Tan0008232 (gene) Snake gourd v1

Overview


Name	Tan0008232
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RING-H2 finger protein ATL46-like
Location	LG07: 3758201 .. 3759411 (-)
RNA-Seq Expression	Tan0008232
Synteny	Tan0008232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCGAAAGGAAGCAAGAAGTGATGGGAAATGAAGACAAAATTGTTTGAGCATAAAAGAATTAACGATGGAGATCGTTTTGATTCAAGTGTTGGACTGAATGAGATATTTTAATCAAACGGAAACAAATACAGAGTGTCGAAGAATTCTCAGAATCGGTGTGTTGAATCGATCATATGTTGCGGAACATGAAGAGAGAGAAAAAAGATGGAAAGGAGAAGAGCGGAGGTCTCTATTTGGGTTGTTTGAAGAAGCAAATACAGAGATTGTTGTGAACAGAGAAATTGGGAATGTGGGCTTTTTGTGAGCAAAAAAAAAAGAAGAAAATGTATAGATGAAATGAAAGAAGTTGAAGGTGGAGGGAGAAGAAAGGGGAACGAGAGAAGAAAGATGAGGGTGGTTAATCTATAAAGATTCAATTGAACTATGTTATGAGAGAGCCTTGATTGTTAGATTTTAATTTTGAAATTGAGAGACTTGATAAAAACTCTCTGAAACTTGTGGGCCAAAGTGTATTTTTTCCAAATAAAAATTACCGGTCCGCTTTATCCAGCTTTCGGCCTTTGTTAAAACTCCGAAATCCGTCAATTATCAAAAACAAAAACGATCCAAACCAGAGCAGTGGGATTTTGGGAATTCCCTTCGTCTCGATCCACAGAAATCTCATGGGGTTCCTCTATTTGGCCATTAACAGCCAAAGATGCTCTCAAATCCTCCATTTCTTCACTAGAATCCTCCTCCAATTGAAGCTTCTCCCCGCCCATTTCGGCCTCCTCAAGCCCTCGCCGGAGCAGGTCGCCGACTCTCCCTTCGATCGCCCGATCAGCTACGTCTTCCTCACCGAAGACCCCTGCCCCTCGCTCGTCACAGTTCCGGCCACCGATTTGCAGGCCAGGATCAAGAACAGCCTTCCGATCGTGGAGTATGGGGATTTTGTTGAAAAACAGGGGATGGAAATTGGAGAGAATCAGAGTTGTACGATTTGTTTGAGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTGTGTAATTGCTGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACTTGCCCTGTTTGTAGATCCATGCTTTTTCCCGCCGCTGAAGGCGATGGGTTTCGATTCTTCCGGTGACTCCTCCGCCTGTATTCTCTTTCTTTCTCTCTAATGAAATTGTATTTAAGTATTTTA

