Tan0008118 (gene) Snake gourd v1

Overview


Name	Tan0008118
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	LG01: 103074173 .. 103076159 (-)
RNA-Seq Expression	Tan0008118
Synteny	Tan0008118

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCATCTTAAACGTCGACGTTTTTGACCTTTTCGGAGCTTCCTTATCCAAATCCATGGCGTAGCTCCGTGTTGCTTTCAAACTAGAAGAGACCGAACAGAGCGCGGTGAATATCCCAGCAATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCACATTCCTCCGCTCTAAACAACAGCATCCGATCTTTCTCGCCCCTCTCTCATGCCCGCAAAATCCATCTTATTCTATCAATGGCGATATCAGTCTCTCTCTTTCTCGCTCGTCTTCCTCTCTTCTTTCTACTTCCCCCAGCCACAATCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAGGTTGATTTTTCAGTTCGCCTCAACCTCCCAAGACGAAGCAGTAGCGAGCTCTCCTTCTGACACTGAAGAGTTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATATGGTACTGTCCTGGACGTGGAGGTGTGTAAGTGTAACTCTAGTTTAGTTCTGTGAAAAAGCACATTTCTCTTGCCATTTCTGTTTGACGGTTTTGGTTTATTGCGAATTGATGATCCGTCTTTTTCTCTCAGCTTTCAATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTAACAATGGGATCACCTGAGGAGGCTCTTGCAGCACTTAATAATCTCGAATCGTATGTAAGCAGACTGATGCTTATCTTAATTATAATATTTTTCGTTTAGCTTATTGTGTTCTGTTTCGAAATTAAGGCTTTAAACAATGTTTATCCTCCATGATGGAAGAATAGTCGTATTGCTAATTTAATGCGTTTGACTTAAGGAATAGTTTGGTTTGCTTGTGTGTGATGGAAAAACTGATGAAGCAGAAAAACTAAGTATAGAATCGTATTCTACTCGTGTTCAATGTGTTGCAGTTGCTTTCACTTTTGCTACTTTTTTGAATATATTATTACAACTTACAAGGGAACCAGTTATTGACTAAAAATTTTCATCTCCTTGTTACTTTGGGTTGAAGCATTTTGATCCCTTGTTGGATTTATTTAATGAAATGGCTCATATAAATGCAGGAATTTGAGGGTCGTACTCTAAAGCTCAATTATGCTAAGCTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCGAAACCAGTTACTTTCAATTTGTTTGTGGCAAATTTGTCATTTGAAGCAAGAGCAAAGGATCTCAGGGAGTTCTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGGTAATTTCAGTATTGCTACTACCTTATTTTTTAAAAAATGAATAGCCACAGGATCATTAGATGTGAATATCAGCATTCTTATGGTGATTCATCTGTTGAAGTGCAGATTTTCATGGGGAGAGCAGTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTGAAGAGAAATCCCAGTCTGAAGTTACATCAACTGATGGGGTGGAGCTAGCAAATGCTGGTGCTGAAGTTTAAAATACGGTATCCTCTCAGTGGGGGAACGAAGGAGTTTGTCATCAACCTTTCTTTTTCTTTCTTTCTTTCTTTCTTATTCTTCTTCTTCTTCCCTCTTTTTGGAGTTAATGCTATCTAGTTTTTCCATTGAGGAACACATTACTTTCCTTGTTCTTTTACCTATAAATCTCCAACCTCTTATGTTTAAAGGATTCAAAGTTGGATTCCCCAACAGAAAGCGCACATTACTGAAAATCCATATGGACTAACGAGTGTATATTAGAGCATTTATTAGCGTCCTCATTTATTTTATCCTTTTCTCTATTGATTTAAGCCTCATTACCCTTGAGTGATTTAAGATGGTTATTTAACCCTTTTCT

mRNA sequence

CCCATCTTAAACGTCGACGTTTTTGACCTTTTCGGAGCTTCCTTATCCAAATCCATGGCGTAGCTCCGTGTTGCTTTCAAACTAGAAGAGACCGAACAGAGCGCGGTGAATATCCCAGCAATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCACATTCCTCCGCTCTAAACAACAGCATCCGATCTTTCTCGCCCCTCTCTCATGCCCGCAAAATCCATCTTATTCTATCAATGGCGATATCAGTCTCTCTCTTTCTCGCTCGTCTTCCTCTCTTCTTTCTACTTCCCCCAGCCACAATCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAGGTTGATTTTTCAGTTCGCCTCAACCTCCCAAGACGAAGCAGTAGCGAGCTCTCCTTCTGACACTGAAGAGTTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATATGGTACTGTCCTGGACGTGGAGCTTTCAATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTAACAATGGGATCACCTGAGGAGGCTCTTGCAGCACTTAATAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTAAAGCTCAATTATGCTAAGCTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCGAAACCAGTTACTTTCAATTTGTTTGTGGCAAATTTGTCATTTGAAGCAAGAGCAAAGGATCTCAGGGAGTTCTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGATTTTCATGGGGAGAGCAGTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTGAAGAGAAATCCCAGTCTGAAGTTACATCAACTGATGGGGTGGAGCTAGCAAATGCTGGTGCTGAAGTTTAAAATACGGTATCCTCTCAGTGGGGGAACGAAGGAGTTTGTCATCAACCTTTCTTTTTCTTTCTTTCTTTCTTTCTTATTCTTCTTCTTCTTCCCTCTTTTTGGAGTTAATGCTATCTAGTTTTTCCATTGAGGAACACATTACTTTCCTTGTTCTTTTACCTATAAATCTCCAACCTCTTATGTTTAAAGGATTCAAAGTTGGATTCCCCAACAGAAAGCGCACATTACTGAAAATCCATATGGACTAACGAGTGTATATTAGAGCATTTATTAGCGTCCTCATTTATTTTATCCTTTTCTCTATTGATTTAAGCCTCATTACCCTTGAGTGATTTAAGATGGTTATTTAACCCTTTTCT

Coding sequence (CDS)

ATGGCTCTGGTTCGTCTTCCTTGTTCTTCATCTTCCACATTCCTCCGCTCTAAACAACAGCATCCGATCTTTCTCGCCCCTCTCTCATGCCCGCAAAATCCATCTTATTCTATCAATGGCGATATCAGTCTCTCTCTTTCTCGCTCGTCTTCCTCTCTTCTTTCTACTTCCCCCAGCCACAATCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAGGTTGATTTTTCAGTTCGCCTCAACCTCCCAAGACGAAGCAGTAGCGAGCTCTCCTTCTGACACTGAAGAGTTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGTTCTCTGTTTGAGAAATATGGTACTGTCCTGGACGTGGAGCTTTCAATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTAACAATGGGATCACCTGAGGAGGCTCTTGCAGCACTTAATAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTAAAGCTCAATTATGCTAAGCTTAAAAAAGAGAAACCCTCCCCTCCCGTGAAACCGAAACCAGTTACTTTCAATTTGTTTGTGGCAAATTTGTCATTTGAAGCAAGAGCAAAGGATCTCAGGGAGTTCTTTGATTCAGGGAGTGGTAATGTAGTTTCTGCACAAATTATTTTTCATGAGAATCCAAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAACCAAGAAGGATGCTGAAGCAGCTATTTCCGAGTTCCAAGGGAAGATTTTCATGGGGAGAGCAGTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTGAAGAGAAATCCCAGTCTGAAGTTACATCAACTGATGGGGTGGAGCTAGCAAATGCTGGTGCTGAAGTTTAA

Protein sequence

MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSHNPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKEKPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLPEEKSQSEVTSTDGVELANAGAEV

Homology

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BLAST of Tan0008118 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.8e-19
Identity = 66/215 (30.70%), Postives = 119/215 (55.35%), Query Frame = 0


Query: 101 RLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALAALN 160
           RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVTMGS EEA  A+ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 176

Query: 161 NLESYEFEGRTLKLNYAKLKKEKPSPPVKPKPVTFN---------LFVANLSFEARAKDL 220
              S +  GRT+K+N+ ++ +   +  ++ K    N         ++  NL +   ++ L
Sbjct: 177 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 236

Query: 221 REFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRV-- 280
           ++ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G    GRA+R+  
Sbjct: 237 KDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 296

Query: 281 --ARSKQFVKLPE-EKSQSEVTSTDGVE-LANAGA 299
              R K  V  P  E+ ++E  S +  E L+N  A
Sbjct: 297 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Tan0008118 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-17
Identity = 91/294 (30.95%), Postives = 135/294 (45.92%), Query Frame = 0


Query: 10  SSSTFLRSKQQHPIFLAP---LSCPQNPSYSINGDISLSLSRSSSSLLSTSPSHNPSISI 69
           SS  FL    Q P  L P   LS    PS S+N    LSLS SS+ L S  P  + S S 
Sbjct: 7   SSLQFLFVTPQTPSSLKPNSTLSFFSLPSSSLN----LSLSSSSTGLCSIKPFES-SFST 66

Query: 70  RAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTV 129
           R   +      F     D  VA  P  +E+    +L   N+P++     +  LFE+ G V
Sbjct: 67  RVALSG-----FDQLEDDVEVAEQPRFSEDL---KLFVGNLPFSVDSAALAGLFERAGNV 126

Query: 130 LDVELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNY--AKLKKEKP 189
             VE+ +Y+K+  R+RG  FVTM + EE  AA      YE +GR +++N   A  K+E  
Sbjct: 127 EMVEV-IYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENS 186

Query: 190 S------------------------PPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSG 249
           S                           +    +  ++V NLS+      L+E F S  G
Sbjct: 187 SFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQG 246

Query: 250 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRVARSKQ 273
           NVV A++++  +  RS G+GFV + + K+   AI    G    GR++RV+ +++
Sbjct: 247 NVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEE 285

[Close]

BLAST of Tan0008118 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-17
Identity = 56/181 (30.94%), Postives = 95/181 (52.49%), Query Frame = 0


Query: 93  DTEEFSR----TRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNK--IRNRGLAFVT 152
           + EEF       +L   N+P++   E +  LFE+ G V+++   +YN+   ++RG  FVT
Sbjct: 125 EEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVEIAEVIYNRDTDQSRGFGFVT 184

Query: 153 MGSPEEALAALNNLESYEFEGRTLKLNYAKLKKEKPSPPVKPKPVTFNLFVANLSFEARA 212
           M + EEA  A+     Y+  GR L +N A  + E+P  P +    ++ ++V N+ +    
Sbjct: 185 MSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDD 244

Query: 213 KDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVR 268
             L + F S  G VVSA++++     RS G+GFV   ++ +   AI+   G+   GR +R
Sbjct: 245 ARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 303

[Close]

BLAST of Tan0008118 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.3e-16
Identity = 76/275 (27.64%), Postives = 132/275 (48.00%), Query Frame = 0


Query: 35  SYSINGDISLSLSRSSSSLLSTSPSHNPSISIRAKRTSRLIFQFASTSQDEAVASSPSDT 94
           S  +     +S    SS  LST  S +  + +  +     +   A   ++        ++
Sbjct: 49  STKLKAHFPISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVES 108

Query: 95  EEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEE 154
           E     RL   N+P++ T   +  +F + GTV +VE+ +Y+++  R+RG AFVTMGS EE
Sbjct: 109 ESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEI-VYDRVTDRSRGFAFVTMGSVEE 168

Query: 155 ALAALNNLESYEFEGRTLKLNYAKL----KKEKPSPPVKPKPVTF-----NLFVANLSFE 214
           A  A+   +  +  GRT+K+N+ ++    ++E  S  ++     F      L+VANLS+ 
Sbjct: 169 AKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWA 228

Query: 215 ARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGR 274
             ++ LR+ F    G  +SA++I+  +  RS G+GF+ F + +   +A+         GR
Sbjct: 229 LTSQGLRDAFADQPG-FMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGR 288

Query: 275 AVR--VARSKQFVKLPEEKSQSEVTSTDGVELANA 297
            +R  VA  K  V  P     S    +D  EL ++
Sbjct: 289 PLRLNVAGQKAPVSSPPVVETSPENDSDNSELLSS 321

[Close]

BLAST of Tan0008118 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-16
Identity = 88/294 (29.93%), Postives = 132/294 (44.90%), Query Frame = 0


Query: 10  SSSTFLRSKQQHPIFLAP---LSCPQNPSYSINGDISLSLSRSSSSLLSTSPSHNPSISI 69
           SS  FL    Q P  L P   LS    PS S+N    LSLS SS    ++      S S 
Sbjct: 7   SSLQFLFVTSQTPSSLKPNSTLSFFSLPSSSLN----LSLSSSSIGHSASIKPFESSFST 66

Query: 70  RAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTV 129
           R       +  F     D  VA  P  +E+    +L   N+P++     +  LFE+ G V
Sbjct: 67  RV-----ALSDFDQLEDDVEVAEQPRFSEDL---KLFVGNLPFSVDSAALAGLFERAGNV 126

Query: 130 LDVELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNY--AKLKKEKP 189
             VE+ +Y+K+  R+RG  FVTM + EE  AA      YE +GR +++N   A  K+E  
Sbjct: 127 EIVEV-IYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENS 186

Query: 190 S------------------------PPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSG 249
           S                           +    +  ++V NLS+      L+E F S  G
Sbjct: 187 SFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF-SEQG 246

Query: 250 NVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRVARSKQ 273
           NVV A++++  +  RS G+GFV + + K+   AI    G    GR++RV+ +++
Sbjct: 247 NVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEE 286

[Close]

BLAST of Tan0008118 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 523.5 bits (1347), Expect = 1.2e-144
Identity = 275/301 (91.36%), Postives = 286/301 (95.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MALVRLPCSSSS+FLRSKQQH IFLAPLSCPQNPSY INGD +LS+SRSS SLLSTS  H
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP ISIR KRTS+ +FQFASTSQDEAVASSPSD+EEFS+TRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIRGKRTSKFVFQFASTSQDEAVASSPSDSEEFSQTRLLAQNVPWSSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTL+LNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANL FEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLP-EEKSQSEVTSTDGVELANAGAE 300
           AFKTKKDAEAAISEFQGKIFMGR++RVARSKQFVKLP EEKSQSE  STD VELANA AE
Sbjct: 241 AFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFVKLPSEEKSQSEDASTDDVELANAAAE 300

[Close]

BLAST of Tan0008118 vs. NCBI nr
Match: XP_022940500.1 (RNA-binding protein CP33, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 518.5 bits (1334), Expect = 3.9e-143
Identity = 272/300 (90.67%), Postives = 283/300 (94.33%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MALVRLPCSSSSTFLRSKQQHPIFLAPLSC QNPS SINGDI+LSL RSSSSLLSTS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP I     ++ RLIF FASTSQD+AVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF
Sbjct: 61  NPFIFTEGNKSRRLIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTM SPEEALAALNNLESYEFEGRTLKLNYAKLKKE
Sbjct: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSP VKPKPVTFNLFVANLSFEARAKDLREFFDSGSGN+VSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLPEEKSQSEVTSTDGVELANAGAEV 300
           AFKTK+DAEAA+SEFQGKIFMGRA+RVARSKQFVKLPEEKSQSEVTSTDG+ L+NA AEV
Sbjct: 241 AFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVTSTDGMVLSNAAAEV 300

[Close]

BLAST of Tan0008118 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 511.1 bits (1315), Expect = 6.3e-141
Identity = 270/301 (89.70%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MA VRLPCSSSS+ LRSKQ H IFLAPLSC QNPSY INGD +LS+SRSS SLLSTS  H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP ISI AKRTS+ +FQFASTSQDEAV+SSPSD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTL+LNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANL FEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLP-EEKSQSEVTSTDGVELANAGAE 300
           AFK KKDAEAAISEFQGK FMGR++RVARSKQFVKLP EEKSQSE  STDGVELANA AE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of Tan0008118 vs. NCBI nr
Match: KAG6608265.1 (RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 509.6 bits (1311), Expect = 1.8e-140
Identity = 265/292 (90.75%), Postives = 278/292 (95.21%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MALVRLPCSSSSTFLRSKQQHPIFLAPLSC QNPS SINGDI+LSL RSSSSLLSTS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP I  +  ++ RLIF FASTSQD+AVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF
Sbjct: 61  NPFIFTKGNKSRRLIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EK+GTV+DVELSMYNKIRNRGLAFVTM SPEEALAALNNLESYEFEGRTLKLNYAKLKKE
Sbjct: 121 EKFGTVMDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSP VKPKPVTFNLFVANLSFEARAKDLREFFDSGSGN+VSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLPEEKSQSEVTSTDGVE 293
           AFKTK+DAEAA+SEFQGKIFMGRA+RVARSKQFVKLPEEKSQSEVTSTDG++
Sbjct: 241 AFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVTSTDGMD 292

[Close]

BLAST of Tan0008118 vs. NCBI nr
Match: XP_022940495.1 (RNA-binding protein CP33, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022940497.1 RNA-binding protein CP33, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022940498.1 RNA-binding protein CP33, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022940499.1 RNA-binding protein CP33, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 503.1 bits (1294), Expect = 1.7e-138
Identity = 272/329 (82.67%), Postives = 283/329 (86.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MALVRLPCSSSSTFLRSKQQHPIFLAPLSC QNPS SINGDI+LSL RSSSSLLSTS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP I     ++ RLIF FASTSQD+AVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF
Sbjct: 61  NPFIFTEGNKSRRLIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTM SPEEALAALNNLESYEFEGRTLKLNYAKLKKE
Sbjct: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSP VKPKPVTFNLFVANLSFEARAKDLREFFDSGSGN+VSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGK-----------------------------IFMGRAVRVARSK 300
           AFKTK+DAEAA+SEFQGK                             IFMGRA+RVARSK
Sbjct: 241 AFKTKRDAEAALSEFQGKVISGVTTYFLASRTVYISILMVLHLFELQIFMGRALRVARSK 300

[Close]

BLAST of Tan0008118 vs. ExPASy TrEMBL
Match: A0A6J1FQT2 (RNA-binding protein CP33, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446072 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.9e-143
Identity = 272/300 (90.67%), Postives = 283/300 (94.33%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MALVRLPCSSSSTFLRSKQQHPIFLAPLSC QNPS SINGDI+LSL RSSSSLLSTS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP I     ++ RLIF FASTSQD+AVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF
Sbjct: 61  NPFIFTEGNKSRRLIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTM SPEEALAALNNLESYEFEGRTLKLNYAKLKKE
Sbjct: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSP VKPKPVTFNLFVANLSFEARAKDLREFFDSGSGN+VSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLPEEKSQSEVTSTDGVELANAGAEV 300
           AFKTK+DAEAA+SEFQGKIFMGRA+RVARSKQFVKLPEEKSQSEVTSTDG+ L+NA AEV
Sbjct: 241 AFKTKRDAEAALSEFQGKIFMGRALRVARSKQFVKLPEEKSQSEVTSTDGMVLSNAAAEV 300

[Close]

BLAST of Tan0008118 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.0e-141
Identity = 270/301 (89.70%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MA VRLPCSSSS+ LRSKQ H IFLAPLSC QNPSY INGD +LS+SRSS SLLSTS  H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP ISI AKRTS+ +FQFASTSQDEAV+SSPSD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTL+LNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANL FEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLP-EEKSQSEVTSTDGVELANAGAE 300
           AFK KKDAEAAISEFQGK FMGR++RVARSKQFVKLP EEKSQSE  STDGVELANA AE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of Tan0008118 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 3.0e-141
Identity = 270/301 (89.70%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MA VRLPCSSSS+ LRSKQ H IFLAPLSC QNPSY INGD +LS+SRSS SLLSTS  H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP ISI AKRTS+ +FQFASTSQDEAV+SSPSD EEFSRTRLLAQNVPW+STPEDIRSLF
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTL+LNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANL FEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLP-EEKSQSEVTSTDGVELANAGAE 300
           AFK KKDAEAAISEFQGK FMGR++RVARSKQFVKLP EEKSQSE  STDGVELANA AE
Sbjct: 241 AFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAE 300

[Close]

BLAST of Tan0008118 vs. ExPASy TrEMBL
Match: A0A6J1FKE6 (RNA-binding protein CP33, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446072 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 8.3e-139
Identity = 272/329 (82.67%), Postives = 283/329 (86.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MALVRLPCSSSSTFLRSKQQHPIFLAPLSC QNPS SINGDI+LSL RSSSSLLSTS  H
Sbjct: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCSQNPSSSINGDINLSLYRSSSSLLSTSFDH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           NP I     ++ RLIF FASTSQD+AVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF
Sbjct: 61  NPFIFTEGNKSRRLIFHFASTSQDDAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EK+GTVLDVELSMYNKIRNRGLAFVTM SPEEALAALNNLESYEFEGRTLKLNYAKLKKE
Sbjct: 121 EKFGTVLDVELSMYNKIRNRGLAFVTMRSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSP VKPKPVTFNLFVANLSFEARAKDLREFFDSGSGN+VSAQIIFHENPRRSSGYGFV
Sbjct: 181 KPSPTVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNLVSAQIIFHENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGK-----------------------------IFMGRAVRVARSK 300
           AFKTK+DAEAA+SEFQGK                             IFMGRA+RVARSK
Sbjct: 241 AFKTKRDAEAALSEFQGKVISGVTTYFLASRTVYISILMVLHLFELQIFMGRALRVARSK 300

[Close]

BLAST of Tan0008118 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 1.8e-138
Identity = 267/301 (88.70%), Postives = 280/301 (93.02%), Query Frame = 0


Query: 1   MALVRLPCSSSSTFLRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPSH 60
           MA VRLPCSSSS+ LRSK  H IFLAPLSC QNPSY INGD +LS+SRSS SLLSTS SH
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  NPSISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLF 120
           +P ISIRAKRTS  +FQFASTSQDEAV SSPSDTEEFS+TRLLAQNVPW+STPEDIRSLF
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAV-SSPSDTEEFSQTRLLAQNVPWDSTPEDIRSLF 120

Query: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 180
           EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTL+LNYAKLKKE
Sbjct: 121 EKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKE 180

Query: 181 KPSPPVKPKPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFV 240
           KPSPPVKPKPVTFNLFVANL F+ARAKDL+EFFDSGSGNVVSAQIIF+ENPRRSSGYGFV
Sbjct: 181 KPSPPVKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKLP-EEKSQSEVTSTDGVELANAGAE 300
           AFKTKKDAEAAISEFQGK FMGR++RVARSKQFVKLP EEK QSE  STDGVELANA AE
Sbjct: 241 AFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 300

[Close]

BLAST of Tan0008118 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 272.7 bits (696), Expect = 3.5e-73
Identity = 163/307 (53.09%), Postives = 211/307 (68.73%), Query Frame = 0


Query: 1   MALVRLPCSSSSTF-LRSKQQHPIFLAPLSCPQNPSYSINGDISLSLSRSSSSLLSTSPS 60
           MAL+RLP  S      +S Q++P          NP+ +     SLSLS  S   L    +
Sbjct: 1   MALLRLPGISLQILGHKSNQKNP----------NPNVAFTNH-SLSLSTPSLCRLHRHAT 60

Query: 61  HNPSISIRAKRTSRLIFQFASTSQDEAVASSPSDT-------EEFSRTRLLAQNVPWNST 120
              SI  +++    L   F++T+Q+  + SS S +       EE S+TRL+AQNVPW ST
Sbjct: 61  FPDSIPAKSR---NLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTST 120

Query: 121 PEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKL 180
           PEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  AL +LES E+EGR LK+
Sbjct: 121 PEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKV 180

Query: 181 NYAKLKKEKP-SPPVKPKPV-TFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHEN 240
           +YAK KK+K  +P   P PV TFNLFVANL+FEARAK L+EFFD+ +GNVVS ++IFHEN
Sbjct: 181 DYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHEN 240

Query: 241 PRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVKL--------PEEKSQ 290
           PRRSSGYGFV+FKTKK AEAA+ EFQGK F+GR +R+A+SKQFVKL        PEE+++
Sbjct: 241 PRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAE 293

[Close]

BLAST of Tan0008118 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.9 bits (668), Expect = 6.2e-70
Identity = 133/202 (65.84%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 98  SRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAAL 157
           S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA  AL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 158 NNLESYEFEGRTLKLNYAKLKKEKP-SPPVKPKPV-TFNLFVANLSFEARAKDLREFFDS 217
            +LES E+EGR LK++YAK KK+K  +P   P PV TFNLFVANL+FEARAK L+EFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 218 GSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRVARSKQFVK 277
            +GNVVS ++IFHENPRRSSGYGFV+FKTKK AEAA+ EFQGK F+GR +R+A+SKQFVK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 278 L--------PEEKSQSEVTSTD 290
           L        PEE+++ E + ++
Sbjct: 212 LQAKEGLQPPEEEAEEEPSQSE 233

[Close]

BLAST of Tan0008118 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-31
Identity = 96/275 (34.91%), Postives = 149/275 (54.18%), Query Frame = 0


Query: 47  SRSSSSLLSTS-----PSH-NPSISIR--AKRTSRLIFQFASTSQDEAVASSPSDTEEFS 106
           S+ SSSL  T+     PS+ +P  S+R  +  + RL+    S ++ E  A   +  EE +
Sbjct: 26  SKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRRLVSVLCSVAEKETSADEETSQEEKT 85

Query: 107 --------RTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSP 166
                   + +L   N+PW+ +  DI  LF + GTV +VE+      +NRG AFVTM S 
Sbjct: 86  EETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASG 145

Query: 167 EEALAALNNLESYEFEGRTLKLNYA-KLKKEKPS-----PPVKPKPVTFNLFVANLSFEA 226
           EEA AA++  ++++  GR + +++A + KK  P      P   P      L+V+NL+++A
Sbjct: 146 EEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKA 205

Query: 227 RAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRA 286
           R+  LRE F +   N VSA+++F +   RSSGYGFV+F T+++AE AI++  GK  MGR 
Sbjct: 206 RSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRP 265

Query: 287 VRVARSKQFVKLPEEKSQSEVTSTDGVELANAGAE 300
           + +  S         +S SE    D VE  NA  +
Sbjct: 266 ITLKFSL--------RSASESEDGDSVEANNASED 292

[Close]

BLAST of Tan0008118 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-20
Identity = 66/215 (30.70%), Postives = 119/215 (55.35%), Query Frame = 0


Query: 101 RLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALAALN 160
           RL   N+P+  T  ++  +F + GTV+DV++ +Y+K+  R+RG  FVTMGS EEA  A+ 
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQI-VYDKVTDRSRGFGFVTMGSIEEAKEAMQ 176

Query: 161 NLESYEFEGRTLKLNYAKLKKEKPSPPVKPKPVTFN---------LFVANLSFEARAKDL 220
              S +  GRT+K+N+ ++ +   +  ++ K    N         ++  NL +   ++ L
Sbjct: 177 MFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 236

Query: 221 REFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKTKKDAEAAISEFQGKIFMGRAVRV-- 280
           ++ F    G V+ A++I+  N  RS G+GF++F++ ++ ++A++   G    GRA+R+  
Sbjct: 237 KDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 296

Query: 281 --ARSKQFVKLPE-EKSQSEVTSTDGVE-LANAGA 299
              R K  V  P  E+ ++E  S +  E L+N  A
Sbjct: 297 ASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Tan0008118 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-19
Identity = 70/217 (32.26%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 63  SISIRAKRTSRLIFQFASTSQDEAVASSPSDTEEFSRTRLLAQNVPWNSTPEDIRSLFEK 122
           S S R +  S  I       + +  AS+  D      T+L   N+P+N     +  + + 
Sbjct: 48  SCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQD 107

Query: 123 YGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALAALNNLESYEFEGRTLKLNYAKLKKE 182
           +     VE+ +YN+   ++RG AFVTM + E+    ++NL+  E+ GR LK+N+A    +
Sbjct: 108 FANPELVEV-LYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA----D 167

Query: 183 KPSPPVKP--KPVTFNLFVANLSFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYG 242
           KP P  +P        LFV NLS+   ++ L   F    G+VV A+++F  +  RS GYG
Sbjct: 168 KPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE-CGDVVGARVVFDGDTGRSRGYG 227

Query: 243 FVAFKTKKDAEAAISEFQGKIFMGRAVRV--ARSKQF 274
           FV + +K + E A+    G    GRA+RV  A+ K+F
Sbjct: 228 FVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of Tan0008118 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	2.8e-19	30.70	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08937	2.0e-17	30.95	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P19683	3.5e-17	30.94	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19684	1.3e-16	27.64	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P49314	2.9e-16	29.93	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Tan0008118 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897887.1	1.2e-144	91.36	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_022940500.1	3.9e-143	90.67	RNA-binding protein CP33, chloroplastic-like isoform X2 [Cucurbita moschata]	[more]
XP_008466190.1	6.3e-141	89.70	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
KAG6608265.1	1.8e-140	90.75	RNA-binding protein CP33, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_022940495.1	1.7e-138	82.67	RNA-binding protein CP33, chloroplastic-like isoform X1 [Cucurbita moschata] >XP...	[more]

BLAST of Tan0008118 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQT2	1.9e-143	90.67	RNA-binding protein CP33, chloroplastic-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A5A7TBD1	3.0e-141	89.70	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	3.0e-141	89.70	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A6J1FKE6	8.3e-139	82.67	RNA-binding protein CP33, chloroplastic-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A0A0LEN0	1.8e-138	88.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]

BLAST of Tan0008118 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	3.5e-73	53.09	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	6.2e-70	65.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	3.3e-31	34.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.0e-20	30.70	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	1.7e-19	32.26	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 194..268 e-value: 4.4E-21 score: 86.0 coord: 101..173 e-value: 2.0E-16 score: 70.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 195..265 e-value: 1.3E-16 score: 60.2 coord: 105..171 e-value: 7.6E-14 score: 51.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..272 score: 17.455235
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 100..177 score: 16.687742
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 181..282 e-value: 2.5E-22 score: 81.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 69..180 e-value: 2.6E-21 score: 78.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 279..300
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 1..288
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 1..288
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 182..275
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 87..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008118.1	Tan0008118.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding