAACGACAATGGCAGTCACAAACTGCAAATCTACTCCTCTTGCCCTAAAATCTGTTCCATCTCTTCAAATCAAACCTCTGAGCAAAATTTTTATGCTCAAACCTGCAAAAATTTCAGTCAACAGAACTCCCAAACTCCGAATTACATCTTCTATCAAGAACAACCTGGTTTTCGAGGATCGTTTCAATGGTGTTATTTGCTACAGAGACGACGATGGAGAGATCATTTGCGAAGGATATGACGACGAAGAGCCTCGTATTGAGCAAGAGATTGAGAAATTACCTTGTGAAAAATCTTACCGAAGGTAGAAACGAGATCTGGATTCATTGTTGACTGAATCGAGAGGTATTGTAATAGCAATTTTTCTTGGTTCTGATTCTTATTCTTTCTATCTGCGAAGTTCCAGATCCGATGGCGAATTGAAGATCGATCGTCTTCTCCTGCAGCGAAGTTGGGAGAAAAGCTTAGAAGCCGTTAATGGCGGTTCTGGAAGTGGAAGAGGAGATCTTCGAATTCGGGCGAATGGCTTGAGTTTGTAGTTATGGCTTGAGCAGTTGAGCTCTGTAAAAATGGAAGTTGCAGATCCTAAGCGAAGGGAAATTGAAATTTCCTTATTAGGATTTTGAATAATTTTACCCTTCTTTATACTTTATAGTTGATTTAGATTGTAAATATAGCATATAATAAAAATTGTAAAAATGATAAAATCTCGTTTGCTGATGATTATTCAATCATCACTAATGTAAATTACTTTTGAGTAAAAACACAAAGTTGTTTTGAGATTTTTTTTCCCATCTTTTTTTTAGTTCCAACTAAGTGAGTTATATTCGAAATGATACAAAA

Coding sequence (CDS)

ATGGCAACGACAATGGCAGTCACAAACTGCAAATCTACTCCTCTTGCCCTAAAATCTGTTCCATCTCTTCAAATCAAACCTCTGAGCAAAATTTTTATGCTCAAACCTGCAAAAATTTCAGTCAACAGAACTCCCAAACTCCGAATTACATCTTCTATCAAGAACAACCTGGTTTTCGAGGATCGTTTCAATGGTGTTATTTGCTACAGAGACGACGATGGAGAGATCATTTGCGAAGGATATGACGACGAAGAGCCTCGTATTGAGCAAGAGATTGAGAAATTACCTTGTGAAAAATCTTACCGAAGGTAG

Protein sequence

MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFEDRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR
Homology
BLAST of Tan0008564 vs. NCBI nr
Match: XP_023526222.1 (uncharacterized protein LOC111789773 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.6e-35
Identity = 81/103 (78.64%), Postives = 88/103 (85.44%), Query Frame = 0

Query: 1   MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFE 60
           MA  M  TNC+S P AL SV SLQ KPLS++FMLKPAK S+NRT  L+IT S+KNN+VFE
Sbjct: 1   MAMAMIGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTFTLQITCSLKNNVVFE 60

Query: 61  DRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           DR NGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKS RR
Sbjct: 61  DRSNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSRRR 103

BLAST of Tan0008564 vs. NCBI nr
Match: XP_022956325.1 (uncharacterized protein LOC111458058 [Cucurbita moschata] >KAG6581790.1 hypothetical protein SDJN03_21792, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 157.9 bits (398), Expect = 4.6e-35
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 0

Query: 1   MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFE 60
           MA  M  TNC+S P AL SV SLQ KPLS++FMLKPAK S+NRT  L+IT S+KNN+VFE
Sbjct: 1   MAMAMTGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFE 60

Query: 61  DRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           DR NGVICYRDDDGEIICEGYDDEEPRIE+EIEKLPCEKS RR
Sbjct: 61  DRSNGVICYRDDDGEIICEGYDDEEPRIEEEIEKLPCEKSRRR 103

BLAST of Tan0008564 vs. NCBI nr
Match: KAG7018241.1 (hypothetical protein SDJN02_20109 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.9 bits (398), Expect = 4.6e-35
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 0

Query: 1   MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFE 60
           MA  M  TNC+S P AL SV SLQ KPLS++FMLKPAK S+NRT  L+IT S+KNN+VFE
Sbjct: 1   MAMAMTGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFE 60

Query: 61  DRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           DR NGVICYRDDDGEIICEGYDDEEPRIE+EIEKLPCEKS RR
Sbjct: 61  DRSNGVICYRDDDGEIICEGYDDEEPRIEEEIEKLPCEKSRRR 103

BLAST of Tan0008564 vs. NCBI nr
Match: XP_022980749.1 (uncharacterized protein LOC111480023 [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 0

Query: 1   MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFE 60
           M   M  TNC+S P AL S  SLQ KPLS++FMLKPAK S+NRT  L+IT S+KNN+VFE
Sbjct: 1   MTMAMTGTNCRSPPFALNSATSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFE 60

Query: 61  DRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           DR NGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKS RR
Sbjct: 61  DRSNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSRRR 103

BLAST of Tan0008564 vs. NCBI nr
Match: XP_038900432.1 (uncharacterized protein LOC120087657 [Benincasa hispida])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 80/100 (80.00%), Postives = 87/100 (87.00%), Query Frame = 0

Query: 5   MAVTNCKSTPLALKSVPSLQIKPLSKIFML-KPAKISVNRTPKLRITSSIKNNLVFEDRF 64
           MA TNC+S  L  KS+ SLQ KPLSK FML KPAK+SVNRT  L+ITSS+KNNLVFEDR 
Sbjct: 1   MAATNCRSPLLPRKSITSLQTKPLSKTFMLFKPAKVSVNRTLTLQITSSVKNNLVFEDRS 60

Query: 65  NGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           NGVICYRD+DGEIICEGYDDE+PRIEQEIEKLPCEKS RR
Sbjct: 61  NGVICYRDEDGEIICEGYDDEKPRIEQEIEKLPCEKSRRR 100

BLAST of Tan0008564 vs. ExPASy TrEMBL
Match: A0A6J1GXI0 (uncharacterized protein LOC111458058 OS=Cucurbita moschata OX=3662 GN=LOC111458058 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 80/103 (77.67%), Postives = 88/103 (85.44%), Query Frame = 0

Query: 1   MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFE 60
           MA  M  TNC+S P AL SV SLQ KPLS++FMLKPAK S+NRT  L+IT S+KNN+VFE
Sbjct: 1   MAMAMTGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFE 60

Query: 61  DRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           DR NGVICYRDDDGEIICEGYDDEEPRIE+EIEKLPCEKS RR
Sbjct: 61  DRSNGVICYRDDDGEIICEGYDDEEPRIEEEIEKLPCEKSRRR 103

BLAST of Tan0008564 vs. ExPASy TrEMBL
Match: A0A6J1J044 (uncharacterized protein LOC111480023 OS=Cucurbita maxima OX=3661 GN=LOC111480023 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.5e-35
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 0

Query: 1   MATTMAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFE 60
           M   M  TNC+S P AL S  SLQ KPLS++FMLKPAK S+NRT  L+IT S+KNN+VFE
Sbjct: 1   MTMAMTGTNCRSPPFALNSATSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFE 60

Query: 61  DRFNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSYRR 104
           DR NGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKS RR
Sbjct: 61  DRSNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSRRR 103

BLAST of Tan0008564 vs. ExPASy TrEMBL
Match: A0A5D3D6I4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00800 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.8e-30
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0

Query: 5   MAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFEDRFN 64
           MA TN +S  L LKS  SLQ KPL+ +FMLKP KISVNRT  L+ITS +KNNLVFEDR N
Sbjct: 1   MAATNHRSPLLPLKSFTSLQTKPLTNLFMLKPPKISVNRTLTLQITSCLKNNLVFEDRSN 60

Query: 65  GVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKS 101
           GVICYRDDDGEIICEGYDDEE  IE+E+EKLPCEKS
Sbjct: 61  GVICYRDDDGEIICEGYDDEEIHIEEEMEKLPCEKS 96

BLAST of Tan0008564 vs. ExPASy TrEMBL
Match: A0A1S3CC94 (uncharacterized protein LOC103499196 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499196 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.8e-30
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0

Query: 5   MAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFEDRFN 64
           MA TN +S  L LKS  SLQ KPL+ +FMLKP KISVNRT  L+ITS +KNNLVFEDR N
Sbjct: 1   MAATNHRSPLLPLKSFTSLQTKPLTNLFMLKPPKISVNRTLTLQITSCLKNNLVFEDRSN 60

Query: 65  GVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKS 101
           GVICYRDDDGEIICEGYDDEE  IE+E+EKLPCEKS
Sbjct: 61  GVICYRDDDGEIICEGYDDEEIHIEEEMEKLPCEKS 96

BLAST of Tan0008564 vs. ExPASy TrEMBL
Match: A0A1S3CCR0 (uncharacterized protein LOC103499196 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499196 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.8e-30
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 0

Query: 5   MAVTNCKSTPLALKSVPSLQIKPLSKIFMLKPAKISVNRTPKLRITSSIKNNLVFEDRFN 64
           MA TN +S  L LKS  SLQ KPL+ +FMLKP KISVNRT  L+ITS +KNNLVFEDR N
Sbjct: 1   MAATNHRSPLLPLKSFTSLQTKPLTNLFMLKPPKISVNRTLTLQITSCLKNNLVFEDRSN 60

Query: 65  GVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKS 101
           GVICYRDDDGEIICEGYDDEE  IE+E+EKLPCEKS
Sbjct: 61  GVICYRDDDGEIICEGYDDEEIHIEEEMEKLPCEKS 96

BLAST of Tan0008564 vs. TAIR 10
Match: AT3G14280.1 (unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 7.4e-07
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 34  LKPAKISVNRTPKLRITSSIKNNLVFEDRFNGVICYRDDDGEIICEGYDDEEPRIEQEIE 93
           +K  K +V++   +R ++    N+VFED   G+ICY DD+GE+ICEGY DE PR   +  
Sbjct: 35  VKVKKATVSQPQPIRYST---KNIVFEDPIQGIICYTDDNGEVICEGY-DEGPRCPTQ-- 94

Query: 94  KLPCEKSYRR 104
             P   SY R
Sbjct: 95  -SPMVASYSR 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023526222.13.6e-3578.64uncharacterized protein LOC111789773 [Cucurbita pepo subsp. pepo][more]
XP_022956325.14.6e-3577.67uncharacterized protein LOC111458058 [Cucurbita moschata] >KAG6581790.1 hypothet... [more]
KAG7018241.14.6e-3577.67hypothetical protein SDJN02_20109 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022980749.11.8e-3476.70uncharacterized protein LOC111480023 [Cucurbita maxima][more]
XP_038900432.11.5e-3380.00uncharacterized protein LOC120087657 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1GXI02.2e-3577.67uncharacterized protein LOC111458058 OS=Cucurbita moschata OX=3662 GN=LOC1114580... [more]
A0A6J1J0448.5e-3576.70uncharacterized protein LOC111480023 OS=Cucurbita maxima OX=3661 GN=LOC111480023... [more]
A0A5D3D6I44.8e-3076.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CC944.8e-3076.04uncharacterized protein LOC103499196 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CCR04.8e-3076.04uncharacterized protein LOC103499196 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT3G14280.17.4e-0742.86unknown protein; Has 51 Blast hits to 51 proteins in 13 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34206OS06G0193300 PROTEINcoord: 5..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008564.1Tan0008564.1mRNA
Tan0008564.2Tan0008564.2mRNA
Tan0008564.3Tan0008564.3mRNA