Tan0008440 (gene) Snake gourd v1

Overview


Name	Tan0008440
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Photosystem II PsbX
Location	LG09: 63308240 .. 63308623 (-)
RNA-Seq Expression	Tan0008440
Synteny	Tan0008440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTTCCGCCGTTTCAATGGCTTTGCCGTTCACCTCCGCCACCCACAAGCGCCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTACCTCTCGCAAGGCGATCAACGTCGCCGCTCCTTCATCCAACGGGAGGCTCGTCGTCGTCGTCCGATCTTCCTTGAAGGAGAAGGCCGTCACTGGACTTACGGCCGCCGCGCTGACGGCGGCGATGGTGATTCCGGAGGTTGCAGAGGCTGCCGGTCCGGGAGTGTCGCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTTGTTGTGTTTGCCATATTGGGAGCTGTCATCGGCGTCGCGAACTTCGATCCGGTCAAGCGTAGCTGA

mRNA sequence

ATGGCTTCCACTTCCGCCGTTTCAATGGCTTTGCCGTTCACCTCCGCCACCCACAAGCGCCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTACCTCTCGCAAGGCGATCAACGTCGCCGCTCCTTCATCCAACGGGAGGCTCGTCGTCGTCGTCCGATCTTCCTTGAAGGAGAAGGCCGTCACTGGACTTACGGCCGCCGCGCTGACGGCGGCGATGGTGATTCCGGAGGTTGCAGAGGCTGCCGGTCCGGGAGTGTCGCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTTGTTGTGTTTGCCATATTGGGAGCTGTCATCGGCGTCGCGAACTTCGATCCGGTCAAGCGTAGCTGA

Coding sequence (CDS)

ATGGCTTCCACTTCCGCCGTTTCAATGGCTTTGCCGTTCACCTCCGCCACCCACAAGCGCCTCTCCAACGACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTACCTCTCGCAAGGCGATCAACGTCGCCGCTCCTTCATCCAACGGGAGGCTCGTCGTCGTCGTCCGATCTTCCTTGAAGGAGAAGGCCGTCACTGGACTTACGGCCGCCGCGCTGACGGCGGCGATGGTGATTCCGGAGGTTGCAGAGGCTGCCGGTCCGGGAGTGTCGCCGTCGCTCAAGAACTTCTTGCTCAGCATTGCCGCCGGTGGAGTTGTTGTGTTTGCCATATTGGGAGCTGTCATCGGCGTCGCGAACTTCGATCCGGTCAAGCGTAGCTGA

Protein sequence

MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSLKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVANFDPVKRS

Homology

[Close]

BLAST of Tan0008440 vs. NCBI nr
Match: KAG7023687.1 (Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.8 bits (460), Expect = 3.7e-42
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSS 60
           MASTSAVS+ALP T+ATHKRLSN AFFNPLP SSSS SRKAI  AAP+SNG L V VRSS
Sbjct: 818 MASTSAVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAI-AAAPTSNGSL-VAVRSS 877

Query: 61  LKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           LKEKA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGV+
Sbjct: 878 LKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVS 937

Query: 121 NFDPVKR 127
           NFDPVKR
Sbjct: 938 NFDPVKR 942

[Close]

BLAST of Tan0008440 vs. NCBI nr
Match: XP_022960741.1 (uncharacterized protein LOC111461452 [Cucurbita moschata])

HSP 1 Score: 180.6 bits (457), Expect = 8.2e-42
Identity = 109/127 (85.83%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSS 60
           MASTS VS+ALP T+ATHKRLSN AFFNPLP SSSS SRKAI  AAP+S+GRL V VRSS
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAI-AAAPTSSGRL-VAVRSS 60

Query: 61  LKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           LKEKA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGV+
Sbjct: 61  LKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVS 120

Query: 121 NFDPVKR 127
           NFDPVKR
Sbjct: 121 NFDPVKR 125

[Close]

BLAST of Tan0008440 vs. NCBI nr
Match: XP_038878912.1 (uncharacterized protein LOC120071001 [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 7.0e-41
Identity = 108/127 (85.04%), Postives = 112/127 (88.19%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSL 60
           MASTSA+SMALP T ATHK LSNDAFFNPLPS    SRKAI  AAP SNGR +V VRSSL
Sbjct: 1   MASTSALSMALPLTYATHKPLSNDAFFNPLPSFK--SRKAI-AAAPKSNGR-IVAVRSSL 60

Query: 61  KEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVAN 120
           KEKAV G+TAAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGVAN
Sbjct: 61  KEKAVAGITAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGAVVVAILGAVIGVAN 120

Query: 121 FDPVKRS 128
           FDPVKRS
Sbjct: 121 FDPVKRS 123

[Close]

BLAST of Tan0008440 vs. NCBI nr
Match: XP_022987287.1 (uncharacterized protein LOC111484883 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 106/127 (83.46%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSS-SSTSRKAINVAAPSSNGRLVVVVRSS 60
           MASTS VS+ALP T+ATHKRLSN AFFNPLP+S SS  RKAI  AAP+SNGRL V VRSS
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAI-AAAPTSNGRL-VAVRSS 60

Query: 61  LKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           LKEKA+TG++AAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGV+
Sbjct: 61  LKEKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVS 120

Query: 121 NFDPVKR 127
           NFDPVKR
Sbjct: 121 NFDPVKR 125

[Close]

BLAST of Tan0008440 vs. NCBI nr
Match: XP_023516825.1 (uncharacterized protein LOC111780616 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-39
Identity = 108/127 (85.04%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSS 60
           MASTS VS+ALP TSATHKRLSN AFFNPLP SSSS SRKAI    P+SNGRL V VRSS
Sbjct: 1   MASTSTVSLALPLTSATHKRLSNHAFFNPLPASSSSRSRKAI-AGVPTSNGRL-VAVRSS 60

Query: 61  LKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           LK KA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGV+
Sbjct: 61  LK-KAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVS 120

Query: 121 NFDPVKR 127
           NFDPVKR
Sbjct: 121 NFDPVKR 124

[Close]

BLAST of Tan0008440 vs. ExPASy TrEMBL
Match: A0A6J1H8G2 (uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC111461452 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-42
Identity = 109/127 (85.83%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLP-SSSSTSRKAINVAAPSSNGRLVVVVRSS 60
           MASTS VS+ALP T+ATHKRLSN AFFNPLP SSSS SRKAI  AAP+S+GRL V VRSS
Sbjct: 1   MASTSTVSLALPLTNATHKRLSNHAFFNPLPASSSSRSRKAI-AAAPTSSGRL-VAVRSS 60

Query: 61  LKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           LKEKA+TGLTAAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGV+
Sbjct: 61  LKEKAITGLTAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVS 120

Query: 121 NFDPVKR 127
           NFDPVKR
Sbjct: 121 NFDPVKR 125

[Close]

BLAST of Tan0008440 vs. ExPASy TrEMBL
Match: A0A6J1J9Y5 (uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 9.8e-41
Identity = 106/127 (83.46%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSS-SSTSRKAINVAAPSSNGRLVVVVRSS 60
           MASTS VS+ALP T+ATHKRLSN AFFNPLP+S SS  RKAI  AAP+SNGRL V VRSS
Sbjct: 1   MASTSRVSLALPLTTATHKRLSNHAFFNPLPASPSSRYRKAI-AAAPTSNGRL-VAVRSS 60

Query: 61  LKEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           LKEKA+TG++AAALTA+MVIPEVAEAAGPGVSPSLKNFLLSIAAGG VV AILGAVIGV+
Sbjct: 61  LKEKAITGVSAAALTASMVIPEVAEAAGPGVSPSLKNFLLSIAAGGTVVVAILGAVIGVS 120

Query: 121 NFDPVKR 127
           NFDPVKR
Sbjct: 121 NFDPVKR 125

[Close]

BLAST of Tan0008440 vs. ExPASy TrEMBL
Match: A0A1S3BRD2 (uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 106/127 (83.46%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSL 60
           MASTSAVSMALPFT ATHK LSNDAFFNPLPS    SRK I  AAP SNGR +V VRSSL
Sbjct: 1   MASTSAVSMALPFTHATHKPLSNDAFFNPLPSFK--SRKPI-AAAPISNGR-IVAVRSSL 60

Query: 61  KEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVAN 120
           KEKAV G+TAAAL A+MVIPEVAEAAG GVSPSLKNFLLSIAAGG VV AI GAVIGVAN
Sbjct: 61  KEKAVAGITAAALAASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGAVVVAIFGAVIGVAN 120

Query: 121 FDPVKRS 128
           FDPVKRS
Sbjct: 121 FDPVKRS 123

[Close]

BLAST of Tan0008440 vs. ExPASy TrEMBL
Match: A0A0A0LWL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595840 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.6e-38
Identity = 103/127 (81.10%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSL 60
           MASTSA+SMALPFT AT K LSNDAFFNPLPS    SRK I   AP SNGR ++ VRSS 
Sbjct: 1   MASTSALSMALPFTHATRKPLSNDAFFNPLPSFK--SRKPI-ATAPISNGR-ILAVRSSF 60

Query: 61  KEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVAN 120
           KEKAV G++AAALTA+MVIPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGAVIGVAN
Sbjct: 61  KEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGAVIGVAN 120

Query: 121 FDPVKRS 128
           FDPVKRS
Sbjct: 121 FDPVKRS 123

[Close]

BLAST of Tan0008440 vs. ExPASy TrEMBL
Match: A0A6J1HV97 (uncharacterized protein LOC111467755 OS=Cucurbita maxima OX=3661 GN=LOC111467755 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.6e-37
Identity = 103/126 (81.75%), Postives = 107/126 (84.92%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSL 60
           MAS  AVSMALP T A+ KRLSNDAFFNPLP   S SRKAI  AAP      +VVV SSL
Sbjct: 1   MASAPAVSMALPLTYASQKRLSNDAFFNPLP---SRSRKAI-PAAPR-----LVVVHSSL 60

Query: 61  KEKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVAN 120
           KEKAVTGLTAAAL+AAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGAVIGV+N
Sbjct: 61  KEKAVTGLTAAALSAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVIAILGAVIGVSN 117

Query: 121 FDPVKR 127
           FDPVKR
Sbjct: 121 FDPVKR 117

[Close]

BLAST of Tan0008440 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 102.1 bits (253), Expect = 3.5e-22
Identity = 66/128 (51.56%), Postives = 88/128 (68.75%), Query Frame = 0


Query: 1   MASTSAVSMALPFTSATHKRLSNDAFFNPLPSSSSTSRKAINVAAPSSNGRLVVVVRSSL 60
           MASTSA+S+  P       +  +  F  PLP   S        A  ++ GR   +   +L
Sbjct: 1   MASTSAMSLVTPL-----NQTRSSPFLKPLPLKPSK-------ALVATGGRAQRLQVKAL 60

Query: 61  K-EKAVTGLTAAALTAAMVIPEVAEAAGPGVSPSLKNFLLSIAAGGVVVFAILGAVIGVA 120
           K +KA+TG++AAALTA+MVIPE+AEAAG G+SPSLKNFLLSIA+GG+V+  I+G V+GV+
Sbjct: 61  KMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVS 116

Query: 121 NFDPVKRS 128
           NFDPVKR+
Sbjct: 121 NFDPVKRT 116

The following BLAST results are available for this feature:

BLAST of Tan0008440 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023687.1	3.7e-42	86.61	Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022960741.1	8.2e-42	85.83	uncharacterized protein LOC111461452 [Cucurbita moschata]	[more]
XP_038878912.1	7.0e-41	85.04	uncharacterized protein LOC120071001 [Benincasa hispida]	[more]
XP_022987287.1	2.0e-40	83.46	uncharacterized protein LOC111484883 [Cucurbita maxima]	[more]
XP_023516825.1	1.0e-39	85.04	uncharacterized protein LOC111780616 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0008440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H8G2	4.0e-42	85.83	uncharacterized protein LOC111461452 OS=Cucurbita moschata OX=3662 GN=LOC1114614...	[more]
A0A6J1J9Y5	9.8e-41	83.46	uncharacterized protein LOC111484883 OS=Cucurbita maxima OX=3661 GN=LOC111484883...	[more]
A0A1S3BRD2	1.4e-39	83.46	uncharacterized protein LOC103492356 OS=Cucumis melo OX=3656 GN=LOC103492356 PE=...	[more]
A0A0A0LWL3	4.6e-38	81.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595840 PE=4 SV=1	[more]
A0A6J1HV97	8.6e-37	81.75	uncharacterized protein LOC111467755 OS=Cucurbita maxima OX=3661 GN=LOC111467755...	[more]

BLAST of Tan0008440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	3.5e-22	51.56	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 89..127 e-value: 5.2E-10 score: 40.9
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..127
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..127
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 90..127 e-value: 1.2E-15 score: 57.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008440.1	Tan0008440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane