Tan0007993 (gene) Snake gourd v1

Overview
NameTan0007993
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionATP-binding/protein serine/threonine kinase
LocationLG01: 80296361 .. 80296707 (+)
RNA-Seq ExpressionTan0007993
SyntenyTan0007993
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAATCCTCAACTAAGTTAGCTTGTTTGCTTCTGATGTTCTTCATTGTCTCTGGTATATATAAAAATTATTTTAATTTTTCCTATCCTATATATTTTCTCTCGACCATTTTTATAAGTTAACTTGAATGACAATTATAAGTGTAAATGTTTCAGGATCAGTGTTCATGGCAGAGGCAAGAAACGTAGTCAACATTCCATGCAATATTCCTAATGATTGTGATCCCAATCCATTTAAGTGTGATTGTCGAATGAACCTATGTTTTTGCCACCCAGAATCTGAAATGAAATTGTTCGACCAAATCTTCCCTGAATATTTGAAAGAACAAAAGACAATTCCATGA

mRNA sequence

ATGGAGAAATCCTCAACTAAGTTAGCTTGTTTGCTTCTGATGTTCTTCATTGTCTCTGGATCAGTGTTCATGGCAGAGGCAAGAAACGTAGTCAACATTCCATGCAATATTCCTAATGATTGTGATCCCAATCCATTTAAGTGTGATTGTCGAATGAACCTATGTTTTTGCCACCCAGAATCTGAAATGAAATTGTTCGACCAAATCTTCCCTGAATATTTGAAAGAACAAAAGACAATTCCATGA

Coding sequence (CDS)

ATGGAGAAATCCTCAACTAAGTTAGCTTGTTTGCTTCTGATGTTCTTCATTGTCTCTGGATCAGTGTTCATGGCAGAGGCAAGAAACGTAGTCAACATTCCATGCAATATTCCTAATGATTGTGATCCCAATCCATTTAAGTGTGATTGTCGAATGAACCTATGTTTTTGCCACCCAGAATCTGAAATGAAATTGTTCGACCAAATCTTCCCTGAATATTTGAAAGAACAAAAGACAATTCCATGA

Protein sequence

MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHPESEMKLFDQIFPEYLKEQKTIP
Homology
BLAST of Tan0007993 vs. NCBI nr
Match: KAE8651915.1 (hypothetical protein Csa_006059 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHPE 60
          M KSSTKLA LLLMFFI+S  +F+A ARNVVNIPCN   DC  +P+ CDC++NLCFCHP 
Sbjct: 1  MVKSSTKLALLLLMFFIIS-EMFVANARNVVNIPCNSRIDCS-DPWDCDCKLNLCFCHPH 60

Query: 61 S-EMKLFDQIFPEYLKEQKT 80
            E K     FPE+L+E+KT
Sbjct: 61 GLEKKFLHNAFPEHLREEKT 78

BLAST of Tan0007993 vs. NCBI nr
Match: KGN61957.1 (hypothetical protein Csa_006779 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 1.9e-12
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHPE 60
          M K  TK A   LM FI+S  +F+++ARNVVNIPC    DC  +P+ CDC++NLCFCHP 
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCS-DPWDCDCKLNLCFCHPH 60

Query: 61 S-EMKLFDQIFPEYLKEQK 79
            E K   + FPE L+E +
Sbjct: 61 GLEKKFLHKAFPESLREDR 78

BLAST of Tan0007993 vs. NCBI nr
Match: OMO57769.1 (ATP-binding/protein serine/threonine kinase [Corchorus olitorius])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 1  MEKSS-TKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHP 60
          MEK++  K+  L  +    +GS    EARN +NIPCN   DC P+P KC+CR+NLCFCHP
Sbjct: 1  MEKTTLMKMIFLAALLINFAGSQVGVEARN-INIPCNTIKDC-PDPVKCECRINLCFCHP 58

BLAST of Tan0007993 vs. NCBI nr
Match: EOY32073.1 (Uncharacterized protein TCM_039538 [Theobroma cacao])

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHP 60
          M+K S KL  L  +     G     EARN +N PCN   DC  +P KC+CRMNLCFCHP
Sbjct: 1  MDKFSFKLIFLATLLVFALGLQVGVEARN-INTPCNTVKDC-ADPIKCECRMNLCFCHP 57

BLAST of Tan0007993 vs. NCBI nr
Match: EOY32074.1 (Uncharacterized protein TCM_039540 [Theobroma cacao])

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHP 60
          MEK S KL  L  +     G     EARN +N PCN   DC  +P KC+CR+NLCFCHP
Sbjct: 1  MEKFSFKLIFLAALLVFALGLQVGVEARN-INTPCNTVKDC-ADPIKCECRINLCFCHP 57

BLAST of Tan0007993 vs. ExPASy TrEMBL
Match: A0A0A0LJR0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHPE 60
          M KSSTKLA LLLMFFI+S   F+A+ARNVVNIPCN   DC  +P+ CDC++NLCFCHP 
Sbjct: 1  MVKSSTKLALLLLMFFIIS-ETFVADARNVVNIPCNSRIDCS-DPWDCDCKLNLCFCHPH 60

Query: 61 S-EMKLFDQIFPEYLKEQKT 80
            E K     FPE+L+E+KT
Sbjct: 61 GLEKKFLHNAFPEHLREEKT 78

BLAST of Tan0007993 vs. ExPASy TrEMBL
Match: A0A0A0LMG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.4e-13
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHPE 60
          M K  TK A   LM FI+S  +F+++ARNVVNIPC    DC  +P+ CDC++NLCFCHP 
Sbjct: 1  MVKPLTKFALFFLMVFIISEKLFVSDARNVVNIPCQSRIDCS-DPWDCDCKLNLCFCHPH 60

Query: 61 S-EMKLFDQIFPEYLKEQK 79
            E K   + FPE L+E +
Sbjct: 61 GLEKKFLHKAFPESLREDR 78

BLAST of Tan0007993 vs. ExPASy TrEMBL
Match: A0A1R3GI95 (ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=COLO4_35133 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 1  MEKSS-TKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHP 60
          MEK++  K+  L  +    +GS    EARN +NIPCN   DC P+P KC+CR+NLCFCHP
Sbjct: 1  MEKTTLMKMIFLAALLINFAGSQVGVEARN-INIPCNTIKDC-PDPVKCECRINLCFCHP 58

BLAST of Tan0007993 vs. ExPASy TrEMBL
Match: A0A2N9FRQ0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.6e-06
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHPE 60
          MEKSS KLA ++++  I S   F  +ARNVV IPC   NDC  +  KCDC  N C C P 
Sbjct: 1  MEKSSLKLALIVVLLLIASSFQFRVDARNVVVIPCETYNDCRDSA-KCDCVHNHCRC-PG 60

Query: 61 SEMKLFDQIFPEYLK 76
           E   F +    +LK
Sbjct: 61 EEQDFFTKAITNHLK 73

BLAST of Tan0007993 vs. ExPASy TrEMBL
Match: A0A061GRN9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039538 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 1  MEKSSTKLACLLLMFFIVSGSVFMAEARNVVNIPCNIPNDCDPNPFKCDCRMNLCFCHP 60
          M+K S KL  L  +     G     EARN +N PCN   DC  +P KC+CRMNLCFCHP
Sbjct: 1  MDKFSFKLIFLATLLVFALGLQVGVEARN-INTPCNTVKDC-ADPIKCECRMNLCFCHP 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8651915.14.5e-1762.50hypothetical protein Csa_006059 [Cucumis sativus][more]
KGN61957.11.9e-1250.63hypothetical protein Csa_006779 [Cucumis sativus][more]
OMO57769.11.0e-0551.67ATP-binding/protein serine/threonine kinase [Corchorus olitorius][more]
EOY32073.12.3e-0550.85Uncharacterized protein TCM_039538 [Theobroma cacao][more]
EOY32074.13.0e-0550.85Uncharacterized protein TCM_039540 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
A0A0A0LJR01.7e-1762.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285280 PE=4 SV=1[more]
A0A0A0LMG39.4e-1350.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G276990 PE=4 SV=1[more]
A0A1R3GI955.0e-0651.67ATP-binding/protein serine/threonine kinase OS=Corchorus olitorius OX=93759 GN=C... [more]
A0A2N9FRQ08.6e-0645.33Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17804 PE=4 SV=1[more]
A0A061GRN91.1e-0550.85Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_039538 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007993.1Tan0007993.1mRNA