mRNA sequence

TCGAAAGGAAGCAAGAAGTGATGGGAAATGAAGACAAAATTGTTTGAGCATAAAAGAATTAACGATGGAGATCGTTTTGATTCAAGTGTTGGACTGAATGAGATATTTTAATCAAACGGAAACAAATACAGAGTGTCGAAGAATTCTCAGAATCGGTGTGTTGAATCGATCATATGTTGCGGAACATGAAGAGAGAGAAAAAAGATGGAAAGGAGAAGAGCGGAGGTCTCTATTTGGGTTGTTTGAAGAAGCAAATACAGAGATTGTTGTGAACAGAGAAATTGGGAATGTGGGCTTTTTGTGAGCAAAAAAAAAAGAAGAAAATGTATAGATGAAATGAAAGAAGTTGAAGGTGGAGGGAGAAGAAAGGGGAACGAGAGAAGAAAGATGAGGGTGGTTAATCTATAAAGATTCAATTGAACTATGTTATGAGAGAGCCTTGATTGTTAGATTTTAATTTTGAAATTGAGAGACTTGATAAAAACTCTCTGAAACTTGTGGGCCAAAGTGTATTTTTTCCAAATAAAAATTACCGGTCCGCTTTATCCAGCTTTCGGCCTTTGTTAAAACTCCGAAATCCGTCAATTATCAAAAACAAAAACGATCCAAACCAGAGCAGTGGGATTTTGGGAATTCCCTTCGTCTCGATCCACAGAAATCTCATGGGGTTCCTCTATTTGGCCATTAACAGCCAAAGATGCTCTCAAATCCTCCATTTCTTCACTAGAATCCTCCTCCAATTGAAGCTTCTCCCCGCCCATTTCGGCCTCCTCAAGCCCTCGCCGGAGCAGGTCGCCGACTCTCCCTTCGATCGCCCGATCAGCTACGTCTTCCTCACCGAAGACCCCTGCCCCTCGCTCGTCACAGTTCCGGCCACCGATTTGCAGGCCAGGATCAAGAACAGCCTTCCGATCGTGGAGTATGGGGATTTTGTTGAAAAACAGGGGATGGAAATTGGAGAGAATCAGAGTTGTACGATTTGTTTGAGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTGTGTAATTGCTGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACTTGCCCTGTTTGTAGATCCATGCTTTTTCCCGCCGCTGAAGGCGATGGGTTTCGATTCTTCCGGTGACTCCTCCGCCTGTATTCTCTTTCTTTCTCTCTAATGAAATTGTATTTAAGTATTTTA

Coding sequence (CDS)

ATGGGGTTCCTCTATTTGGCCATTAACAGCCAAAGATGCTCTCAAATCCTCCATTTCTTCACTAGAATCCTCCTCCAATTGAAGCTTCTCCCCGCCCATTTCGGCCTCCTCAAGCCCTCGCCGGAGCAGGTCGCCGACTCTCCCTTCGATCGCCCGATCAGCTACGTCTTCCTCACCGAAGACCCCTGCCCCTCGCTCGTCACAGTTCCGGCCACCGATTTGCAGGCCAGGATCAAGAACAGCCTTCCGATCGTGGAGTATGGGGATTTTGTTGAAAAACAGGGGATGGAAATTGGAGAGAATCAGAGTTGTACGATTTGTTTGAGTGAAATGGAGAGATCGGAGACGATGAGAGAGCTGTGTAATTGCTGCCATGTCTTCCATCGGGAGTGTTTGGATACGTGGATTGATGAGTTTCAGATTACTTGCCCTGTTTGTAGATCCATGCTTTTTCCCGCCGCTGAAGGCGATGGGTTTCGATTCTTCCGGTGA

Protein sequence

MGFLYLAINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLTEDPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR

Homology

[Close]

BLAST of Tan0008232 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 48/136 (35.29%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 16  ILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLTEDPCPSLVTVPAT-DL 75
           ++ FF  IL+    L A + LL+     +     +R  + VF T DP  +  +V A+  L
Sbjct: 36  VILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGL 95

Query: 76  QARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLDT 135
              +  SLP+  + D   K  +E      C +CLSE E SET R L NC H FH +C+D 
Sbjct: 96  DPNVIKSLPVFTFSDETHKDPIE------CAVCLSEFEESETGRVLPNCQHTFHVDCIDM 155

Query: 136 WIDEFQITCPVCRSML 151
           W      TCP+CRS++
Sbjct: 156 WFHSHS-TCPLCRSLV 164

[Close]

BLAST of Tan0008232 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 78  IKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLDTWID 137
           I+  LP++++ + +   G ++ EN  C +CL E E  + +R L NC H+FHR CLD W+D
Sbjct: 71  IREILPVIKFEE-LTNSGEDLPEN--CAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMD 130

Query: 138 EFQITCPVCRSMLFP 153
             Q TCP+CR+   P
Sbjct: 131 HDQKTCPLCRTPFVP 142

[Close]

BLAST of Tan0008232 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 7.7e-11
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 67  VTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHV 126
           V   A  L   +  + P   Y D V+ Q +  GE + C ICL+E E  ET+R L  C HV
Sbjct: 93  VNAAARGLDVSVVETFPTFLYSD-VKTQKLGKGELE-CAICLNEFEDDETLRLLPKCDHV 152

Query: 127 FHRECLDTWIDEFQITCPVCRSMLF-PAAEGD 158
           FH  C+D W+ E  +TCPVCR+ L    AEG+
Sbjct: 153 FHPHCIDAWL-EAHVTCPVCRANLAEQVAEGE 181

[Close]

BLAST of Tan0008232 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 74  LQARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLD 133
           L ++   SLP+  Y    +++      N+ C ICLS+ E  ET++ + +C HVFH +C+D
Sbjct: 116 LDSQAVRSLPVYRYTKAAKQR------NEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 175

Query: 134 TWIDEFQITCPVCRS 149
           TW+  + +TCP+CRS
Sbjct: 176 TWLSSY-VTCPLCRS 183

[Close]

BLAST of Tan0008232 vs. ExPASy Swiss-Prot
Match: O64763 (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 54  SYVFLTEDPCPSLVTVPATDLQARIKNSLPIVEYGDFV--EKQGMEIGE-NQSCTICLSE 113
           S +F + D       V    L AR  ++  I  +  F+  E + + IG+    C +CL E
Sbjct: 82  SSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCE 141

Query: 114 MERSETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGD 158
            E  ET+R +  CCHVFH +C+D W+ E   TCP+CR+ L    +GD
Sbjct: 142 FEDDETLRLMPPCCHVFHADCVDVWLSEHS-TCPLCRADLVLNQQGD 187

[Close]

BLAST of Tan0008232 vs. NCBI nr
Match: XP_023520502.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo] >KAG7017057.1 RING-H2 finger protein ATL2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.9 bits (686), Expect = 3.0e-68
Identity = 130/169 (76.92%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLTE 60
           MGF   AIN  RC QILHFFTRILL LKLL A FGLLKPSPE  ADSPF  P SY+FLT+
Sbjct: 1   MGFFCFAINGHRCYQILHFFTRILLHLKLLAARFGLLKPSPEHHADSPFQPPTSYLFLTD 60

Query: 61  DPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIG------ENQSCTICLSEMERS 120
           DPCPSLVTVPA DLQARIKNSLPIVE+GDF  KQG+E G      EN+ CTICLSEMERS
Sbjct: 61  DPCPSLVTVPAADLQARIKNSLPIVEFGDFAAKQGIEFGGNDGEEENRMCTICLSEMERS 120

Query: 121 ETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR 164
           E MRELCNC HVFHRECLDTWIDEFQITCPVCRS L P+ +G GFRF R
Sbjct: 121 EPMRELCNCRHVFHRECLDTWIDEFQITCPVCRSFLLPSGDGGGFRFLR 169

[Close]

BLAST of Tan0008232 vs. NCBI nr
Match: XP_022996076.1 (RING-H2 finger protein ATL46-like [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 1.6e-66
Identity = 131/170 (77.06%), Postives = 139/170 (81.76%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILH-FFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLT 60
           MGFL+ AIN+Q  SQILH  FTRILLQ KLL AHFGL+KPSPE VADSPF+RP SYV LT
Sbjct: 1   MGFLHFAINAQTSSQILHQAFTRILLQFKLLAAHFGLIKPSPELVADSPFERPTSYVLLT 60

Query: 61  EDPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEI------GENQSCTICLSEMER 120
           E   PSLVTVPA DLQ RIK SLPI+EYGDFVEKQG          EN+ CTICL EMER
Sbjct: 61  EGRYPSLVTVPAVDLQVRIKTSLPIIEYGDFVEKQGRGSPENKVDEENRKCTICLCEMER 120

Query: 121 SETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR 164
           SETMRELCNCCHVFHR+CLDTWIDEF+ITCPVCRSMLFPA EGDGF F R
Sbjct: 121 SETMRELCNCCHVFHRDCLDTWIDEFRITCPVCRSMLFPAGEGDGFPFVR 170

[Close]

BLAST of Tan0008232 vs. NCBI nr
Match: XP_038907243.1 (RING-H2 finger protein ATL2-like [Benincasa hispida])

HSP 1 Score: 261.5 bits (667), Expect = 4.7e-66
Identity = 126/169 (74.56%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLTE 60
           MGFLY +IN+  CSQILHFFT ILLQLKLL AHF LLK SPE  ADSPFDRP S+VFLTE
Sbjct: 1   MGFLYFSINAHLCSQILHFFTTILLQLKLLAAHFRLLKLSPEHNADSPFDRPTSFVFLTE 60

Query: 61  DPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQS------CTICLSEMERS 120
            PC SLVTVPA DLQ RIK SLPIV + DF+ KQGME GEN+       CT+CL EMERS
Sbjct: 61  GPCSSLVTVPAADLQGRIKKSLPIVAFRDFIAKQGMEFGENEEDEENRICTVCLCEMERS 120

Query: 121 ETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR 164
           E+MREL NCCHVFHREC D WIDEFQITCPVCRS+L PA EG GFRFF+
Sbjct: 121 ESMRELPNCCHVFHRECFDAWIDEFQITCPVCRSLLLPAGEGGGFRFFQ 169

[Close]

BLAST of Tan0008232 vs. NCBI nr
Match: XP_023533023.1 (RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 118/154 (76.62%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLTE 60
           MGFL+ AIN QR SQILH FTRILLQ KLL AHFGL+KPSPE VA+SPF+RP SYV LTE
Sbjct: 1   MGFLHFAINGQRSSQILHLFTRILLQFKLLAAHFGLIKPSPEHVAESPFERPTSYVLLTE 60

Query: 61  DPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEI------GENQSCTICLSEMERS 120
              PSLVTVPA DLQARIK SLPI+EYGDFVEKQG          EN+ CTICL EMERS
Sbjct: 61  GRYPSLVTVPAVDLQARIKTSLPIIEYGDFVEKQGRGSPEEKVDEENRKCTICLCEMERS 120

Query: 121 ETMRELCNCCHVFHRECLDTWIDEFQITCPVCRS 149
           ETMREL NCCHVFH +CLDTWIDEF+ITCPVCRS
Sbjct: 121 ETMRELSNCCHVFHPDCLDTWIDEFRITCPVCRS 154

[Close]

BLAST of Tan0008232 vs. NCBI nr
Match: XP_022159502.1 (RING-H2 finger protein ATL2-like [Momordica charantia])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQV--ADSPFDRPISYVFL 60
           MGFLY AIN  RCSQILHFFT I  +LK L  + G+LKP P+Q   AD   DRP SYVF+
Sbjct: 1   MGFLYFAINGHRCSQILHFFTGIFRRLKHLGVYLGVLKPPPQQPEDADDRVDRPTSYVFV 60

Query: 61  TEDPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQS----------CTICL 120
           TE  CPSLVTVPATDLQARIK SLPIVE+GDF  K  ++  E+            CTICL
Sbjct: 61  TEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGRCTICL 120

Query: 121 SEMERSETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR 164
           S+ME+SE MREL NCCHVFH+ECLDTWIDEFQITCP+CRSML PA EGDG R+FR
Sbjct: 121 SKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR 175

[Close]

BLAST of Tan0008232 vs. ExPASy TrEMBL
Match: A0A6J1K3P6 (RING-H2 finger protein ATL46-like OS=Cucurbita maxima OX=3661 GN=LOC111491392 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 7.8e-67
Identity = 131/170 (77.06%), Postives = 139/170 (81.76%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILH-FFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLT 60
           MGFL+ AIN+Q  SQILH  FTRILLQ KLL AHFGL+KPSPE VADSPF+RP SYV LT
Sbjct: 1   MGFLHFAINAQTSSQILHQAFTRILLQFKLLAAHFGLIKPSPELVADSPFERPTSYVLLT 60

Query: 61  EDPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEI------GENQSCTICLSEMER 120
           E   PSLVTVPA DLQ RIK SLPI+EYGDFVEKQG          EN+ CTICL EMER
Sbjct: 61  EGRYPSLVTVPAVDLQVRIKTSLPIIEYGDFVEKQGRGSPENKVDEENRKCTICLCEMER 120

Query: 121 SETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR 164
           SETMRELCNCCHVFHR+CLDTWIDEF+ITCPVCRSMLFPA EGDGF F R
Sbjct: 121 SETMRELCNCCHVFHRDCLDTWIDEFRITCPVCRSMLFPAGEGDGFPFVR 170

[Close]

BLAST of Tan0008232 vs. ExPASy TrEMBL
Match: A0A6J1E009 (RING-H2 finger protein ATL2-like OS=Momordica charantia OX=3673 GN=LOC111025900 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.9e-59
Identity = 117/175 (66.86%), Postives = 131/175 (74.86%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQV--ADSPFDRPISYVFL 60
           MGFLY AIN  RCSQILHFFT I  +LK L  + G+LKP P+Q   AD   DRP SYVF+
Sbjct: 1   MGFLYFAINGHRCSQILHFFTGIFRRLKHLGVYLGVLKPPPQQPEDADDRVDRPTSYVFV 60

Query: 61  TEDPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQS----------CTICL 120
           TE  CPSLVTVPATDLQARIK SLPIVE+GDF  K  ++  E+            CTICL
Sbjct: 61  TEGLCPSLVTVPATDLQARIKKSLPIVEFGDFAAKGELKFWEDWEEEEEEEEKGRCTICL 120

Query: 121 SEMERSETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFPAAEGDGFRFFR 164
           S+ME+SE MREL NCCHVFH+ECLDTWIDEFQITCP+CRSML PA EGDG R+FR
Sbjct: 121 SKMEKSEKMRELSNCCHVFHKECLDTWIDEFQITCPICRSMLLPAGEGDGLRYFR 175

[Close]

BLAST of Tan0008232 vs. ExPASy TrEMBL
Match: A0A2G9G363 (RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_27874 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-28
Identity = 72/160 (45.00%), Postives = 94/160 (58.75%), Query Frame = 0


Query: 1   MGFLYLAINSQRCSQI---LHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVF 60
           MGFLY AI   +   I   L+ FT           H GL KP PE+ ++S  D   +Y+ 
Sbjct: 1   MGFLYYAIKIPKAITITFFLNIFTNARFFFIGALTHLGLYKPPPEEESNSR-DNSNNYIL 60

Query: 61  LTEDPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGE-----NQSCTICLSEME 120
           + +   PSLV VP   +   IKN +PI++Y DF+ +   E GE      + C+ICL  +E
Sbjct: 61  ILDGSSPSLVPVPVQVVTTAIKNRVPIIQYHDFLLRHKEEEGEEGLCGEKVCSICLECIE 120

Query: 121 RSETMRELCNCCHVFHRECLDTWIDEFQITCPVCRSMLFP 153
               +RELCNC H+FHRECLDTWIDE Q+TCP+CRSML P
Sbjct: 121 MKHEIRELCNCSHLFHRECLDTWIDEGQVTCPLCRSMLLP 159

[Close]

BLAST of Tan0008232 vs. ExPASy TrEMBL
Match: A0A1R3K6P6 (Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_10837 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.2e-28
Identity = 66/129 (51.16%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 33  HFGLLKP----SPEQVADSPFDRPISYVFLTEDPCPSLVTVPATDLQARIKNSLPIVEYG 92
           H GLLKP    S E+   SPF+     + LT+    SLV VP   + A IK  +P+VEYG
Sbjct: 30  HLGLLKPPAAASEEEGFYSPFN---GIILLTDSRSGSLVPVPTQLVTAMIKKKVPVVEYG 89

Query: 93  DFVEKQGMEIGENQ-----SCTICLSEMERSETMRELCNCCHVFHRECLDTWIDEFQITC 152
           +F+E+ G E+ + Q      CT+CL  ME ++ MRELCNC HVFHRECLDTW+DE Q+TC
Sbjct: 90  NFMERFGDELDDEQLANCRVCTVCLESMEENDKMRELCNCSHVFHRECLDTWVDEGQVTC 149

[Close]

BLAST of Tan0008232 vs. ExPASy TrEMBL
Match: A0A438DBU0 (E3 ubiquitin-protein ligase RHA1B OS=Vitis vinifera OX=29760 GN=RHA1B_6 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.1e-27
Identity = 70/149 (46.98%), Postives = 97/149 (65.10%), Query Frame = 0


Query: 7   AINSQRCSQILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPIS-YVFLTEDPCPS 66
           +IN      +L +F ++++ + L  AH GL  P PEQ      + P S YV + +   PS
Sbjct: 4   SINVVFLLNLLGYF-KVIVMVAL--AHLGLFHP-PEQAYSE--EHPASTYVVVMDGQTPS 63

Query: 67  LVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCH 126
           LV VP   + A IK  +P+VEYG F+E+ GM   E+  C++CL  ++RS  +REL NCCH
Sbjct: 64  LVPVPV--VMAWIKKRVPVVEYGSFLERLGMHEDEDAVCSVCLDCIKRSHQIRELSNCCH 123

Query: 127 VFHRECLDTWIDEFQITCPVCRSMLFPAA 155
           VFH+ECLDTW+DE Q+TCP+CRSMLFP +
Sbjct: 124 VFHKECLDTWVDEGQVTCPLCRSMLFPGS 144

[Close]

BLAST of Tan0008232 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 48/136 (35.29%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 16  ILHFFTRILLQLKLLPAHFGLLKPSPEQVADSPFDRPISYVFLTEDPCPSLVTVPAT-DL 75
           ++ FF  IL+    L A + LL+     +     +R  + VF T DP  +  +V A+  L
Sbjct: 36  VILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGL 95

Query: 76  QARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLDT 135
              +  SLP+  + D   K  +E      C +CLSE E SET R L NC H FH +C+D 
Sbjct: 96  DPNVIKSLPVFTFSDETHKDPIE------CAVCLSEFEESETGRVLPNCQHTFHVDCIDM 155

Query: 136 WIDEFQITCPVCRSML 151
           W      TCP+CRS++
Sbjct: 156 WFHSHS-TCPLCRSLV 164

[Close]

BLAST of Tan0008232 vs. TAIR 10
Match: AT3G43430.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.8e-13
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 78  IKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLDTWI- 137
           IK SL +  + D VE+    I  N  C +CL ++E  + +REL NC HVFHR+C+D W+ 
Sbjct: 59  IKESLAVSAFRDAVERSPAAI--NDMCAVCLGDLEDEDEIRELRNCTHVFHRDCIDRWLD 118

Query: 138 -------DEFQITCPVCRSMLFPA 154
                  D+   TCP+CR+ L P+
Sbjct: 119 YECCGGDDDNHRTCPLCRTPLLPS 140

[Close]

BLAST of Tan0008232 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 78  IKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHRECLDTWID 137
           I+  LP++++ + +   G ++ EN  C +CL E E  + +R L NC H+FHR CLD W+D
Sbjct: 71  IREILPVIKFEE-LTNSGEDLPEN--CAVCLYEFEGEQEIRWLRNCRHIFHRSCLDRWMD 130

Query: 138 EFQITCPVCRSMLFP 153
             Q TCP+CR+   P
Sbjct: 131 HDQKTCPLCRTPFVP 142

[Close]

BLAST of Tan0008232 vs. TAIR 10
Match: AT5G20885.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 70  PATDLQARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMRELCNCCHVFHR 129
           P+   QA IK SL +  + D  E+    I  N +C +CL ++E  + +REL NC H+FHR
Sbjct: 51  PSISSQA-IKESLSVTTFRDAAERSPAMI--NDTCAVCLGDLEDGDEVRELRNCSHMFHR 110

Query: 130 ECLDTWID--------------EFQITCPVCRSMLFPA 154
           EC+D W+D              +   TCP+CR+ L  A
Sbjct: 111 ECIDRWLDYECCGGDENNEGEEDNHRTCPLCRTPLLAA 145

[Close]

BLAST of Tan0008232 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-12
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 61  DPCPSLVTVPATDLQARIKNSLPIVEYGDFVEKQGMEIGENQSCTICLSEMERSETMREL 120
           DP P+L    +  + A     LP+V + D      +   E++ C +CL + E  + +R L
Sbjct: 54  DPPPTLTKPDSAAILA--GEMLPVVRFSD------INRPESECCAVCLYDFENDDEIRRL 113

Query: 121 CNCCHVFHRECLDTWIDEF-QITCPVCRSMLFP 153
            NC H+FHR CLD W+  + Q+TCP+CR+   P
Sbjct: 114 TNCRHIFHRGCLDRWMMGYNQMTCPLCRTQFIP 138

The following BLAST results are available for this feature:

BLAST of Tan0008232 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T5	1.5e-14	35.29	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q9XF92	2.0e-11	41.33	Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH...	[more]
Q8RXX9	7.7e-11	42.39	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
Q9SJJ7	1.3e-10	38.67	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
O64763	1.7e-10	35.51	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV...	[more]

BLAST of Tan0008232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520502.1	3.0e-68	76.92	RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo] >KAG7017057.1 RING...	[more]
XP_022996076.1	1.6e-66	77.06	RING-H2 finger protein ATL46-like [Cucurbita maxima]	[more]
XP_038907243.1	4.7e-66	74.56	RING-H2 finger protein ATL2-like [Benincasa hispida]	[more]
XP_023533023.1	1.9e-59	76.62	RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022159502.1	1.6e-58	66.86	RING-H2 finger protein ATL2-like [Momordica charantia]	[more]

BLAST of Tan0008232 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3P6	7.8e-67	77.06	RING-H2 finger protein ATL46-like OS=Cucurbita maxima OX=3661 GN=LOC111491392 PE...	[more]
A0A6J1E009	7.9e-59	66.86	RING-H2 finger protein ATL2-like OS=Momordica charantia OX=3673 GN=LOC111025900 ...	[more]
A0A2G9G363	3.2e-28	45.00	RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=C...	[more]
A0A1R3K6P6	7.2e-28	51.16	Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_10837 PE=4 SV=1	[more]
A0A438DBU0	2.1e-27	46.98	E3 ubiquitin-protein ligase RHA1B OS=Vitis vinifera OX=29760 GN=RHA1B_6 PE=4 SV=...	[more]

BLAST of Tan0008232 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16720.1	1.1e-15	35.29	TOXICOS EN LEVADURA 2	[more]
AT3G43430.1	3.8e-13	40.48	RING/U-box superfamily protein	[more]
AT3G61460.1	1.4e-12	41.33	brassinosteroid-responsive RING-H2	[more]
AT5G20885.1	4.2e-12	36.73	RING/U-box superfamily protein	[more]
AT1G63840.1	9.3e-12	35.48	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 104..146 e-value: 2.4E-4 score: 30.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 103..147 e-value: 4.9E-11 score: 42.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 104..147 score: 12.504031
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 103..147 e-value: 9.3E-4 score: 16.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 68..152 e-value: 2.2E-16 score: 61.3
None	No IPR available	PANTHER	PTHR45969:SF36	RING-H2 FINGER PROTEIN ATL39-LIKE	coord: 60..154
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 60..154
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 95..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008232.1	Tan0008232.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding