Tan0008454 (gene) Snake gourd v1

Overview


Name	Tan0008454
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	serine/arginine-rich splicing factor SC35-like
Location	LG02: 31363585 .. 31368037 (+)
RNA-Seq Expression	Tan0008454
Synteny	Tan0008454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCGAAGGATCTTTCTTCTCCGTCCTCTCGAACCCTAACCCTAATCTTCATCCTCCACTCCTACCAACATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGACACCTTCTCGCTTCTCGTGCTCAACATAACCTTCCGTACTATTCTATCCCCCTGTCTCTCTTTCAATCCTTCTTTCGTTTTCCGGTTTTGTAGAGTTACGACTGAGGTTTTATGTGTTTTTAGGTACCACTGCTGATGACCTTTACCCACTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGTATAATTCCCTGCCTTGTTGTGTTTGTTTACCCATTTTTTTGATTTTTTTTCATCTGGAATTTGTTTGATTTCTGAAAGGAATGATGGGTGTTTTTTTATAGCTCGTACGAGTTTCGTGTTACTCAGATTAAACATCTAGAGGTTTAGAATTGAATTGATTTCCTTTCATTGATATTCACCTAGTTCTTATGAAACCAGTCTGCACATGACGGTGAAATGATATTTCTTCATTCAGCTTAAATGCTGCTTGTGGATTTCTATTTTTATTTTTGTTTTCTGTTTGTTCCTTTTTTTTGTTGTTGTTGGAGTCGATTATTCTCGTTTTGACTACTATTTCATAATTGTCTCTTATATTGTTTTGTGGATCAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGACAGGCTAGATGGTACCCCAGCTACTTTGTCTCTGTTGTTTGATTTTTTCCTTGCCCAATTTGTAGATACACACAAGCTACAAGGAAGATGTTTGATATTTTTTTTGAGGATAGTAGTCTGATAATCTTCTGGGCGTTATTCACATCATTTTGGGCCTATAATATCAAAAAGTTTGAAATTGACTCCCTCACTTGTTTGGTAGTTGTGTTTGACTTAAAGTTTTGCCTCTACTCTCCTCCATTTGATAAGTTCAATGCGTTTGATTTGGGGAGCTAATCCACTGAATATGATTTTAAAACTGAAATATATATATATATATATATATATATATATATTATGTTATGTTGCAGGCACTGTGGTTGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATGTGAGTAATGAATGGTGGTTTTGCTCTCTTTCATTGGTCAATAAATGCTCATCCATGGGCACAACTATCACTCTACATATATTTGTTTTGCTAATGGGTGTTGTTTTTATGTCAACATATGCTTTTAGTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCGAGATACAGGTCTAGAAGTCGTAGTCCACGGAGACGGTAATTTCGCCTTCCACATCCCTTAGTAATGTCTTCTCAGATGCTGAAATTTTATATATTAGGATCAAATAGTTGTTATCCTTGAAGAATCTAACCTGGTCATTGGAGTTCTGTAGTGGAATTATTATTTCACCAGCTTTAGATGTTCAAGGGTGGAAGAGTTTCTGTTGAAATGATTGGAGGAATATGATGCATCCACATTTTTTGAACCCTCAAATTTTTGTGATTATTGTTTGCGCGGAGGATTATTTAGTAAACTCTTATTTCTGCTATCTCAGATATGAGGTTCAAAGATGTTGCTTTGCCCAATGAATTCATTCTTTTTTAGGGTAGCTAGTATGTGATTTTATCACGAGATGTCATAATTTTGAAAATGTAAAATGTTGGAAGATTTAAAAGGAGATTATCTTAATGTAGAAATACATGGCATGGGTTAGGTAGTGGTGCTCAAATATTTTTTTCCCACGGAAGATCTAGAAGGTTTTCCCCACATTCTCCTAAATCTTGTCTTTTTGGGTCATCCATTTAGAGGAAGGAAAGTGGCCGTTTGGAAGAATTTGGTAAGAGCTTTTTTGTGGTCAATTTGGTTGGAAAGAAATCATAGGATCTTTGATTTCAAGGAAAATACCTATTCAACCTTTTTTCATTCTGTTCTTTTCCATGCTTCATCTTGGTGTAAAATCAATTCTGTTTTTTCATCCTTAAGCTTTTCTTCTCTTTTGTTCACTTGGAGATGTTTATTGCAACTCCTTTGAATTGCCCCCAAAAAAAAAAAAAAAAAAAAAAAATCATATATCAATGAATTTTTTTCTTACCAAAAAAAGTTTGTCCATTTGCATGTAAAGTAAGTAATTGGAATTTCTTACTTAGCTTATTAAGGTCCATTTCTGTTTGAATTTTGTAGTTTTTTATTATTATTTTATTCTAGTTCCTGATTGAAATTTCTCACTTTCAGATATCGGGATGATTACAGAGATAGGGATTATAGGAGGAGAAGTCGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGGAGGGAAAGAGAGAGGGAAAGAGATTATCGCAGGCGAAGCAGGAGCATCAGTCCCAGGCGTCCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGAAGATGAACGTAGAAGTCGTAGCCGCAGTCGTAGCCAAAGTCGTGGACGTAGTCGTTCTGTGGATAGGTTGTAAAGCAATTATAGTTGGGAATTTTATTTCTATTAATTTTTATCCAGTTGGAAAAAGTGGGGTTTTTATTTCTAATTAGTCATTGTTCTACATATTACAGTGCTTCTCCTGGAAGACGAAGCCTTAGTCCAAGGAGGAGTCTGTCTCCTCGAAGGAGTCTTTCACCTCGAAGGAGTCCATCTCCTAGGGGTGAAAGTCCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTCCTAGTAGTGTTTCACCAAGAGGTCAACCTGCTGATTCACGAAGCCCATCTCCACAAAACTCGGATGTTGATGTGAGTTGTTTCATGAGCTATTTTTAGGTGATTAGTCTGGACTTGGTTTAAGTAGTTAACTTCAACTTGCTTTAATATTGACAGAAGTGAATACCGATGGATGCAAGGAGAACTGTGGACATAACCAAGCAGTGCAGGAATGAATGTTTCGAGGGCACTCGATTAAAAATGTTGACAATAGTTCTAGTTTTGGTAGGACTTTCCTATGGTGTTTAATTATCTTATATTGAGCTTAATTTGCCTATCAACTATCTTGTATCAGTTTGATACTTTTTGGCTCTGCAGTCTGTATCCTTATTTCCAGTCATAGGATATAGCTTGGGACATCCTCTATATTTCTGTTCTCTACCCTGTAGAAATACTTTATTTTGAGCATCTGCGGTGTCCTTTTCTTTTCCCAGTATTTTCTTTTTCATCCTTTTTTTTTTCTTTTTATATATTTGAGCTATCCTGATTCATCATGAATCCTCTATTGGATTTTATAGTTATGTTCGGGGTAAAAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTATGTGATAGATGGGTGATCGTGACTTTGATGCCTGGTTGCAGCAGTTTGCTGATTTAACAGTATGATTGTCTATGCAGTATGATGTTGCTGTGGACAGTGTCTTAACTAATATTCACTGGATGTTAAAATTATTGGTAAGGTTTATGGTCACGTTTAAATGTTTTTAAAAACACAATAATGCTTTAGGATTTGATTTTTTAGATTATCCATTTTGGCCTATTAAAGTTTTGTGAAATTGTACCTCACCTGCAAGGAGATCTAGCGGCATTTGATATATAGGATTGACCCACCCATGTTGATCGTTTTTTTACTCTTAGCTGATGATGCATTTGAGGGTTATTGATTTTAATCGCGAAGGCTGGTCTAAGAAAAACTTAGCTGCAGGTTTGAACTTTGCATCGGAACATGATTAGCCATGGTAACATAAGTTTATAGTTTTGTGTATTATTTGAAGGGGTGGATATGAACTTACAGGTTGTTATCCCAAAATTTTAGATCAAACTCTTGCTGCTTGATGCGGTGACTGACTTATTGTAGCTTTTTGGAAACACGATTGTTGCTGTGGTGTTTGATACCAGATATACCTTTATTGATGTACGATAGACATGGGTCGATAGATTGATTCTGTAGCTGGCTGTTGCTGCCCTTGTGGGGTGAGGCCGGCAATGATGTTTGCAGTTGCTTTGACAATGGATGCATTGATGTTTGCTTGCCTCAAAATAAAGTTCTGCATGTATAATTGTTTATATACAAGGGAATTTATTTAATAAAAATTCTGGTATTTATTAATTTGCAACATTCGGATGGCTATTTGTTTGCTCTATGCTCTGTTGTTTGCTGCAACTACTTGGATTTGGATTTGGAAATATTTAATTTAGCCTGTTTGATCTCTTGTCTATTGCTTTGTATGATCTCGAAGTGGGATGATTTAAATGTGTCTTGACTGGCTGTAAATATTGGATGGACAGGAAAGTCTAAAGTGCAGAAGGAAAGAAAAATATGATTTT

mRNA sequence

CTCTCGAAGGATCTTTCTTCTCCGTCCTCTCGAACCCTAACCCTAATCTTCATCCTCCACTCCTACCAACATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGACACCTTCTCGCTTCTCGTGCTCAACATAACCTTCCGTACCACTGCTGATGACCTTTACCCACTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGACAGGCTAGATGGCACTGTGGTTGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCGAGATACAGGTCTAGAAGTCGTAGTCCACGGAGACGATATCGGGATGATTACAGAGATAGGGATTATAGGAGGAGAAGTCGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGGAGGGAAAGAGAGAGGGAAAGAGATTATCGCAGGCGAAGCAGGAGCATCAGTCCCAGGCGTCCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGAAGATGAACGTAGAAGTCGTAGCCGCAGTCGTAGCCAAAGTCGTGGACGTAGTCGTTCTGTGGATAGTGCTTCTCCTGGAAGACGAAGCCTTAGTCCAAGGAGGAGTCTGTCTCCTCGAAGGAGTCTTTCACCTCGAAGGAGTCCATCTCCTAGGGGTGAAAGTCCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTCCTAGTAGTGTTTCACCAAGAGGTCAACCTGCTGATTCACGAAGCCCATCTCCACAAAACTCGGATGTTGATAAGTGAATACCGATGGATGCAAGGAGAACTGTGGACATAACCAAGCAGTGCAGGAATGAATGTTTCGAGGGCACTCGATTAAAAATGTTGACAATAGTTCTAGTTTTGTTATGTTCGGGGTAAAAGTGACTGGCGCCTGATTGGCGGATGTTGATTTTGTGGCTGTTGATGCTATGTGATAGATGGGTGATCGTGACTTTGATGCCTGGTTGCAGCAGTTTGCTGATTTAACAGTATGATTGTCTATGCAGTATGATGTTGCTGTGGACAGTGTCTTAACTAATATTCACTGGATGTTAAAATTATTGCTGATGATGCATTTGAGGGTTATTGATTTTAATCGCGAAGGCTGGTCTAAGAAAAACTTAGCTGCAGGTTTGAACTTTGCATCGGAACATGATTAGCCATGATCAAACTCTTGCTGCTTGATGCGGTGACTGACTTATTGTAGCTTTTTGGAAACACGATTGTTGCTGTGGTGTTTGATACCAGATATACCTTTATTGATGTACGATAGACATGGGTCGATAGATTGATTCTGTAGCTGGCTGTTGCTGCCCTTGTGGGGTGAGGCCGGCAATGATGTTTGCAGTTGCTTTGACAATGGATGCATTGATGTTTGCTTGCCTCAAAATAAAGTTCTGCATGTATAATTGTTTATATACAAGGGAATTTATTTAATAAAAATTCTGGTATTTATTAATTTGCAACATTCGGATGGCTATTTGTTTGCTCTATGCTCTGTTGTTTGCTGCAACTACTTGGATTTGGATTTGGAAATATTTAATTTAGCCTGTTTGATCTCTTGTCTATTGCTTTGTATGATCTCGAAGTGGGATGATTTAAATGTGTCTTGACTGGCTGTAAATATTGGATGGACAGGAAAGTCTAAAGTGCAGAAGGAAAGAAAAATATGATTTT

Coding sequence (CDS)

ATGTCTCACTTTGGAAGGTCCGGTCCTCCAGATATTACAGACACCTTCTCGCTTCTCGTGCTCAACATAACCTTCCGTACCACTGCTGATGACCTTTACCCACTTTTCCACAAGTATGGTAAGGTTGTCGATATCTTCATCCCCAGAGATCGAAGGACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGACAGGCTAGATGGCACTGTGGTTGATGGACGAGAGATAACTGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGATCAGTGAAGCATTTCCAAAGTCGAGATACAGGTCTAGAAGTCGTAGTCCACGGAGACGATATCGGGATGATTACAGAGATAGGGATTATAGGAGGAGAAGTCGAAGTAGAAGCAGAAGCTTGGACAGGAGTGATCGTGATAGGCGTGGGAGGGAAAGAGAGAGGGAAAGAGATTATCGCAGGCGAAGCAGGAGCATCAGTCCCAGGCGTCCTAGTCCTGATTACTCCAAGGGGAGGGGAAGAGGACGCTATGAAGATGAACGTAGAAGTCGTAGCCGCAGTCGTAGCCAAAGTCGTGGACGTAGTCGTTCTGTGGATAGTGCTTCTCCTGGAAGACGAAGCCTTAGTCCAAGGAGGAGTCTGTCTCCTCGAAGGAGTCTTTCACCTCGAAGGAGTCCATCTCCTAGGGGTGAAAGTCCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTCCTAGTAGTGTTTCACCAAGAGGTCAACCTGCTGATTCACGAAGCCCATCTCCACAAAACTCGGATGTTGATAAGTGA

Protein sequence

MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK

Homology

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BLAST of Tan0008454 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.1e-68
Identity = 188/312 (60.26%), Postives = 209/312 (66.99%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DT+SLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRE 180
                               RSRSPRRR RDDYR++DYR+RSRSRS        DRR R 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS-------YDRRERH 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRSQSRG----RSRSVDSA 240
            E++RD+RRR+RS   R  SPD  K R RGRY++E RS SRS S S      RS S    
Sbjct: 181 EEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKT 240

Query: 241 SPGR----------RSLSPRRSLSPRRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSP- 275
           SP R          RS SPRRSLSPR     + SPS +  SPER  +  RSP+P S +P 
Sbjct: 241 SPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSPAPL 299

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BLAST of Tan0008454 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.1e-28
Identity = 109/242 (45.04%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 4   FGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +  S Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRS-DRDRRGRERERERDYRRRSRSISPRRPSPDY 183
           PRR           RRRSRSRSRS  RS  R R  R + R R  R RSRS S        
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRT-RSRSRSTSK------- 182

Query: 184 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSPSP 243
           S+   R + +    SRSRSRS+SR RSRS           S R S S  RS SP +SP  
Sbjct: 183 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPT-------SKRESNSRSRSKSPPKSPEE 217

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BLAST of Tan0008454 vs. ExPASy Swiss-Prot
Match: Q06A98 (Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-27
Identity = 109/242 (45.04%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 4   FGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRS-DRDRRGRERERERDYRRRSRSISPRRPSPDY 183
           PRR           RRRSRSRSRS  RS  R R  R + R R  R RSRS S        
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRT-RSRSRSTSK------- 182

Query: 184 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSPSP 243
           S+   R + +    SRSRSRS+SR RSRS   A       S R S S  RS SP +SP  
Sbjct: 183 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPA-------SKRESKSRSRSKSPPKSPEE 217

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BLAST of Tan0008454 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 108/242 (44.63%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 4   FGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRS-DRDRRGRERERERDYRRRSRSISPRRPSPDY 183
           PRR           RRRSRSRSRS  RS  R R  R + R R  R RSRS S        
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRT-RSRSRSTSK------- 182

Query: 184 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSPSP 243
           S+   R + +    SRSRSRS+SR RSRS          +S R S S  RS SP +SP  
Sbjct: 183 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPP-------PVSKRESKSRSRSKSPPKSPEE 217

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BLAST of Tan0008454 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 124.4 bits (311), Expect = 2.0e-27
Identity = 108/242 (44.63%), Postives = 137/242 (56.61%), Query Frame = 0


Query: 4   FGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYG--PNAERIHKGKISEAFPKSRYRSRSRS 123
           +    +A+ A+D +DG V+DGRE+ VQ A+YG  P++    +G     +    Y  RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRRRYRDDYRDRDYRRRSRSRSRSLDRS-DRDRRGRERERERDYRRRSRSISPRRPSPDY 183
           PRR           RRRSRSRSRS  RS  R R  R + R R  R RSRS S        
Sbjct: 123 PRR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRT-RSRSRSTSK------- 182

Query: 184 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSPSP 243
           S+   R + +    SRSRSRS+SR RSRS          +S R S S  RS SP +SP  
Sbjct: 183 SRSARRSKSKSSSVSRSRSRSRSRSRSRSPP-------PVSKRESKSRSRSKSPPKSPEE 217

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BLAST of Tan0008454 vs. NCBI nr
Match: KAG7022543.1 (Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 481.9 bits (1239), Expect = 3.8e-132
Identity = 269/293 (91.81%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPG------------RRSLSPRRSLSP 240
           SKGRGRGRY DERR+RSRS S+SRGRSRSV+SASPG            RRSLSPRRSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPQRSLSPRRSLSPRRSLSP 240

Query: 241 RRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
           +RSLSPRRSPSPRGESPERNGDGGRSPTP SVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

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BLAST of Tan0008454 vs. NCBI nr
Match: XP_022927926.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771.1 Serine/arginine-rich splicing factor SC35, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 481.9 bits (1239), Expect = 3.8e-132
Identity = 269/293 (91.81%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPG------------RRSLSPRRSLSP 240
           SKGRGRGRY DERR+RSRS S+SRGRSRSV+SASPG            RRSLSPRRSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 RRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
           +RSLSPRRSPSPRGESPERNGDGGRSPTP SVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

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BLAST of Tan0008454 vs. NCBI nr
Match: XP_023529917.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475.7 bits (1223), Expect = 2.7e-130
Identity = 268/305 (87.87%), Postives = 275/305 (90.16%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPG------------------------ 240
           SKGRGRGRY DERR+RSRS S+SRGRSRSV+SASPG                        
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 RRSLSPRRSLSPRRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQN 282
           RRSLSPRRSLSP+RSLSPRRSPSPRGESPERNGDGGRSPTP SVSPRGQP DSRSPSPQN
Sbjct: 241 RRSLSPRRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPVDSRSPSPQN 300

[Close]

BLAST of Tan0008454 vs. NCBI nr
Match: XP_022988862.1 (serine/arginine-rich splicing factor SC35-like [Cucurbita maxima])

HSP 1 Score: 471.5 bits (1212), Expect = 5.2e-129
Identity = 266/299 (88.96%), Postives = 274/299 (91.64%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRD+YRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDNYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPR----------- 240
           SKGRGRGRY DERR+RSRS S+SRGRSRSV+SASPGRRS SPRRSLSPR           
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 -------RSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
                  RSLSPRRSPSPRGESPERNGDGGRSPTP SVSPRGQ ADSRSPSPQNSDV+K
Sbjct: 241 QRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQSADSRSPSPQNSDVNK 299

[Close]

BLAST of Tan0008454 vs. NCBI nr
Match: XP_008455209.1 (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo])

HSP 1 Score: 467.6 bits (1202), Expect = 7.5e-128
Identity = 263/281 (93.59%), Postives = 271/281 (96.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSP 240
           DYSKGRGRGRY+DERRSRS SRS+SRGRSRSVDS SPGRRS SPRRS SPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGD-GGRSPTPSSVSPRGQPADSRSPSPQNSD 279
           SPR ESPERNG+ GGRSPT  SVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Tan0008454 vs. ExPASy TrEMBL
Match: A0A6J1EIV3 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=LOC111434683 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.9e-132
Identity = 269/293 (91.81%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPG------------RRSLSPRRSLSP 240
           SKGRGRGRY DERR+RSRS S+SRGRSRSV+SASPG            RRSLSPRRSLSP
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 RRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
           +RSLSPRRSPSPRGESPERNGDGGRSPTP SVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 QRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQPADSRSPSPQNSDVDK 293

[Close]

BLAST of Tan0008454 vs. ExPASy TrEMBL
Match: A0A6J1JE82 (serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LOC111486086 PE=4 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.5e-129
Identity = 266/299 (88.96%), Postives = 274/299 (91.64%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAE+I KGKISE FPKSR+RSRSR
Sbjct: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAEKIQKGKISEPFPKSRHRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180
           SPRRRYRD+YRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY
Sbjct: 121 SPRRRYRDNYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDY 180

Query: 181 SKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPR----------- 240
           SKGRGRGRY DERR+RSRS S+SRGRSRSV+SASPGRRS SPRRSLSPR           
Sbjct: 181 SKGRGRGRYVDERRNRSRSHSRSRGRSRSVNSASPGRRSPSPRRSLSPRRSLSPRRSLSP 240

Query: 241 -------RSLSPRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
                  RSLSPRRSPSPRGESPERNGDGGRSPTP SVSPRGQ ADSRSPSPQNSDV+K
Sbjct: 241 QRSLSPQRSLSPRRSPSPRGESPERNGDGGRSPTPRSVSPRGQSADSRSPSPQNSDVNK 299

[Close]

BLAST of Tan0008454 vs. ExPASy TrEMBL
Match: A0A1S3C0I4 (serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC103495427 PE=4 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.6e-128
Identity = 263/281 (93.59%), Postives = 271/281 (96.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRYRDDYRDRDYRR  RSRSRSRSLDRSDRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSP 240
           DYSKGRGRGRY+DERRSRS SRS+SRGRSRSVDS SPGRRS SPRRS SPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSVSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGD-GGRSPTPSSVSPRGQPADSRSPSPQNSD 279
           SPR ESPERNG+ GGRSPT  SVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPRDESPERNGNGGGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Tan0008454 vs. ExPASy TrEMBL
Match: A0A6J1CKN2 (serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC111012175 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 5.2e-127
Identity = 263/285 (92.28%), Postives = 269/285 (94.39%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGTVVDGREITVQFAKYGPNAERIHKGKISEAF K RYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFTKPRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRRYRDD RDRDYRR  RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP
Sbjct: 121 SPRRRYRDDNRDRDYRRRSRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSR--SRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRR 240
           DYSKGRGRGRY+DERRSRSR  SRSQSRG+SRSVDSASPG      RRS SPRRSLSP+R
Sbjct: 181 DYSKGRGRGRYDDERRSRSRSCSRSQSRGQSRSVDSASPG------RRSASPRRSLSPQR 240

Query: 241 SPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
           SPSPRGESP RNGDGGR+PTP SVSPRGQPADSRSPSPQNSDVDK
Sbjct: 241 SPSPRGESPVRNGDGGRTPTPRSVSPRGQPADSRSPSPQNSDVDK 279

[Close]

BLAST of Tan0008454 vs. ExPASy TrEMBL
Match: A0A0A0K7C0 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 259/281 (92.17%), Postives = 271/281 (96.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDITDT+SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120
           FVRYKYADEAQKAV+RLDGT+VDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR
Sbjct: 61  FVRYKYADEAQKAVERLDGTMVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSR 120

Query: 121 SPRRRYRDDYRDRDYRR--RSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSP 180
           SPRRR+RDDYRD+DYRR  RSRSRSRSLD++DRDRRGRERERERD+RRRSRSISPRRPSP
Sbjct: 121 SPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRERERERDHRRRSRSISPRRPSP 180

Query: 181 DYSKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRRSLSPRRSLSPRRSLSPRRSP 240
           DYSKGRGRGRY+DERRSRS SRS+SRGRSRSVDS SPGRRS SPRRS SPRRSLSPRRSP
Sbjct: 181 DYSKGRGRGRYDDERRSRSLSRSRSRGRSRSVDSGSPGRRSPSPRRSPSPRRSLSPRRSP 240

Query: 241 SPRGESPERNGDG-GRSPTPSSVSPRGQPADSRSPSPQNSD 279
           SPR ESPERNG+G GRSPT  SVSPRG+PADSRSPSPQNSD
Sbjct: 241 SPREESPERNGNGVGRSPTSRSVSPRGRPADSRSPSPQNSD 281

[Close]

BLAST of Tan0008454 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-69
Identity = 188/312 (60.26%), Postives = 209/312 (66.99%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DT+SLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRE 180
                               RSRSPRRR RDDYR++DYR+RSRSRS        DRR R 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS-------YDRRERH 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRSQSRG----RSRSVDSA 240
            E++RD+RRR+RS   R  SPD  K R RGRY++E RS SRS S S      RS S    
Sbjct: 181 EEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKT 240

Query: 241 SPGR----------RSLSPRRSLSPRRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSP- 275
           SP R          RS SPRRSLSPR     + SPS +  SPER  +  RSP+P S +P 
Sbjct: 241 SPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSPAPL 299

[Close]

BLAST of Tan0008454 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-69
Identity = 188/312 (60.26%), Postives = 209/312 (66.99%), Query Frame = 0


Query: 1   MSHFGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DT+SLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYR---- 120
           FVRYKY DEA KAV+RLDG VVDGREITVQFAKYGPNAE+I KG++ E  PKSR      
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 -------------------SRSRSPRRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRE 180
                               RSRSPRRR RDDYR++DYR+RSRSRS        DRR R 
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRS-------YDRRERH 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYEDERRSRSRSRSQSRG----RSRSVDSA 240
            E++RD+RRR+RS   R  SPD  K R RGRY++E RS SRS S S      RS S    
Sbjct: 181 EEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNESRSHSRSLSASPARRSPRSSSPQKT 240

Query: 241 SPGR----------RSLSPRRSLSPRRSLSPRRSPSPRGESPERNGDGGRSPTPSSVSP- 275
           SP R          RS SPRRSLSPR     + SPS +  SPER  +  RSP+P S +P 
Sbjct: 241 SPAREVSPDKRSNERSPSPRRSLSPRSPALQKASPS-KEMSPERRSN-ERSPSPGSPAPL 299

[Close]

BLAST of Tan0008454 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-16
Identity = 111/276 (40.22%), Postives = 135/276 (48.91%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76
           SLLV N+      +DL   F ++G V DI++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYR 136
           +DG ++ GRE+TV FA+                      R +    R R R   R RD R
Sbjct: 97  MDGYLLLGRELTVVFAE--------------------ENRKKPTEMRARERGGGRFRD-R 156

Query: 137 RRSRSRSRSLDRSDRDRRGRERERERDY------RRRSRSISPRRPSPDYSKGRGRGRYE 196
           RR+  R  S  RS   RRGR R R  DY      R   RSISPR    D  +   R    
Sbjct: 157 RRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPAS 216

Query: 197 DERRSRSRSRSQSRGRSRSVDSASPGRR-SLSPRRSLSP----RRSLSPRRSPSPRGESP 256
           D   SR RS +  RG+SRS+ S SP R  S SPRRS SP     RS+SPRRS S    SP
Sbjct: 217 D--GSRGRSLTPVRGKSRSL-SPSPRRSISRSPRRSRSPSPKRNRSVSPRRSIS---RSP 276

Query: 257 ERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
            R+    RSP  S  S   +PA SRS SP     D+
Sbjct: 277 RRS----RSPRRSRRSYTPEPARSRSQSPHGGQYDE 281

[Close]

BLAST of Tan0008454 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 77.0 bits (188), Expect = 2.6e-14
Identity = 111/288 (38.54%), Postives = 139/288 (48.26%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTG------------DSRGFAFVRY 76
           SLLV N+      +DL   F ++G V DI++PRD  TG            D RGF FV++
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96

Query: 77  KYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKSRYRSRSRSPRR 136
               +A  A   +DG ++ GRE+TV FA+   N ++            +  R+R R    
Sbjct: 97  MDPADAADAKHHMDGYLLLGRELTVVFAE--ENRKK-----------PTEMRARERGGGS 156

Query: 137 RYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDY------RRRSRSISPRRPSP 196
           R+RD       RRR+  R  S  RS   RRGR R R  DY      R   RSISPR    
Sbjct: 157 RFRD-------RRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISPREERY 216

Query: 197 DYSKGRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGRR-SLSPRRSLSP----RRSLS 256
           D  +   R    D   SR RS +  RG+SRS+ S SP R  S SPRRS SP     RS+S
Sbjct: 217 DGRRSYSRSPASD--GSRGRSLTPVRGKSRSL-SPSPRRSISRSPRRSRSPSPKRNRSVS 276

Query: 257 PRRSPSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPSPQNSDVDK 282
           PRRS S    SP R+    RSP  S  S   +PA SRS SP     D+
Sbjct: 277 PRRSIS---RSPRRS----RSPRRSRRSYTPEPARSRSQSPHGGQYDE 294

[Close]

BLAST of Tan0008454 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 75.5 bits (184), Expect = 7.7e-14
Identity = 105/276 (38.04%), Postives = 140/276 (50.72%), Query Frame = 0


Query: 4   FGRSGPPDITDTFSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F ++G V DI++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDLPT--SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAVDRLDGTVVDGREITVQFAKYGPNAERIHKGKISEAFPKS-RYRSRSRSP 123
           +    +A +A  ++DG ++ GRE+TV FA+   N ++  + +  +   +S R++ R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RRRYRDDYRDRDYRRRSRSRSRSLDRSDRDRRGRERERERDYRRRSRSISPRRPSPDYSK 183
            R  R     R   RRSRSRSR  +                 R +SRS+SP+        
Sbjct: 147 PRYSRSPPPRRG--RRSRSRSRGYNSPPAK------------RHQSRSVSPQ-------- 206

Query: 184 GRGRGRYEDERRSRSRSRSQSRGRSRSVDSASPGR---RSLSPRRSLSPR--RSLSPRRS 243
                RYE E   RS SRS     SR V S SPGR    S SPRRS+SPR  RS +P ++
Sbjct: 207 ---DRRYEKE---RSYSRSPPHNGSR-VRSGSPGRVKSHSRSPRRSVSPRKNRSYTPEQA 261

Query: 244 PSPRGESPERNGDGGRSPTPSSVSPRGQPADSRSPS 274
              R +SP       RSPTP    PRG     RSPS
Sbjct: 267 ---RSQSPVPR--QSRSPTP---VPRGAQNGDRSPS 261

The following BLAST results are available for this feature:

BLAST of Tan0008454 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	4.1e-68	60.26	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	9.1e-28	45.04	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q06A98	1.2e-27	45.04	Serine/arginine-rich splicing factor 2 OS=Sus scrofa OX=9823 GN=SRSF2 PE=2 SV=1	[more]
Q3MHR5	2.0e-27	44.63	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	2.0e-27	44.63	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]

BLAST of Tan0008454 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022543.1	3.8e-132	91.81	Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022927926.1	3.8e-132	91.81	serine/arginine-rich splicing factor SC35-like [Cucurbita moschata] >KAG6588771....	[more]
XP_023529917.1	2.7e-130	87.87	serine/arginine-rich splicing factor SC35-like [Cucurbita pepo subsp. pepo]	[more]
XP_022988862.1	5.2e-129	88.96	serine/arginine-rich splicing factor SC35-like [Cucurbita maxima]	[more]
XP_008455209.1	7.5e-128	93.59	PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis melo]	[more]

BLAST of Tan0008454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIV3	1.9e-132	91.81	serine/arginine-rich splicing factor SC35-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JE82	2.5e-129	88.96	serine/arginine-rich splicing factor SC35-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3C0I4	3.6e-128	93.59	serine/arginine-rich splicing factor SC35 OS=Cucumis melo OX=3656 GN=LOC10349542...	[more]
A0A6J1CKN2	5.2e-127	92.28	serine/arginine-rich splicing factor SC35 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A0A0K7C0	1.5e-126	92.17	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062820 PE=4 SV...	[more]

BLAST of Tan0008454 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	2.9e-69	60.26	ortholog of human splicing factor SC35	[more]
AT5G64200.2	2.9e-69	60.26	ortholog of human splicing factor SC35	[more]
AT1G55310.1	8.2e-16	40.22	SC35-like splicing factor 33	[more]
AT1G55310.3	2.6e-14	38.54	SC35-like splicing factor 33	[more]
AT3G13570.1	7.7e-14	38.04	SC35-like splicing factor 30A	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 2.9E-24 score: 96.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..88 e-value: 2.1E-20 score: 72.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 18.939054
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 17..90 e-value: 0.0066 score: 25.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..105 e-value: 6.0E-27 score: 96.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..281
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..238
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..281
None	No IPR available	PANTHER	PTHR23147:SF168	SERINE/ARGININE-RICH SPLICING FACTOR SC35-LIKE	coord: 1..280
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..280
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008454.1	Tan0008454.1	mRNA
Tan0008454.2	Tan0008454.2	mRNA
Tan0008454.3	Tan0008454.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding