Tan0008272 (gene) Snake gourd v1

Overview
NameTan0008272
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein .
LocationLG08: 21415065 .. 21419925 (-)
RNA-Seq ExpressionTan0008272
SyntenyTan0008272
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGTTTTAGGGTTCGGAGTTGACAGAATTCACAGTCGGAAATGGCAGCTTCTGTTGCACTCAGATCCTCCTGTCTCCGAGCAATTTGTAGAATATCCACCAGTTCCGCCACCAGGAATGTCTCCGTTTCATCGGTGCTTCCTTCGGTTCGCTCAAGTTTCGTTTCTCGAAGAAATTCATTTTCCCCTCACCCTCTAAGGTTGCTGCCTCCTCCTTCAGATTCCTCTTCCTGTTACGATGTTACTTTCTTTTTTCCTCTATTTTTCATTCTGATGCCGTGTTTTTAGGTTGTTGCGACGTGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCGCCTCCGTAGAAGGTTAGTCTTCCTCTGTTTCTTGCTTCCTACTTAAAGCTCTTGTTTTTGAGTTGGTTTCATTCGCATTGAATTTGAGTAGCAGTCAACTTTCTTAATTATAGAAGTAGTTCCTCAGAATTTATGTTGGTGCAGCCAAATAATTTTAGGCATCGATAACTAGCCAATTAAAATTGACTTCCATAGTACCTTACTACCGTTCAGTTAGCTGAAACGCTGAATTTCATTTTTGGTATTGAAAATATTTTAGAATTCATAATGACAAAAAAAACTAGACTCGTGCAAAAGTATTTTCAATTTGTATGTTAACTGCCACCTATCAAAATGGTCGACGATCTCCATTATGGAAAGTGCAAGAGATGCATTATTCATTTTGTGAGTTTTGATGGGAATTGAGGAGCTGTCTGGATTATGGTGTATTGTCTAGAATCTAACCATGATCATGTCAGCATCCTGGATGTGATAGAATTGTGTCCTGCATAATGTTTATCGTATGTTGAGTCTGGACCAATCGAGAGGAAAGTGGTTTAATGCTGGTGAATGAATGTCAAGAATAAAATCAGCGGGCTCCAGAGAGAACAATGGTCAATTATCAGGAGATCTAAGGAGGTGTTTGGCCCATTGGTTTGGGTTAGGGTGGTGTTGGGTTTCAAACCCAACACCATGTTTGGTACAAAGGGTTTCAAAACCAAGGTTTTGAAACACAACCTCATGGGTTTTGTACCATGTTTTCTACTTCTATTTGTCGTTTTTCATTTTCGATGACCACTTCAACAACAATTTCGATGACAATTTCAACAACAACTCCGACGACTACACCGGTGTCCCAACCAACTTCGATGACATCTCAAACGACCACCAACAATGACAACCCGACGATTACACTGGCAACTCAACCAACTCCGATGAAAACTTCGATAATCACACCGACGACTCGACCAACTCTGATGAAAATTCCGACAACCGCACCGGCGACCCGACCAACTCCGATGACAATTCCGACGACCACACCTGCGACCTCGACCAACTCTGATGACAATTCCGATGACCACACCGGCGACCCCGACCAACTCCGATGACAATTCCGACCACCACACCGACAACCCCGACCAACTCCGATGACAATTCCAATGACCACACCGGCGATCCCAACCAACTCCGATGACAATTCCGACAACCACACCGGCGACCCCGACCAACTCCGATGACAATTCCGACCACCACACCGACAACCTCGACCAACTCCGATAACAATTTCAACGACCACACCGGCGACTCCAACCAACTCCGATGACAATTCCGACGACCACACCGGCGACCCCGTCAAACTCTGATGACAATTTTGGCGACCACACTGGCGACCCCGACCAACTCCGATGACAATTTCGACGACTACACCCGCGACCAACTAACTCTAATGGCAACTCCGATGACTGCTTGATCACTACCGGTAACGAAAACTTCAACGACCACATCGACGACCTGACCATCGCGACGATTACCTCCATCGATAACTACAATGAAAACTCTATAGATTAATTTAACGATCGCCCCTGCGATTCAACCACCCAAACAACTTGATAATTTGATGCCCCAACCACCGCCAATCCGAAAGAGTTTTTCAACATGAGACATTCATCCGCTTGAAATGTCATTGAGAGAGCATTCGGTATGCTGAACGGTCGATGGGCGATACTAAGAGGAAAGTCTTTTTACCCAGTAGAAGTCTAGTGCAGGAGTATAATTGCGTTGTTTGTTGCACAACTTAATTATACAAAAGATGAACCCAGATCCCACATTTGAGGAGGCACACACAAGTGACCCCGATTCAACTGGGATGAACACAAACAACGTTGGATTTGTAGAGACAACAGATGTCTGGTCTGAATGGAGGGAACATCTTGCAAACCATATATGGATGAATTGGAATGGGAATTGACGATTGTGAATTAAACTCATATATATATATTGATTAGATTTTGTATATATGCACTACGTACATTGTGGTGGATAATATTTTTGTGTAAATATTATTAATATAATATTAGTAGCTCGAGTGAACGAACTATATGCAAAATTGAAGACAATCCCAGGGATGACAAGGTAGGACTGCATGGTTGTTGCAAAAACGCTTCTCTCGAATAGTATGATGTTGAACTCTTTCTTTGCATGAACCACCCCAAATTGGAAGTATGATTATGGTGTGGAAGTTCTGGAGAAAGCACCGGGAACCTGATTCTATTTCCATCTACCACTCTCTATGACTTTTTTAGAATTTTATGTTTAGCTGAACTTCGTTGGACAACTATCTCTACTTTTTCTTATTATTTATTTAAGTTAGCGTAAAATGTTATCTTTAACCAACATATTTCTATGTATCGATTGTTTTACTTTATCATTGGCGCCACAATTCTTACATTACACATTACAACATATAGTTAGTTGTTTTACTTTATGTCATCATGAGTGAAGTGCATTATAAATATAATATATACTTGTACAAAGTATTATAAACTCAAATTAGATACATTAGATAAATTGTTGATATGTAATTATGTAGTTATGAAGTTAAAAAATAAAACAAGAACACAAAATTACTATATTTAAAAAATATTAAGTATTTATTTTAGAAAAAACAGACTGCATACATCTAACCCAACACAACACTGCACCCCAAACACTGTTTTATGCAACCCATTTCAGCACAACACTGCACCTCAAACACTGTTTTCTGCAACACAGCTTAACACAACCCTGCGCTCCAAATACTGTTTTCTGCAAGTCCAGTATTTCTGATTCCAACACAACGCGCCAAACAGCCCCTTAATGTTTCCCTGCTGTATGACTTGTCAAATAAATCTGCAATTTAGTTGAAATGGATTTCTTATGTGTGATTTCTCTAAAATGATGAAAATTAGTGACGTCCTTGTTACCAGTCAGAAGGAACCTCATATTCGTCATCTTTGTGGCCCCTCGAAGTTTCCCGTCTGCTCGGTTTCTGACGAGTACTGAACTCACAGTCTTATTTCTGATGGTTCTCTTGGGAGTGACTCCTTTAGATAATTGAGGCAATAAAGTAATATCTCCTCCGTGAGTCAATGTTCATATGAACACTTTTCTAGAAAATTTAACTCCAAATCAAACTTCATAAAGTACTCACTCTTCTTTTCGTTCATTTATTGGAACAGAAGTTGAAAGAAGTCTCCTTCCATACAGCCTCATAATTTTGATGAGATGCCTGATAAATGCTGCAAGTTTTGAGAGAAGTTGTGTCATTGGAAACAAGAGTAAATGCAATTCCAGAGAAATGATTCCCTTCTGTGTCCTTATCTAGAACTCACCATTATGGTCGGAAACGGAGGAGCATCTTCTTTGAGTATTCTTGTTCATGTTCATCTTCGTGATTAGCGACCAAGAAAGTGAGCCAACTTCATTAGGTTTGAAGTTTTGATCACTTCTTATATATTAAAAAAAGGTTGAGATCACTAGAGTCAGGTGCAAAAACACGAGCTTAAAACTAATTTGTGACAGTGACACTTTTATATGTTTGAATATTAGATTCAGGAAGCTATCTGAAAGTTCTATAGCTGCCATGACATGCCTCACACTATGATTGCTTCTCTTGATTTTAAAACAATATACTGTACGGGTTCAATTTCCCTTTACAACAGCATTTTCTTTGAAAGAATGGGACAATTATTTGACGTGGTAATCTCTACCTGTACGATAAAAGTGGAGTGGAATGGAATCTTGGAATAAAATCGATAAATTTTTTTTTATAAGAACAAAATCGACAAATTTCAAAAGAGGAAAATAGATAGACAAACTAATGAGGTGATTATTATGCCTTTTGCTTTCTGATACATGGTTACAGTTCTGAAATTTTTAGAAATCTTGTAACTGTTATTTGATAGTGTGATTTTGACCATGGTTTCTAGCTTCAGTATCAGTTATTGACTTAAATTTTTTGGTGCACAACTGCTGAGATAGATATATGTGTTAGCCAAATGCTATGAACCATAACAATGTTTTTGATACCTTTTCTCAAACTTGATAACAGGTAGATTTGTGAACTATCTCAGCCCTATCTAGCACCAAATGTTTGTAGAGATGCAGAGTTTTCTTCTTGTGTATTAGATTGCCAGCATCACTTCATAATGTCTTCAGCTGTTGATTATGAAGACATGGTTTCTTCGGTTCCTCAAGTTGATTTTACCCAATTAAGTATATTTATATTACATTGAGCAGCCAATTTTTCTATAACTTGATAGTCTCCTTTTTATCATTTTGTTGTTCTAAGCACGGGGTGACACCCCTAATTGGCCAAATTCCTACCAGGTTAGTCATACAACTATTTTCTGATCCAGATGATTGCTTAATTTCAAAGTTATAATGTAAATGTGTTGAAATTAGACATAGATGATTACAATGAAATAGGAATGGTTCTTACCCGCTACAAAAATGACAATTAG

mRNA sequence

GGAGGTTTTAGGGTTCGGAGTTGACAGAATTCACAGTCGGAAATGGCAGCTTCTGTTGCACTCAGATCCTCCTGTCTCCGAGCAATTTGTAGAATATCCACCAGTTCCGCCACCAGGAATGTCTCCGTTTCATCGGTGCTTCCTTCGGTTCGCTCAAGTTTCGTTTCTCGAAGAAATTCATTTTCCCCTCACCCTCTAAGGTTGTTGCGACGTGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCGCCTCCGTAGAAGGTAGATTTGTGAACTATCTCAGCCCTATCTAGCACCAAATGTTTGTAGAGATGCAGAGTTTTCTTCTTGTGTATTAGATTGCCAGCATCACTTCATAATGTCTTCAGCTGTTGATTATGAAGACATGGTTTCTTCGGTTCCTCAAGTTGATTTTACCCAATTAAGTATATTTATATTACATTGAGCAGCCAATTTTTCTATAACTTGATAGTCTCCTTTTTATCATTTTGTTGTTCTAAGCACGGGGTGACACCCCTAATTGGCCAAATTCCTACCAGGTTAGTCATACAACTATTTTCTGATCCAGATGATTGCTTAATTTCAAAGTTATAATGTAAATGTGTTGAAATTAGACATAGATGATTACAATGAAATAGGAATGGTTCTTACCCGCTACAAAAATGACAATTAG

Coding sequence (CDS)

ATGGCAGCTTCTGTTGCACTCAGATCCTCCTGTCTCCGAGCAATTTGTAGAATATCCACCAGTTCCGCCACCAGGAATGTCTCCGTTTCATCGGTGCTTCCTTCGGTTCGCTCAAGTTTCGTTTCTCGAAGAAATTCATTTTCCCCTCACCCTCTAAGGTTGTTGCGACGTGAATTGAGCTCTCTTCGACCTATTCATAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCGCCTCCGTAGAAGGTAGATTTGTGAACTATCTCAGCCCTATCTAG

Protein sequence

MAASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRELSSLRPIHSAIASACLVSELPAEASASVEGRFVNYLSPI
Homology
[Close]
BLAST of Tan0008272 vs. NCBI nr
Match: XP_022937479.1 (uncharacterized protein LOC111443881 [Cucurbita moschata] >XP_023536895.1 uncharacterized protein LOC111798142 [Cucurbita pepo subsp. pepo] >KAG6585998.1 hypothetical protein SDJN03_18731, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020788.1 hypothetical protein SDJN02_17476 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-28
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRELS 60
          MAASVALRSSCLRAI RIST SA RNVSVSSVLPSVRSSFVSRR S SPH LRLLRRELS
Sbjct: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASASVE 88
          SLRPIHSAIASACLVSELPAEASASV+
Sbjct: 61 SLRPIHSAIASACLVSELPAEASASVQ 87

[Close]
BLAST of Tan0008272 vs. NCBI nr
Match: XP_022969556.1 (uncharacterized protein LOC111468540 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-27
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRELS 60
          MAASVALRSSCLRAI RIST+S+ RNVSVSS LPSVRSSFVSRR S SPH LRLLRRELS
Sbjct: 1  MAASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISPHSLRLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASASVE 88
          SLRPIHSAIASACLVSELPAEASASV+
Sbjct: 61 SLRPIHSAIASACLVSELPAEASASVQ 87

[Close]
BLAST of Tan0008272 vs. NCBI nr
Match: XP_022152888.1 (uncharacterized protein LOC111020511 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 4.7e-27
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 2  AASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSP-HPLRLLRRELS 61
          +ASVALRSSCLRAICRISTSSA RNVSVSSVLPS+RSSFV RR S SP H LRLLRRELS
Sbjct: 4  SASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELS 63

Query: 62 SLRPIHSAIASACLVSELPAEASASVE 88
          SLRP+HSAIASACLVSELPAEASASVE
Sbjct: 64 SLRPVHSAIASACLVSELPAEASASVE 90

[Close]
BLAST of Tan0008272 vs. NCBI nr
Match: XP_030957939.1 (uncharacterized protein LOC115979952 [Quercus lobata])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICR--ISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRE 60
          MAASVA RS+ +RA CR  +S SSATR  S    LP   S+FV  R+  S  PLRLLRRE
Sbjct: 1  MAASVAGRSTLVRAFCRASMSPSSATRRFS----LPPRMSNFVPHRSPTSSPPLRLLRRE 60

Query: 61 LSSLRPIHSAIASACLVSELPAEASASVE 88
          LSSL+P+HSAIASACLVS+LP+EAS S E
Sbjct: 61 LSSLQPVHSAIASACLVSKLPSEASTSTE 85

[Close]
BLAST of Tan0008272 vs. NCBI nr
Match: XP_023912928.1 (uncharacterized protein LOC112024538 [Quercus suber])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 57/89 (64.04%), Postives = 65/89 (73.03%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICR--ISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRE 60
          MAASVA RS+ +RA CR  +S SSATR  S    LP   S+FV  R+  S  PLRLLRRE
Sbjct: 1  MAASVAGRSTLVRAFCRASMSPSSATRRFS----LPPCTSNFVPHRSPTSSPPLRLLRRE 60

Query: 61 LSSLRPIHSAIASACLVSELPAEASASVE 88
          LSSL+P+HSAIASACLVS+LP EAS S E
Sbjct: 61 LSSLQPVHSAIASACLVSKLPREASTSTE 85

[Close]
BLAST of Tan0008272 vs. ExPASy TrEMBL
Match: A0A6J1FBA6 (uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC111443881 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.7e-28
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRELS 60
          MAASVALRSSCLRAI RIST SA RNVSVSSVLPSVRSSFVSRR S SPH LRLLRRELS
Sbjct: 1  MAASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISPHSLRLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASASVE 88
          SLRPIHSAIASACLVSELPAEASASV+
Sbjct: 61 SLRPIHSAIASACLVSELPAEASASVQ 87

[Close]
BLAST of Tan0008272 vs. ExPASy TrEMBL
Match: A0A6J1HY48 (uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRELS 60
          MAASVALRSSCLRAI RIST+S+ RNVSVSS LPSVRSSFVSRR S SPH LRLLRRELS
Sbjct: 1  MAASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISPHSLRLLRRELS 60

Query: 61 SLRPIHSAIASACLVSELPAEASASVE 88
          SLRPIHSAIASACLVSELPAEASASV+
Sbjct: 61 SLRPIHSAIASACLVSELPAEASASVQ 87

[Close]
BLAST of Tan0008272 vs. ExPASy TrEMBL
Match: A0A6J1DG34 (uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020511 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 2  AASVALRSSCLRAICRISTSSATRNVSVSSVLPSVRSSFVSRRNSFSP-HPLRLLRRELS 61
          +ASVALRSSCLRAICRISTSSA RNVSVSSVLPS+RSSFV RR S SP H LRLLRRELS
Sbjct: 4  SASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELS 63

Query: 62 SLRPIHSAIASACLVSELPAEASASVE 88
          SLRP+HSAIASACLVSELPAEASASVE
Sbjct: 64 SLRPVHSAIASACLVSELPAEASASVE 90

[Close]
BLAST of Tan0008272 vs. ExPASy TrEMBL
Match: A0A2N9FKA7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15372 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 8.3e-14
Identity = 61/95 (64.21%), Postives = 69/95 (72.63%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICRIST--SSATRNVSVSSVLPSVRSSFVSRRNSF-SPHPLRLLRR 60
          MAASVA RS  +RA+CR ST  SSATR  S    LPS  S+FV  R+   SP PLRLLRR
Sbjct: 1  MAASVAGRSILVRALCRASTNSSSATRRFS----LPSRSSNFVPHRSPIPSPSPLRLLRR 60

Query: 61 ELSSLRPIHSAIASACLVSELPAEASASVEEVERS 93
          ELSSL+P+HS IASACLVS+LP+EAS S E  E S
Sbjct: 61 ELSSLQPVHSVIASACLVSKLPSEASTSTEVEESS 91

[Close]
BLAST of Tan0008272 vs. ExPASy TrEMBL
Match: A0A7N2KM76 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.4e-13
Identity = 57/89 (64.04%), Postives = 66/89 (74.16%), Query Frame = 0 

Query: 1  MAASVALRSSCLRAICR--ISTSSATRNVSVSSVLPSVRSSFVSRRNSFSPHPLRLLRRE 60
          MAASVA RS+ +RA CR  +S SSATR  S    LP   S+FV  R+  S  PLRLLRRE
Sbjct: 1  MAASVAGRSTLVRAFCRASMSPSSATRRFS----LPPRMSNFVPHRSPTSSPPLRLLRRE 60

Query: 61 LSSLRPIHSAIASACLVSELPAEASASVE 88
          LSSL+P+HSAIASACLVS+LP+EAS S E
Sbjct: 61 LSSLQPVHSAIASACLVSKLPSEASTSTE 85

[Close]
BLAST of Tan0008272 vs. TAIR 10
Match: AT2G27775.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.7e-04
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0 

Query: 2  AASVALRSSC-LRAICRISTSSATRNVSVSSVLPSV-RSSFVSRRNSFSPH----PLRLL 61
          A  +A RS+  +R+I R +T+   RN+  S   PSV   +F S R + S        RLL
Sbjct: 3  AIGIASRSATFMRSINRTATA---RNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62

Query: 62 RRELSSLRPIHSAIASACLVSELPAEASA 85
          RRELS+ +P HS IA+ACLVS+LP++ ++
Sbjct: 63 RRELSTQQPFHSTIAAACLVSKLPSDVTS 88

[Close]
BLAST of Tan0008272 vs. TAIR 10
Match: AT2G27775.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.7e-04
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 0 

Query: 2   AASVALRSSC-LRAICRISTSSATRNVSVSSVLPSV-RSSFVSRRNSFSPH----PLRLL 61
           A  +A RS+  +R+I R +T+   RN+  S   PSV   +F S R + S        RLL
Sbjct: 3   AIGIASRSATFMRSINRTATA---RNLISSRARPSVPNPNFTSPRFNTSSRIEGSVPRLL 62

Query: 62  RRELSSLRPIHSAIASACLVSELPAEASASVEEVERSLLPY 97
           RRELS+ +P HS IA+ACLVS+LP++ ++      ++L+ +
Sbjct: 63  RRELSTQQPFHSTIAAACLVSKLPSDVTSPEGNNSKNLVRF 100

The following BLAST results are available for this feature:
BLAST of Tan0008272 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0008272 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937479.15.5e-2891.95uncharacterized protein LOC111443881 [Cucurbita moschata] >XP_023536895.1 unchar... [more]
XP_022969556.12.7e-2789.66uncharacterized protein LOC111468540 [Cucurbita maxima][more]
XP_022152888.14.7e-2789.66uncharacterized protein LOC111020511 [Momordica charantia][more]
XP_030957939.11.1e-1264.04uncharacterized protein LOC115979952 [Quercus lobata][more]
XP_023912928.11.1e-1264.04uncharacterized protein LOC112024538 [Quercus suber][more]
BLAST of Tan0008272 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FBA62.7e-2891.95uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC1114438... [more]
A0A6J1HY481.3e-2789.66uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540... [more]
A0A6J1DG342.3e-2789.66uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A2N9FKA78.3e-1464.21Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS15372 PE=4 SV=1[more]
A0A7N2KM765.4e-1364.04Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
BLAST of Tan0008272 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27775.17.7e-0442.70FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G27775.27.7e-0438.61FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008272.2Tan0008272.2mRNA
Tan0008272.1Tan0008272.1mRNA