Tan0008105 (gene) Snake gourd v1

Overview


Name	Tan0008105
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG03: 65084497 .. 65085000 (-)
RNA-Seq Expression	Tan0008105
Synteny	Tan0008105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGCTCCAAAGACATGGTTCGATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTCAATTCAGTCGCCGTCGGAGCCGCTCCGCCGCCGATGATCGGAGCCGAACCGCCTTCCGGAAGGAAGCTCGGGAAGCACCGGAGTACGGCGGTTGTTTCTTCAAGCCCGACTGAAGCGCCGCGTAGCGAAATGAAAGTCCAGGCGGACTCGGCGGCGAGCGGCGGAGAGAGTGGGAATGAGATTCAATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGCGGCGGTGTCATATTGGGCGGACTCGCCACCACTTTTCTGGTGGCGATTATTTGTTACATTAGAGCTACGAGGCGACAGAACTCAGAGTGAAGTGAGCTTTCGAAACGACATGTCGTCCGTGTGGTTTGTAAGCTTGTAATTGTAATTTTTTCTTAATGGAGGTTGTAATTGTAATTAATCATAAGTATAAAGGTGAAAGGATTAAAAA

mRNA sequence

GCAGCTCCAAAGACATGGTTCGATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTCAATTCAGTCGCCGTCGGAGCCGCTCCGCCGCCGATGATCGGAGCCGAACCGCCTTCCGGAAGGAAGCTCGGGAAGCACCGGAGTACGGCGGTTGTTTCTTCAAGCCCGACTGAAGCGCCGCGTAGCGAAATGAAAGTCCAGGCGGACTCGGCGGCGAGCGGCGGAGAGAGTGGGAATGAGATTCAATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGCGGCGGTGTCATATTGGGCGGACTCGCCACCACTTTTCTGGTGGCGATTATTTGTTACATTAGAGCTACGAGGCGACAGAACTCAGAGTGAAGTGAGCTTTCGAAACGACATGTCGTCCGTGTGGTTTGTAAGCTTGTAATTGTAATTTTTTCTTAATGGAGGTTGTAATTGTAATTAATCATAAGTATAAAGGTGAAAGGATTAAAAA

Coding sequence (CDS)

ATGGTTCGATTTCTATTCCTTCTCTTCATCTTCGCCAATGCTCTTCTCAATTCAGTCGCCGTCGGAGCCGCTCCGCCGCCGATGATCGGAGCCGAACCGCCTTCCGGAAGGAAGCTCGGGAAGCACCGGAGTACGGCGGTTGTTTCTTCAAGCCCGACTGAAGCGCCGCGTAGCGAAATGAAAGTCCAGGCGGACTCGGCGGCGAGCGGCGGAGAGAGTGGGAATGAGATTCAATTGGAGAATCGTGAGCATCATAAGTCGAGAGATATGTCTATTGCCGGCGGCGGTGTCATATTGGGCGGACTCGCCACCACTTTTCTGGTGGCGATTATTTGTTACATTAGAGCTACGAGGCGACAGAACTCAGAGTGA

Protein sequence

MVRFLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQNSE

Homology

[Close]

BLAST of Tan0008105 vs. NCBI nr
Match: XP_008448528.1 (PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 uncharacterized protein E6C27_scaffold30G001250 [Cucumis melo var. makuwa] >TYK23611.1 uncharacterized protein E5676_scaffold500G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-40
Identity = 95/120 (79.17%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 4   FLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQ 63
           FLFLLFIFANA  +S+A  AAPPP   AE PS RKLGKH+STA+  SSP EAPRSEMKVQ
Sbjct: 7   FLFLLFIFANAFFSSLAAAAAPPP-TSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQ 66

Query: 64  ADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQNSE 123
             SAASGGESGN +QL N +HHKSRD SIAGGGVILGGLATTFLVAIICYIRATRRQ SE
Sbjct: 67  GTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 125

[Close]

BLAST of Tan0008105 vs. NCBI nr
Match: KGN54308.1 (hypothetical protein Csa_017945 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 4   FLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQ 63
           FLFLLFIFANAL +S+A  AAPPP   AE PS RKLGKH+STA+  SSPTEAPRS MKVQ
Sbjct: 5   FLFLLFIFANALFSSLAAAAAPPP-TSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMKVQ 64

Query: 64  ADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQNSE 123
             S ASGGESGN ++L N +HHKSRD SIAGGGVILGGLATTFLVA+ICYIRATRRQ SE
Sbjct: 65  GTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSE 123

[Close]

BLAST of Tan0008105 vs. NCBI nr
Match: KAG6603622.1 (hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033809.1 hypothetical protein SDJN02_03534, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.8 bits (434), Expect = 3.7e-39
Identity = 96/121 (79.34%), Postives = 103/121 (85.12%), Query Frame = 0


