Tan0008113 (gene) Snake gourd v1

Overview
NameTan0008113
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG04: 63430713 .. 63431394 (+)
RNA-Seq ExpressionTan0008113
SyntenyTan0008113
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCAATAAACTGGACTTAGATCCACAAGTTCATTATCCTTTCTTCCTTTCATTGTTTCATCCCAGCTCTCTCCGCTTCCGATCCAAATTCCATGGTACATTCTTCAAACACCGCGGACGCAACGGCGGCCATGGTGGTCCTTATTTTGATGCTGAGCGCAAGCAACTGCAAGGCTGCTTCTCTAGTACTTCCTCCCAATTTCGTCAACGCGACCGTCGCCCCTGCAGCACCGATGTGGTGCCATGGCCCCCTCGATGAATGCCTGGCCGTTGAAGAAAATTTCTTTAGTTTTAACATTGGTGTAAGGACTGGAAAGAACGATAGTTCAATATGTGGTCGGTTCTATATGGGAAAGTATATTGGCTGTATCGACAAGGATCAAGGATCCAACAAGCCAAAAATTTGTCGTGACAACTATGACCGGAGCTGCACGTAAGAACAGAAGGAAAAGTCAACATGTCGTCCGCCAATTTCTCCGGCAGCCTATCAGCTCGTAGCTCACTCTAGTGAGTCTTGTTAGGTTATCTCGTTTGAATTTTATTTGATGAACTTGGTAAGGCTTCTGCTTACTACACATGCTATTTTATTATTTATTTTATTTTTTAGGTCGTTACAATTTAAAAATGTCTATTTTTGTTATAAATTCGCTACTTTGGAATATATATAATGTGGTTTAATTA

mRNA sequence

ATTTCAATAAACTGGACTTAGATCCACAAGTTCATTATCCTTTCTTCCTTTCATTGTTTCATCCCAGCTCTCTCCGCTTCCGATCCAAATTCCATGGTACATTCTTCAAACACCGCGGACGCAACGGCGGCCATGGTGGTCCTTATTTTGATGCTGAGCGCAAGCAACTGCAAGGCTGCTTCTCTAGTACTTCCTCCCAATTTCGTCAACGCGACCGTCGCCCCTGCAGCACCGATGTGGTGCCATGGCCCCCTCGATGAATGCCTGGCCGTTGAAGAAAATTTCTTTAGTTTTAACATTGGTGTAAGGACTGGAAAGAACGATAGTTCAATATGTGGTCGGTTCTATATGGGAAAGTATATTGGCTGTATCGACAAGGATCAAGGATCCAACAAGCCAAAAATTTGTCGTGACAACTATGACCGGAGCTGCACGTAAGAACAGAAGGAAAAGTCAACATGTCGTCCGCCAATTTCTCCGGCAGCCTATCAGCTCGTAGCTCACTCTAGTGAGTCTTGTTAGGTTATCTCGTTTGAATTTTATTTGATGAACTTGGTAAGGCTTCTGCTTACTACACATGCTATTTTATTATTTATTTTATTTTTTAGGTCGTTACAATTTAAAAATGTCTATTTTTGTTATAAATTCGCTACTTTGGAATATATATAATGTGGTTTAATTA

Coding sequence (CDS)

ATGGTACATTCTTCAAACACCGCGGACGCAACGGCGGCCATGGTGGTCCTTATTTTGATGCTGAGCGCAAGCAACTGCAAGGCTGCTTCTCTAGTACTTCCTCCCAATTTCGTCAACGCGACCGTCGCCCCTGCAGCACCGATGTGGTGCCATGGCCCCCTCGATGAATGCCTGGCCGTTGAAGAAAATTTCTTTAGTTTTAACATTGGTGTAAGGACTGGAAAGAACGATAGTTCAATATGTGGTCGGTTCTATATGGGAAAGTATATTGGCTGTATCGACAAGGATCAAGGATCCAACAAGCCAAAAATTTGTCGTGACAACTATGACCGGAGCTGCACGTAA

Protein sequence

MVHSSNTADATAAMVVLILMLSASNCKAASLVLPPNFVNATVAPAAPMWCHGPLDECLAVEENFFSFNIGVRTGKNDSSICGRFYMGKYIGCIDKDQGSNKPKICRDNYDRSCT
Homology
[Close]
BLAST of Tan0008113 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_015152 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 8   ADATAAMVVLILMLSASN-CKAASLVLPPNFVNATV-APAAPMWCHGPLDECLAVEENFF 67
           A +T AM +LIL L+ S+ C AAS VLP NF N T+ A  + ++C+G L +C  VEEN  
Sbjct: 6   APSTTAMTILILTLTISSYCNAAS-VLPSNFANETITAMTSTIFCNGLLQQCFNVEENGI 65

Query: 68  SFNIGVRTGKNDSSICGRFYMGKYIGCIDKDQGSNKPKICRDNYDRSCT 115
            +    RTG   SS+CGRFY G YI CI   QGS KPK CR  YDR+C+
Sbjct: 66  HYYSTPRTGSRASSVCGRFYNGSYIKCI-TTQGSPKPKDCRSAYDRTCS 112

[Close]
BLAST of Tan0008113 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-05
Identity = 48/132 (36.36%), Postives = 63/132 (47.73%), Query Frame = 0 

Query: 1   MVHSSNT-----ADATAAMVVLILMLSASNCKAASLVLPPNFVNATVAPAAPMWCHGPLD 60
           M HSSN+     A A AAM V ILMLS S+C  AS   P ++ N TVA AA MWC G ++
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVAS-PTPSSYGNITVAAAASMWCDGRVE 60

Query: 61  ECLAVEEN--------------FFSFNIGVRTGKNDSSICGRFYMGKYIGCIDKDQGSNK 114
           EC+  E++              F SF     T   +  +C R   G Y  C +  + + K
Sbjct: 61  ECVTREDDGESAFPSLLASTPKFISF----PTRNRNKPVCER--PGDYKSCFNARRTNTK 120

[Close]
BLAST of Tan0008113 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-04
Identity = 43/125 (34.40%), Postives = 62/125 (49.60%), Query Frame = 0 

Query: 1   MVHSSNTAD--ATAAMVVLILMLSASNCKAASLVLPPNFVNATVAPAAPMWCHGPLDECL 60
           M HSSN+    A AAM V IL+LS S+C  AS   P ++ N TVA AA MWC G ++EC+
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVAS-PTPSSYGNNTVAAAASMWCDGRVEECV 60

Query: 61  AVEENFFSFNIGVRTG----------KNDSSICGRFYMGKYIGCIDKDQGSNKPKICRDN 114
             E +  S    ++T            ++ ++C R    +Y  C +  + +  P  C   
Sbjct: 61  TREGDSASAFPSLQTSTRKYISPSSVNSNKAVCER--PDEYRSCFNPRRSNPNPNNC-GR 120

[Close]
BLAST of Tan0008113 vs. ExPASy TrEMBL
Match: A0A0A0KY59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.8e-17
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 8   ADATAAMVVLILMLSASN-CKAASLVLPPNFVNATV-APAAPMWCHGPLDECLAVEENFF 67
           A +T AM +LIL L+ S+ C AAS VLP NF N T+ A  + ++C+G L +C  VEEN  
Sbjct: 6   APSTTAMTILILTLTISSYCNAAS-VLPSNFANETITAMTSTIFCNGLLQQCFNVEENGI 65

Query: 68  SFNIGVRTGKNDSSICGRFYMGKYIGCIDKDQGSNKPKICRDNYDRSCT 115
            +    RTG   SS+CGRFY G YI CI   QGS KPK CR  YDR+C+
Sbjct: 66  HYYSTPRTGSRASSVCGRFYNGSYIKCI-TTQGSPKPKDCRSAYDRTCS 112

The following BLAST results are available for this feature:
BLAST of Tan0008113 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0008113 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53789.11.4e-1651.38hypothetical protein Csa_015152 [Cucumis sativus][more]
KAG6607070.15.5e-0536.36hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.13.6e-0434.40hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0008113 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY596.8e-1751.38Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
BLAST of Tan0008113 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0008113.1Tan0008113.1mRNA