Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTAAGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATGAACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG
mRNA sequence
ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTAAGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATGAACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG
Coding sequence (CDS)
ATGCCCAAGGGGAGAGCTACAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGGCTCCTAAGGGAAGGAAAAACAGAAACTCATACTATGGTTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATTCTGAGCAGACTAGAATAGTCAATGCCCCTATAAATGCTAATAATTTTGAACTTAAGACACGACTGATACAAATGGTTAGGAAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCACACTTACAGAATTTCTTAGAAATCTGTGGCACATTTAAAATGAACGGTATTTCTGCTGATAATATTCGCTTACGTCTCTTTCCTTTCTTTTTGCAGGGCAGAGCTAAAAAATGCTAG
Protein sequence
MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFFLQGRAKKC
Homology
BLAST of Tan0008136 vs. NCBI nr
Match:
WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 141.4 bits (355), Expect = 5.8e-30
Identity = 75/132 (56.82%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 1 MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTR 60
MP+ T+L P D EI+RT RR LR +T M ++ PK IR+YFQP + Q
Sbjct: 17 MPRDN-TNLLPLDPEIDRTYRRNLRALLNQTTEMAEE----IPKAIRDYFQPTLPASQPG 76
Query: 61 IVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISADNIRL 120
I+N PIN NNFELK LIQM R+ AFRG EDP+ HL++FLEICGT KMNG+S D I+L
Sbjct: 77 IMNVPINVNNFELKPGLIQMARELAFRGRTNEDPHKHLRSFLEICGTVKMNGVSNDAIKL 136
Query: 121 RLFPFFLQGRAK 133
RLFPF LQ RAK
Sbjct: 137 RLFPFSLQDRAK 143
BLAST of Tan0008136 vs. NCBI nr
Match:
XP_017428686.1 (PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis])
HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = 0
Query: 12 FDLEIERTCR-----------------RLLREGKTETHTMVDQELINNPKPIREYFQPVF 71
FD EIERT R RL+ +GK ET TM DQE + K +R+Y P
Sbjct: 18 FDSEIERTARRNRSSARRRKRERRQEQRLIEQGK-ETSTMADQEPVR--KTLRDYSMPNP 77
Query: 72 NSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGIS 131
NS Q IV PI ANNFE+K L+Q++++ F G +EDPNSHL+NFL IC T K NG+S
Sbjct: 78 NSYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGTNSEDPNSHLENFLAICDTLKYNGVS 137
Query: 132 ADNIRLRLFPFFLQGRAK 133
D IRLRLFPF L+ +AK
Sbjct: 138 DDAIRLRLFPFSLRDKAK 152
BLAST of Tan0008136 vs. NCBI nr
Match:
KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])
HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 0
Query: 1 MPKGRATDLHPFDLEIERTCRRLLREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTR 60
M + R+ D+ P D EIERT R LR K D+E++ P+ +++Y +PV N +
Sbjct: 1 MRRARSRDIIPVDPEIERTLRS-LRRNKILAMAEEDREVL--PRTLKDYVRPVVNGNYSS 60
Query: 61 IVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISADNIRL 120
I+ PINANNFELK LI MV++ F G +DPN HL FLEIC T K+NG++ D IRL
Sbjct: 61 IMRQPINANNFELKPALISMVQQAQFSGSPLDDPNIHLAMFLEICDTVKINGVTEDTIRL 120
Query: 121 RLFPFFLQGRAK 133
RLFPF L+ +A+
Sbjct: 121 RLFPFSLRDKAR 129
BLAST of Tan0008136 vs. NCBI nr
Match:
PKA48167.1 (hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica])
HSP 1 Score: 118.2 bits (295), Expect = 5.3e-23
Identity = 65/147 (44.22%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 1 MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPI 60
M + DL PFD EIERT ++ R+ K + M DQ I + +
Sbjct: 1 MTRSSKKDLAPFDPEIERTIAKITRQLKEQEVRGQLNKVKKDLFTKMEDQPTIQEAGRAL 60
Query: 61 REYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEIC 120
REY P N T +V + ANNFE+K LIQM+++ F GL ++DPN+H+ NFLEIC
Sbjct: 61 REYALPSINGANTSVVRPAVQANNFEIKPALIQMIQQSVQFYGLPSDDPNTHIANFLEIC 120
Query: 121 GTFKMNGISADNIRLRLFPFFLQGRAK 133
TFK NG+S D IRLRLFPF L+ +AK
Sbjct: 121 DTFKHNGVSDDAIRLRLFPFSLKDKAK 147
BLAST of Tan0008136 vs. NCBI nr
Match:
XP_017405956.1 (PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis])
HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 67/137 (48.91%), Postives = 83/137 (60.58%), Query Frame = 0
Query: 12 FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFN 71
FD EIERT RR RE + ET TM DQE + K +R+Y P N
Sbjct: 69 FDSEIERTTRSNRSSARRRKRERRKEQRRIEREEETSTMADQEPVR--KTLRDYSMPNPN 128
Query: 72 SEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISA 131
S Q IV PI ANNFE+K L+Q++++ F G +EDPNSHL+NFL IC T K+N +S
Sbjct: 129 SYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGANSEDPNSHLENFLAICDTLKINEVSD 188
Query: 132 DNIRLRLFPFFLQGRAK 133
D IRLRLFPF L+ +AK
Sbjct: 189 DAIRLRLFPFSLRDKAK 203
BLAST of Tan0008136 vs. ExPASy TrEMBL
Match:
A0A2H9ZY12 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 65/147 (44.22%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 1 MPKGRATDLHPFDLEIERTCRRLLREGKTET-------------HTMVDQELINNP-KPI 60
M + DL PFD EIERT ++ R+ K + M DQ I + +
Sbjct: 1 MTRSSKKDLAPFDPEIERTIAKITRQLKEQEVRGQLNKVKKDLFTKMEDQPTIQEAGRAL 60
Query: 61 REYFQPVFNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEIC 120
REY P N T +V + ANNFE+K LIQM+++ F GL ++DPN+H+ NFLEIC
Sbjct: 61 REYALPSINGANTSVVRPAVQANNFEIKPALIQMIQQSVQFYGLPSDDPNTHIANFLEIC 120
Query: 121 GTFKMNGISADNIRLRLFPFFLQGRAK 133
TFK NG+S D IRLRLFPF L+ +AK
Sbjct: 121 DTFKHNGVSDDAIRLRLFPFSLKDKAK 147
BLAST of Tan0008136 vs. ExPASy TrEMBL
Match:
A0A438CET1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_110758 PE=4 SV=1)
HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 63/140 (45.00%), Postives = 89/140 (63.57%), Query Frame = 0
Query: 1 MPKGRATDLHPFDLEIERTCRRLLREGKT----ETHTMVDQELINNPKP---IREYFQPV 60
M + R+ DL P DL+I +T ++L ++ K E T+ D+ +N P +++YF P
Sbjct: 1 MRRTRSLDLVPIDLDINKTLQKLNQKHKQQVIHEVPTIGDENHGDNGAPNRALKDYFVP- 60
Query: 61 FNSEQTRIVNAPINANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEICGTFKMNG 120
N + I PI AN+FE+K +IQM++ FRGLA +DPN H+ NFLEIC TFK NG
Sbjct: 61 -NVGVSSIRRPPIQANDFEIKPTIIQMIQSSVQFRGLANDDPNLHIANFLEICDTFKHNG 120
Query: 121 ISADNIRLRLFPFFLQGRAK 133
++ D IRLRLFPF+L +AK
Sbjct: 121 VTDDAIRLRLFPFYLNKKAK 138
BLAST of Tan0008136 vs. ExPASy TrEMBL
Match:
A0A1U8Q202 (uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 1.4e-21
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 0
Query: 11 PFDLEIERT-CRRL--LREGKTETHTMVDQELINNPKPIREYFQPVFNSEQTRIVNAPIN 70
P+D EIERT C RL R+ + ET M + P+ + +Y +P IV I+
Sbjct: 5 PYDPEIERTLCIRLRAARQVRAETEEMAE------PRTMMDYAKPTLTGAALSIVRPAIS 64
Query: 71 ANNFELKTRLIQMVRKGA-FRGLATEDPNSHLQNFLEICGTFKMNGISADNIRLRLFPFF 130
ANNFE+K +IQM++ F G+A EDPNSH+ NFLEIC TFK NG+S D +RLRLFPF
Sbjct: 65 ANNFEIKPAIIQMIQNTVQFCGMANEDPNSHIANFLEICDTFKHNGVSDDVVRLRLFPFS 124
Query: 131 LQGRAK 133
L+ +AK
Sbjct: 125 LKDKAK 124
BLAST of Tan0008136 vs. ExPASy TrEMBL
Match:
A0A6P6W382 (uncharacterized protein LOC113729769 OS=Coffea arabica OX=13443 GN=LOC113729769 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 2.4e-21
Identity = 62/141 (43.97%), Postives = 82/141 (58.16%), Query Frame = 0
Query: 8 DLHPFDLEIERTCRRLLR----EGKTETHTMVDQELIN------------NPKPIREYFQ 67
++ PFD EIER RR R + + E +++ LI N + +R++
Sbjct: 7 EVAPFDPEIERALRRQRRNTPHQEEQEIWQPIEEILIELPFEEEIAENEPNRRILRDFAL 66
Query: 68 PVFNSEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMN 127
P QT I +NANNFE+K LIQMV++ + G ATEDPNSHL FLEIC T K N
Sbjct: 67 PETQGSQTSIARPMVNANNFEIKPSLIQMVQQSQYGGNATEDPNSHLSTFLEICDTIKFN 126
Query: 128 GISADNIRLRLFPFFLQGRAK 133
G+S D I+LRLFPF L+ +AK
Sbjct: 127 GVSDDAIKLRLFPFSLKDKAK 147
BLAST of Tan0008136 vs. ExPASy TrEMBL
Match:
A0A1S3UKD4 (uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766267 PE=4 SV=1)
HSP 1 Score: 110.5 bits (275), Expect = 5.4e-21
Identity = 64/137 (46.72%), Postives = 80/137 (58.39%), Query Frame = 0
Query: 12 FDLEIERT-------CRRLLREGK---------TETHTMVDQELINNPKPIREYFQPVFN 71
FD IERT RR RE + ET TM +++ N K IR+Y P N
Sbjct: 12 FDSRIERTARSNRSSARRRKRERRKEQRRIEQEEETSTMTEEQ--NPRKTIRDYSMPDPN 71
Query: 72 SEQTRIVNAPINANNFELKTRLIQMVRKGAFRGLATEDPNSHLQNFLEICGTFKMNGISA 131
Q IV PI ANNFE+K L+Q++++ F G +EDPNSHL+NFL IC T K NG+S
Sbjct: 72 GYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGAVSEDPNSHLENFLAICDTLKYNGVSD 131
Query: 132 DNIRLRLFPFFLQGRAK 133
D I LRLFPF L+ +AK
Sbjct: 132 DAICLRLFPFSLRDKAK 146
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
WP_217833153.1 | 5.8e-30 | 56.82 | retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... | [more] |
XP_017428686.1 | 1.3e-24 | 50.00 | PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis] | [more] |
KAG7990634.1 | 1.3e-24 | 47.73 | hypothetical protein I3843_02G035100 [Carya illinoinensis] | [more] |
PKA48167.1 | 5.3e-23 | 44.22 | hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica] | [more] |
XP_017405956.1 | 1.5e-22 | 48.91 | PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis] | [more] |
Match Name | E-value | Identity | Description | |
A0A2H9ZY12 | 2.6e-23 | 44.22 | Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 P... | [more] |
A0A438CET1 | 4.8e-22 | 45.00 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_110758 PE=4 SV=1 | [more] |
A0A1U8Q202 | 1.4e-21 | 48.41 | uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208... | [more] |
A0A6P6W382 | 2.4e-21 | 43.97 | uncharacterized protein LOC113729769 OS=Coffea arabica OX=13443 GN=LOC113729769 ... | [more] |
A0A1S3UKD4 | 5.4e-21 | 46.72 | uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LO... | [more] |
Match Name | E-value | Identity | Description | |