Tan0008136 (gene) Snake gourd v1

Overview
NameTan0008136
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
LocationLG05: 60918198 .. 60918602 (+)
RNA-Seq ExpressionTan0008136
SyntenyTan0008136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTAAGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATGAACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG

mRNA sequence

ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTAAGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATGAACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG

Coding sequence (CDS)

ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTAAGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATGAACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG

Protein sequence

MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAKKC
Homology
BLAST of Tan0008136 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 141.4 bits (355), Expect = 5.8e-30
Identity = 75/132 (56.82%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 1   MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTR 60
           MP+   T+L P D EI+RT RR LR    +T  M ++     PK IR+YFQP   + Q  
Sbjct: 17  MPRDN-TNLLPLDPEIDRTYRRNLRALLNQTTEMAEE----IPKAIRDYFQPTLPASQPG 76

Query: 61  IVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISADNIRL 120
           I+N PIN NNFELK  LIQM R+ AFRG   EDP+ HL++FLEICGT KMNG+S D I+L
Sbjct: 77  IMNVPINVNNFELKPGLIQMARELAFRGRTNEDPHKHLRSFLEICGTVKMNGVSNDAIKL 136

Query: 121 RLFPFFLQGRAK 133
           RLFPF LQ RAK
Sbjct: 137 RLFPFSLQDRAK 143

BLAST of Tan0008136 vs. NCBI nr
Match: XP_017428686.1 (PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = 0

Query: 12  FDLEIERTCR-----------------RLLREGKTETHTMVDQELINNPKPIREYFQPVF 71
           FD EIERT R                 RL+ +GK ET TM DQE +   K +R+Y  P  
Sbjct: 18  FDSEIERTARRNRSSARRRKRERRQEQRLIEQGK-ETSTMADQEPVR--KTLRDYSMPNP 77

Query: 72  NSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGIS 131
           NS Q  IV  PI ANNFE+K  L+Q++++  F G  +EDPNSHL+NFL IC T K NG+S
Sbjct: 78  NSYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGTNSEDPNSHLENFLAICDTLKYNGVS 137

Query: 132 ADNIRLRLFPFFLQGRAK 133
            D IRLRLFPF L+ +AK
Sbjct: 138 DDAIRLRLFPFSLRDKAK 152

BLAST of Tan0008136 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 0

Query: 1   MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTR 60
           M + R+ D+ P D EIERT R  LR  K       D+E++  P+ +++Y +PV N   + 
Sbjct: 1   MRRARSRDIIPVDPEIERTLRS-LRRNKILAMAEEDREVL--PRTLKDYVRPVVNGNYSS 60

Query: 61  IVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISADNIRL 120
           I+  PINANNFELK  LI MV++  F G   +DPN HL  FLEIC T K+NG++ D IRL
Sbjct: 61  IMRQPINANNFELKPALISMVQQAQFSGSPLDDPNIHLAMFLEICDTVKINGVTEDTIRL 120

Query: 121 RLFPFFLQGRAK 133
           RLFPF L+ +A+
Sbjct: 121 RLFPFSLRDKAR 129

BLAST of Tan0008136 vs. NCBI nr
Match: PKA48167.1 (hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica])

HSP 1 Score: 118.2 bits (295), Expect = 5.3e-23
Identity = 65/147 (44.22%), Postives = 85/147 (57.82%), Query Frame = 0

Query: 1   MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPI 60
           M +    DL PFD EIERT  ++ R+ K +                M DQ  I    + +
Sbjct: 1   MTRSSKKDLAPFDPEIERTIAKITRQLKEQEVRGQLNKVKKDLFTKMEDQPTIQEAGRAL 60

Query: 61  REYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEIC 120
           REY  P  N   T +V   + ANNFE+K  LIQM+++   F GL ++DPN+H+ NFLEIC
Sbjct: 61  REYALPSINGANTSVVRPAVQANNFEIKPALIQMIQQSVQFYGLPSDDPNTHIANFLEIC 120

Query: 121 GTFKMNGISADNIRLRLFPFFLQGRAK 133
            TFK NG+S D IRLRLFPF L+ +AK
Sbjct: 121 DTFKHNGVSDDAIRLRLFPFSLKDKAK 147

BLAST of Tan0008136 vs. NCBI nr
Match: XP_017405956.1 (PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 67/137 (48.91%), Postives = 83/137 (60.58%), Query Frame = 0

Query: 12  FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFN 71
           FD EIERT        RR  RE +          ET TM DQE +   K +R+Y  P  N
Sbjct: 69  FDSEIERTTRSNRSSARRRKRERRKEQRRIEREEETSTMADQEPVR--KTLRDYSMPNPN 128

Query: 72  SEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISA 131
           S Q  IV  PI ANNFE+K  L+Q++++  F G  +EDPNSHL+NFL IC T K+N +S 
Sbjct: 129 SYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGANSEDPNSHLENFLAICDTLKINEVSD 188

Query: 132 DNIRLRLFPFFLQGRAK 133
           D IRLRLFPF L+ +AK
Sbjct: 189 DAIRLRLFPFSLRDKAK 203

BLAST of Tan0008136 vs. ExPASy TrEMBL
Match: A0A2H9ZY12 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 65/147 (44.22%), Postives = 85/147 (57.82%), Query Frame = 0

Query: 1   MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPI 60
           M +    DL PFD EIERT  ++ R+ K +                M DQ  I    + +
Sbjct: 1   MTRSSKKDLAPFDPEIERTIAKITRQLKEQEVRGQLNKVKKDLFTKMEDQPTIQEAGRAL 60

Query: 61  REYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEIC 120
           REY  P  N   T +V   + ANNFE+K  LIQM+++   F GL ++DPN+H+ NFLEIC
Sbjct: 61  REYALPSINGANTSVVRPAVQANNFEIKPALIQMIQQSVQFYGLPSDDPNTHIANFLEIC 120

Query: 121 GTFKMNGISADNIRLRLFPFFLQGRAK 133
            TFK NG+S D IRLRLFPF L+ +AK
Sbjct: 121 DTFKHNGVSDDAIRLRLFPFSLKDKAK 147

BLAST of Tan0008136 vs. ExPASy TrEMBL
Match: A0A438CET1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_110758 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 0

Query: 1   MPKGRATDLHPFDLEIERTCRRLLREGKT----ETHTMVDQELINNPKP---IREYFQPV 60
           M + R+ DL P DL+I +T ++L ++ K     E  T+ D+   +N  P   +++YF P 
Sbjct: 1   MRRTRSLDLVPIDLDINKTLQKLNQKHKQQVIHEVPTIGDENHGDNGAPNRALKDYFVP- 60

Query: 61  FNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEICGTFKMNG 120
            N   + I   PI AN+FE+K  +IQM++    FRGLA +DPN H+ NFLEIC TFK NG
Sbjct: 61  -NVGVSSIRRPPIQANDFEIKPTIIQMIQSSVQFRGLANDDPNLHIANFLEICDTFKHNG 120

Query: 121 ISADNIRLRLFPFFLQGRAK 133
           ++ D IRLRLFPF+L  +AK
Sbjct: 121 VTDDAIRLRLFPFYLNKKAK 138

BLAST of Tan0008136 vs. ExPASy TrEMBL
Match: A0A1U8Q202 (uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 0

Query: 11  PFDLEIERT-CRRL--LREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPIN 70
           P+D EIERT C RL   R+ + ET  M +      P+ + +Y +P        IV   I+
Sbjct: 5   PYDPEIERTLCIRLRAARQVRAETEEMAE------PRTMMDYAKPTLTGAALSIVRPAIS 64

Query: 71  ANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFF 130
           ANNFE+K  +IQM++    F G+A EDPNSH+ NFLEIC TFK NG+S D +RLRLFPF 
Sbjct: 65  ANNFEIKPAIIQMIQNTVQFCGMANEDPNSHIANFLEICDTFKHNGVSDDVVRLRLFPFS 124

Query: 131 LQGRAK 133
           L+ +AK
Sbjct: 125 LKDKAK 124

BLAST of Tan0008136 vs. ExPASy TrEMBL
Match: A0A6P6W382 (uncharacterized protein LOC113729769 OS=Coffea arabica OX=13443 GN=LOC113729769 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-21
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 0

Query: 8   DLHPFDLEIERTCRRLLR----EGKTETHTMVDQELIN------------NPKPIREYFQ 67
           ++ PFD EIER  RR  R    + + E    +++ LI             N + +R++  
Sbjct: 7   EVAPFDPEIERALRRQRRNTPHQEEQEIWQPIEEILIELPFEEEIAENEPNRRILRDFAL 66

Query: 68  PVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMN 127
           P     QT I    +NANNFE+K  LIQMV++  + G ATEDPNSHL  FLEIC T K N
Sbjct: 67  PETQGSQTSIARPMVNANNFEIKPSLIQMVQQSQYGGNATEDPNSHLSTFLEICDTIKFN 126

Query: 128 GISADNIRLRLFPFFLQGRAK 133
           G+S D I+LRLFPF L+ +AK
Sbjct: 127 GVSDDAIKLRLFPFSLKDKAK 147

BLAST of Tan0008136 vs. ExPASy TrEMBL
Match: A0A1S3UKD4 (uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766267 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 5.4e-21
Identity = 64/137 (46.72%), Postives = 80/137 (58.39%), Query Frame = 0

Query: 12  FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFN 71
           FD  IERT        RR  RE +          ET TM +++  N  K IR+Y  P  N
Sbjct: 12  FDSRIERTARSNRSSARRRKRERRKEQRRIEQEEETSTMTEEQ--NPRKTIRDYSMPDPN 71

Query: 72  SEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISA 131
             Q  IV  PI ANNFE+K  L+Q++++  F G  +EDPNSHL+NFL IC T K NG+S 
Sbjct: 72  GYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGAVSEDPNSHLENFLAICDTLKYNGVSD 131

Query: 132 DNIRLRLFPFFLQGRAK 133
           D I LRLFPF L+ +AK
Sbjct: 132 DAICLRLFPFSLRDKAK 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
WP_217833153.15.8e-3056.82retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_017428686.11.3e-2450.00PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis][more]
KAG7990634.11.3e-2447.73hypothetical protein I3843_02G035100 [Carya illinoinensis][more]
PKA48167.15.3e-2344.22hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica][more]
XP_017405956.11.5e-2248.91PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis][more]
Match NameE-valueIdentityDescription
A0A2H9ZY122.6e-2344.22Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 P... [more]
A0A438CET14.8e-2245.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_110758 PE=4 SV=1[more]
A0A1U8Q2021.4e-2148.41uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208... [more]
A0A6P6W3822.4e-2143.97uncharacterized protein LOC113729769 OS=Coffea arabica OX=13443 GN=LOC113729769 ... [more]
A0A1S3UKD45.4e-2146.72uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008136.1Tan0008136.1mRNA