Query: 1   MVRFLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEM 60
           M  FLFLLFIFANALL SVAVGAAPPP   AEPPSGRKLGKH STAVV SSP+EAPRSE 
Sbjct: 23  MAPFLFLLFIFANALLGSVAVGAAPPP-TAAEPPSGRKLGKHHSTAVVFSSPSEAPRSEK 82

Query: 61  KVQADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQ 120
           KV   S A+ G +GNEI+LEN EHHKS D S+AGGGVILGGLATTFLVAI+CYIRATRRQ
Sbjct: 83  KV---STANDGGTGNEIELENHEHHKSIDKSVAGGGVILGGLATTFLVAIVCYIRATRRQ 139

Query: 121 N 122
           +
Sbjct: 143 S 139

[Close]

BLAST of Tan0008105 vs. NCBI nr
Match: XP_022151558.1 (uncharacterized protein LOC111019472 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 1.3e-31
Identity = 93/131 (70.99%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MVRFLFLLFIFANALLNSVAV-----GAAPPPM-IGAEPPSGRKLGKHRSTAVVS--SSP 60
           M RFLF+LFIFANA LNSV V     GAAP P+  GAE PS RKLGKHRS A VS  SSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  TEAPRSEMKVQADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIIC 120
           +EAPRSEMKVQA SAA+   +G + Q  N   HK+ D SIAGGGVILGGLATTFLVAIIC
Sbjct: 61  SEAPRSEMKVQATSAAA--TNGGDHQHHN---HKASDKSIAGGGVILGGLATTFLVAIIC 120

Query: 121 YIRATRRQNSE 124
           YIRATRR NSE
Sbjct: 121 YIRATRRSNSE 126

[Close]

BLAST of Tan0008105 vs. NCBI nr
Match: KAG6595353.1 (hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027361.1 hypothetical protein SDJN02_11373, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.6 bits (353), Expect = 9.2e-30
Identity = 83/123 (67.48%), Postives = 89/123 (72.36%), Query Frame = 0


Query: 1   MVRFLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEM 60
           M  FLFLLFIFA+ALL+S AV         AEPPS RKLG H S A VSSSP+EAP+SE+
Sbjct: 1   MAPFLFLLFIFASALLDSAAV--------AAEPPSARKLGNHWSAAAVSSSPSEAPQSEI 60

Query: 61  KVQADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQ 120
           KV                LENREHHKSRDMSIAGGGVILGGLATTF VAIICYIRAT+RQ
Sbjct: 61  KV----------------LENREHHKSRDMSIAGGGVILGGLATTFFVAIICYIRATKRQ 99

Query: 121 NSE 124
           NSE
Sbjct: 121 NSE 99

[Close]

BLAST of Tan0008105 vs. ExPASy TrEMBL
Match: A0A5A7TSM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001230 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 95/120 (79.17%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 4   FLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQ 63
           FLFLLFIFANA  +S+A  AAPPP   AE PS RKLGKH+STA+  SSP EAPRSEMKVQ
Sbjct: 7   FLFLLFIFANAFFSSLAAAAAPPP-TSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQ 66

Query: 64  ADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQNSE 123
             SAASGGESGN +QL N +HHKSRD SIAGGGVILGGLATTFLVAIICYIRATRRQ SE
Sbjct: 67  GTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 125

[Close]

BLAST of Tan0008105 vs. ExPASy TrEMBL
Match: A0A1S3BJV8 (uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 95/120 (79.17%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 4   FLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQ 63
           FLFLLFIFANA  +S+A  AAPPP   AE PS RKLGKH+STA+  SSP EAPRSEMKVQ
Sbjct: 7   FLFLLFIFANAFFSSLAAAAAPPP-TSAESPSLRKLGKHQSTAIAFSSPIEAPRSEMKVQ 66

Query: 64  ADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQNSE 123
             SAASGGESGN +QL N +HHKSRD SIAGGGVILGGLATTFLVAIICYIRATRRQ SE
Sbjct: 67  GTSAASGGESGNAVQLGNHDHHKSRDKSIAGGGVILGGLATTFLVAIICYIRATRRQKSE 125

[Close]

BLAST of Tan0008105 vs. ExPASy TrEMBL
Match: A0A0A0KXQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 93/120 (77.50%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 4   FLFLLFIFANALLNSVAVGAAPPPMIGAEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQ 63
           FLFLLFIFANAL +S+A  AAPPP   AE PS RKLGKH+STA+  SSPTEAPRS MKVQ
Sbjct: 5   FLFLLFIFANALFSSLAAAAAPPP-TSAESPSVRKLGKHQSTAIAFSSPTEAPRSVMKVQ 64

Query: 64  ADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIICYIRATRRQNSE 123
             S ASGGESGN ++L N +HHKSRD SIAGGGVILGGLATTFLVA+ICYIRATRRQ SE
Sbjct: 65  GTSGASGGESGNAVELGNHDHHKSRDKSIAGGGVILGGLATTFLVAVICYIRATRRQKSE 123

[Close]

BLAST of Tan0008105 vs. ExPASy TrEMBL
Match: A0A6J1DCH7 (uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019472 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 6.2e-32
Identity = 93/131 (70.99%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MVRFLFLLFIFANALLNSVAV-----GAAPPPM-IGAEPPSGRKLGKHRSTAVVS--SSP 60
           M RFLF+LFIFANA LNSV V     GAAP P+  GAE PS RKLGKHRS A VS  SSP
Sbjct: 1   MARFLFILFIFANAFLNSVVVVGAEFGAAPSPISTGAETPSARKLGKHRSAAAVSSGSSP 60

Query: 61  TEAPRSEMKVQADSAASGGESGNEIQLENREHHKSRDMSIAGGGVILGGLATTFLVAIIC 120
           +EAPRSEMKVQA SAA+   +G + Q  N   HK+ D SIAGGGVILGGLATTFLVAIIC
Sbjct: 61  SEAPRSEMKVQATSAAA--TNGGDHQHHN---HKASDKSIAGGGVILGGLATTFLVAIIC 120

Query: 121 YIRATRRQNSE 124
           YIRATRR NSE
Sbjct: 121 YIRATRRSNSE 126

[Close]

BLAST of Tan0008105 vs. ExPASy TrEMBL
Match: A0A5D2BCQ1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G182300v1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14
Identity = 63/147 (42.86%), Postives = 77/147 (52.38%), Query Frame = 0


Query: 1   MVRFLFLLFIFANALLNSVAVGAAPPPMIG----AEPPSGRKLGKHRSTAVV----SSSP 60
           M + L L     NA +   A G AP P  G    AE P+ RKLGKH+         +SSP
Sbjct: 1   MAQLLLLCLFLINAFVAMAASGNAPAPAPGEPYKAEAPTIRKLGKHQLLKTFDNAPASSP 60

Query: 61  TEAPRSEMKV-------QADSAASGGE---------SGNEIQLENREHHKSRDMSIAGGG 120
           ++AP ++  +        AD  A+  E          G  I L+N  HH S D S+AGGG
Sbjct: 61  SQAPHTKKNMHPTVGSPSADHTAAITEPNKEENVSVDGEAIHLQNHHHHHSMDKSVAGGG 120

Query: 121 VILGGLATTFLVAIICYIRATRRQNSE 124
           VILGGLATTFLVA+ CYIRAT R   E
Sbjct: 121 VILGGLATTFLVAVFCYIRATGRHKPE 147

[Close]

BLAST of Tan0008105 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 41/89 (46.07%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 31  AEPPSGRKLGKHRSTAVVSSSPTEAPRSEMKVQADSAASGGESGNEIQLENREHHKSRDM 90
           AEPP+ RKLG+H           E P  E       A +   S  E  +    HH + + 
Sbjct: 25  AEPPATRKLGRH-----------EWPGEE-------AEAPEVSHLEETVRRGHHHSTVER 84

Query: 91  SIAGGGVILGGLATTFLVAIICYIRATRR 120
           S+AGGGVILGGLATTFLV + CYIRATR+
Sbjct: 85  SVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of Tan0008105 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0008105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448528.1	7.5e-40	79.17	PREDICTED: uncharacterized protein LOC103490675 [Cucumis melo] >KAA0045126.1 unc...	[more]
KGN54308.1	2.2e-39	77.50	hypothetical protein Csa_017945 [Cucumis sativus]	[more]
KAG6603622.1	3.7e-39	79.34	hypothetical protein SDJN03_04231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022151558.1	1.3e-31	70.99	uncharacterized protein LOC111019472 [Momordica charantia]	[more]
KAG6595353.1	9.2e-30	67.48	hypothetical protein SDJN03_11906, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0008105 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TSM2	3.6e-40	79.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJV8	3.6e-40	79.17	uncharacterized protein LOC103490675 OS=Cucumis melo OX=3656 GN=LOC103490675 PE=...	[more]
A0A0A0KXQ0	1.1e-39	77.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303070 PE=4 SV=1	[more]
A0A6J1DCH7	6.2e-32	70.99	uncharacterized protein LOC111019472 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D2BCQ1	2.6e-14	42.86	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G182300v1 PE=...	[more]

BLAST of Tan0008105 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	1.0e-10	46.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..87
None	No IPR available	PANTHER	PTHR34558:SF9	F3L24.15 PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008105.1	Tan0008105.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane