Tan0008302 (gene) Snake gourd v1

Overview
NameTan0008302
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG03: 80343853 .. 80344029 (-)
RNA-Seq ExpressionTan0008302
SyntenyTan0008302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCAATCAACACGGCTGGGCAACACCAAGAAATCGGCGAAGATCAAGTGAATGGAGGAACAGTCTGGCTGAAGGAATTAAACCATAAGTTTAGATTGAAGACAGAAATGGAAGGTCCCATGAACATCAAGAAATCGGAAAGGACCGATAACGAAGCTGTCATGTTAGATTGA

mRNA sequence

ATGAAACCAATCAACACGGCTGGGCAACACCAAGAAATCGGCGAAGATCAAGTGAATGGAGGAACAGTCTGGCTGAAGGAATTAAACCATAAGTTTAGATTGAAGACAGAAATGGAAGGTCCCATGAACATCAAGAAATCGGAAAGGACCGATAACGAAGCTGTCATGTTAGATTGA

Coding sequence (CDS)

ATGAAACCAATCAACACGGCTGGGCAACACCAAGAAATCGGCGAAGATCAAGTGAATGGAGGAACAGTCTGGCTGAAGGAATTAAACCATAAGTTTAGATTGAAGACAGAAATGGAAGGTCCCATGAACATCAAGAAATCGGAAAGGACCGATAACGAAGCTGTCATGTTAGATTGA

Protein sequence

MKPINTAGQHQEIGEDQVNGGTVWLKELNHKFRLKTEMEGPMNIKKSERTDNEAVMLD
Homology
BLAST of Tan0008302 vs. NCBI nr
Match: KAA0052515.1 (hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK13310.1 hypothetical protein E5676_scaffold255G009330 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 1  MKPINTAGQHQEIGEDQVNGGTVWLKELNHKFRLKTEMEGPMNIKKSERTDNEAVMLD 59
          MKPIN AGQHQEI EDQVN GTVWL++ + KFRL T+MEGP+NI + ERT+NEA+MLD
Sbjct: 1  MKPINGAGQHQEIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

BLAST of Tan0008302 vs. NCBI nr
Match: KGN49433.1 (hypothetical protein Csa_004453 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-13
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 1  MKPINTAGQHQEIGEDQVNGG-TVWLKELNHKFRLKTEMEGPMNIKKSERTDNEAVMLD 59
          MKPIN AGQHQ I EDQVN G TVW+++ + KFRL T+MEGP+NI ++ERT+NEA+MLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

BLAST of Tan0008302 vs. ExPASy TrEMBL
Match: A0A5D3CPG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009330 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.5e-16
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 1  MKPINTAGQHQEIGEDQVNGGTVWLKELNHKFRLKTEMEGPMNIKKSERTDNEAVMLD 59
          MKPIN AGQHQEI EDQVN GTVWL++ + KFRL T+MEGP+NI + ERT+NEA+MLD
Sbjct: 1  MKPINGAGQHQEIDEDQVNAGTVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

BLAST of Tan0008302 vs. ExPASy TrEMBL
Match: A0A0A0KIR4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 1  MKPINTAGQHQEIGEDQVNGG-TVWLKELNHKFRLKTEMEGPMNIKKSERTDNEAVMLD 59
          MKPIN AGQHQ I EDQVN G TVW+++ + KFRL T+MEGP+NI ++ERT+NEA+MLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0052515.11.8e-1572.41hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK133... [more]
KGN49433.13.7e-1367.80hypothetical protein Csa_004453 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A5D3CPG08.5e-1672.41Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KIR41.8e-1367.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008302.1Tan0008302.1mRNA