Tan0008008 (gene) Snake gourd v1

Overview


Name	Tan0008008
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	LG08: 72290230 .. 72290804 (-)
RNA-Seq Expression	Tan0008008
Synteny	Tan0008008

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCTGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTATGTCCGCGCCAATAACAGCAGGGCTCGTACCCCTTTTACGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTACGCTGTCTATCCTCTTCAAATCTCTGTTTCACCTGTTGACAAATTCGCTTAGAGAAATTCAGAATAATAAATTCATGTGGGGCTTGCGAGTTACCTTTTCTTTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCAAGAGCCTGCATGATAGGCCTCATTGGGATTTTCGTAGTAGAGCTGGTGAGTTTTTCGTTTTTTAAAGAATGGGAAGAGTTTCTTTCTTTTACCTTCCATATTCAAGGTCGTGGTTTTTATTTAGTTTTGTCTGATTTTTCAGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA

mRNA sequence

ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCTGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTATGTCCGCGCCAATAACAGCAGGGCTCGTACCCCTTTTACGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCAAGAGCCTGCATGATAGGCCTCATTGGGATTTTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA

Coding sequence (CDS)

ATGGCGTCCTCCTCTACGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACCTGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTATGTCCGCGCCAATAACAGCAGGGCTCGTACCCCTTTTACGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCAAGAGCCTGCATGATAGGCCTCATTGGGATTTTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTATGA

Protein sequence

MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL

Homology

[Close]

BLAST of Tan0008008 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-26
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 4   SSTMLSSSL---LPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 63
           SS+ LSSSL   L   +  C+ +   LC           +R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILNKGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

[Close]

BLAST of Tan0008008 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-52
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASSS +LSSSLLPARAP C++QDGRLCLFQIG VRANNSR+R PF VQAAKPPAGVELP
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAE+WNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-51
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASSS MLSSSLLPARAPT NRQDGRLCLFQIG VRANNSRAR PF VQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 3.1e-51
Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASS+T+LSSSLLPARAP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 106/119 (89.08%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASS+T+LSSSLLPA AP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 106/121 (87.60%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGY-VRANNSRARTPFTVQ-AAKPPAGVE 60
           MASSS +L SSL PARA TCN QD R CLFQIGY VRAN+SRART F +Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of Tan0008008 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASSS MLSSSLLPARAPT NRQDGRLCLFQIG VRANNSRAR PF VQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASS+T+LSSSLLPARAP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 60
           MASS+T+LSSSLLPARAP C+RQDGRLCLFQ+G VRANN RAR PF VQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of Tan0008008 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.3e-46
Identity = 106/121 (87.60%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIGY-VRANNSRARTPFTVQ-AAKPPAGVE 60
           MASSS +L SSL PARA TCN QD R CLFQIGY VRAN+SRART F +Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of Tan0008008 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.9e-42
Identity = 104/121 (85.95%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MASSSTMLSSSLLPARAPTCNRQDGRLCLFQIG-YVRANNSRARTPFTVQ-AAKPPAGVE 60
           MASSS +L SSL PARA T N+QDGR  LFQIG  VRANNSRAR  F VQ AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120

[Close]

BLAST of Tan0008008 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-28
Identity = 68/119 (57.14%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 4   SSTMLSSSL---LPARAPTCNRQDGRLCLFQIGYVRANNSRARTPFTVQAAKPPAGVELP 63
           SS+ LSSSL   L   +  C+ +   LC           +R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILNKGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of Tan0008008 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	1.2e-26	57.14	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Tan0008008 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905156.1	2.2e-52	91.60	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022145630.1	2.4e-51	91.60	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]
XP_022934608.1	3.1e-51	89.92	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]
XP_023526506.1	1.6e-50	89.08	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp....	[more]
XP_004137791.1	1.5e-45	87.60	light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN...	[more]

BLAST of Tan0008008 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CV10	1.2e-51	91.60	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A6J1J0W8	1.5e-51	89.92	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	1.5e-51	89.92	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]
A0A0A0LAI0	7.3e-46	87.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	4.9e-42	85.95	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of Tan0008008 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	8.8e-28	57.14	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..116
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..116
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 59..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0008008.1	Tan0008008.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane