Tan0007837 (gene) Snake gourd v1

Overview


Name	Tan0007837
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Pyridoxal kinase
Location	LG04: 76478049 .. 76478956 (+)
RNA-Seq Expression	Tan0007837
Synteny	Tan0007837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCACTGATCCTCTTGTTAACTCTGCCGTCAATGACTGTTCAGGTATGCTCAATAGTTTACGATGACTGTGGATGATTTGGAAGAAATCAATATAAACTTGCAATTCAGGTTGTTTTGGTTGCCTCCATTAGGCTTTTCTGCAGAAGTTTCCTTCAGTTTTACTGCAAATTTGTATCCTTAAGGCCCCGTTTGATAACGATTTTGTTTTTTGTTTTTTGTTTTTGAAATTTAAATCTAAAAATACTACTTCTTCCAATGAGTTTATATGTTTTCTAATCTACTTTGTACCTATGTTTTCAAAAACTAAGCCAACTTTTGAAAACTAAAAAAAGTAGCTTTCAAAAACTTGACTTTGTTTTTAGAATTTGACTAAGAATTCAAATACTTACTTAATGGAGATGATCTCTATTATAGAGAACTTAGGTAAAAATAAGCTTAACTTTCAAAAACTAAAAACCAAAAACAAAATGGTTATCAAACGGGCCCTAAAGATGTTGTTTTTGTTACAACTGTTGTGTTTTGAAGAGAGTTGACTTTATAGTTCTTATGTTTGTCCTCTTGTAAATCTTCTTAAGAAAAGAAAACTCGATGTTACTTTTGTGCCTAGCGAATTTCAGCAGATCGTTTGTTGGTACTAATTCTTATATTGTTCTTGATTGTCTTTATTTCCATGCTATTAGTTTGACTCTAATGAATTGTTTGCTTGTGTTCTGCTGTAGGAATATGTCGGGAACAAATCAGCTGTTTTTCCTCTCCAACAACTACTGGGCTATGATGTAGACCCAATAAACTCTGTGCAGTTCTCAAATCACACAGGCAAGCTGATTCTATTTCTTCACTCAAATGGTCTCAGAACTCTGAGGTCTGATATACGGTGTGATGCCTTAGGTCATTATCCATGA

mRNA sequence

ATGTCGCCACTGATCCTCTTGTTAACTCTGCCGTCAATGACTGTTCAGGAATATGTCGGGAACAAATCAGCTGTTTTTCCTCTCCAACAACTACTGGGCTATGATGTAGACCCAATAAACTCTGTGCAGTTCTCAAATCACACAGGCAAGCTGATTCTATTTCTTCACTCAAATGGTCTCAGAACTCTGAGGTCTGATATACGGTGTGATGCCTTAGGTCATTATCCATGA

Coding sequence (CDS)

ATGTCGCCACTGATCCTCTTGTTAACTCTGCCGTCAATGACTGTTCAGGAATATGTCGGGAACAAATCAGCTGTTTTTCCTCTCCAACAACTACTGGGCTATGATGTAGACCCAATAAACTCTGTGCAGTTCTCAAATCACACAGGCAAGCTGATTCTATTTCTTCACTCAAATGGTCTCAGAACTCTGAGGTCTGATATACGGTGTGATGCCTTAGGTCATTATCCATGA

Protein sequence

MSPLILLLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSDIRCDALGHYP

Homology

[Close]

BLAST of Tan0007837 vs. ExPASy Swiss-Prot
Match: Q8W1X2 (Pyridoxal kinase OS=Arabidopsis thaliana OX=3702 GN=PK PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 4.2e-12
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTG 50
          +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTG
Sbjct: 18 VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTG 59

[Close]

BLAST of Tan0007837 vs. ExPASy Swiss-Prot
Match: Q0II59 (Pyridoxal kinase OS=Bos taurus OX=9913 GN=PDXK PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-08
Identity = 31/72 (43.06%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLI---LFLHSNGLRTL 66
          +L++ S  V+ YVGN++A FPL Q+LG++VD +NSVQFSNHTG        L+S+ L+ L
Sbjct: 7  VLSIQSHVVRGYVGNRAATFPL-QVLGFEVDAVNSVQFSNHTGYSHWKGQVLNSDELQEL 66

Query: 67 RSDIRCDALGHY 76
             ++ +++  Y
Sbjct: 67 YDGLKLNSVNQY 77

[Close]

BLAST of Tan0007837 vs. ExPASy Swiss-Prot
Match: O00764 (Pyridoxal kinase OS=Homo sapiens OX=9606 GN=PDXK PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.8e-08
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLI---LFLHSNGLRTL 66
          +L++ S  ++ YVGN++A FPL Q+LG+++D +NSVQFSNHTG        L+S+ L+ L
Sbjct: 7  VLSIQSHVIRGYVGNRAATFPL-QVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQEL 66

Query: 67 RSDIRCDALGHY 76
             +R + +  Y
Sbjct: 67 YEGLRLNNMNKY 77

[Close]

BLAST of Tan0007837 vs. ExPASy Swiss-Prot
Match: O46560 (Pyridoxal kinase OS=Sus scrofa OX=9823 GN=PDXK PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-08
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
          +L++ S  V+ YVGN++A FPL Q+LG++VD +NSVQFSNHTG    + H  G + L SD
Sbjct: 17 VLSIQSHVVRGYVGNRAATFPL-QVLGFEVDAVNSVQFSNHTG----YAHWKG-QVLNSD 70

[Close]

BLAST of Tan0007837 vs. ExPASy Swiss-Prot
Match: Q8K183 (Pyridoxal kinase OS=Mus musculus OX=10090 GN=Pdxk PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 26/43 (60.47%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTG 50
          +L++ S  V+ YVGN++A+FPL Q+LG++VD +NSVQFSNHTG
Sbjct: 7  VLSIQSHVVRGYVGNRAAMFPL-QVLGFEVDAVNSVQFSNHTG 48

[Close]

BLAST of Tan0007837 vs. NCBI nr
Match: KAG7017950.1 (Pyridoxal kinase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-16
Identity = 53/77 (68.83%), Postives = 55/77 (71.43%), Query Frame = 0


Query: 1  MSPLILLLTLPSM----------TVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGK 60
          MSP IL L LPS           TVQ YVGNKSAVFPL QLLGYDVDPINSV FSNHTGK
Sbjct: 1  MSPPILSLALPSATGRVLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVHFSNHTGK 60

Query: 61 LILFLHSNGLRTLRSDI 68
          LILFLHSNG  T +  +
Sbjct: 61 LILFLHSNGYPTFKGQV 76

[Close]

BLAST of Tan0007837 vs. NCBI nr
Match: XP_010660338.1 (PREDICTED: pyridoxal kinase isoform X4 [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 7   LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
           +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGKL L LHSN LRTL+ +
Sbjct: 51  VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGKL-LILHSNSLRTLKPE 110

Query: 67  I-RCDALGHYP 77
           I + + L  YP
Sbjct: 111 ICQLEYLAGYP 119

[Close]

BLAST of Tan0007837 vs. NCBI nr
Match: XP_034707299.1 (pyridoxal kinase-like isoform X2 [Vitis riparia])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
          +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGKL L LHSN LRTL+ +
Sbjct: 18 VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGKL-LILHSNSLRTLKPE 77

Query: 67 I-RCDALGHYP 77
          I + + L  YP
Sbjct: 78 ICQLEYLAGYP 86

[Close]

BLAST of Tan0007837 vs. NCBI nr
Match: XP_034672927.1 (pyridoxal kinase isoform X1 [Vitis riparia])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 7   LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
           +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGKL L LHSN LRTL+ +
Sbjct: 51  VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGKL-LILHSNSLRTLKPE 110

Query: 67  I-RCDALGHYP 77
           I + + L  YP
Sbjct: 111 ICQLEYLAGYP 119

[Close]

BLAST of Tan0007837 vs. NCBI nr
Match: XP_010660337.1 (PREDICTED: pyridoxal kinase isoform X3 [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 7   LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
           +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGKL L LHSN LRTL+ +
Sbjct: 51  VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGKL-LILHSNSLRTLKPE 110

Query: 67  I-RCDALGHYP 77
           I + + L  YP
Sbjct: 111 ICQLEYLAGYP 119

[Close]

BLAST of Tan0007837 vs. ExPASy TrEMBL
Match: W9SZ44 (Pyridoxal kinase OS=Morus notabilis OX=981085 GN=L484_015558 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.5e-15
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MSPLILLLTLP----------SMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGK 60
          M+P IL L LP          S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGK
Sbjct: 1  MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGK 60

Query: 61 LILFLHSNGLR 62
          LIL LHSN L+
Sbjct: 61 LILLLHSNSLK 70

[Close]

BLAST of Tan0007837 vs. ExPASy TrEMBL
Match: A0A1Q3C6I5 (Pyridoxal kinase (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19305 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.7e-14
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 1   MSPLILLLTLP----------SMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGK 60
           M+P IL L LP          S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGK
Sbjct: 42  MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGK 101

Query: 61  LILFLHSNGLRTLRSDI 68
           L+  LHSN   T +  +
Sbjct: 102 LLTLLHSNRYPTFKGQV 117

[Close]

BLAST of Tan0007837 vs. ExPASy TrEMBL
Match: A0A6N2NAU8 (Pyridoxal kinase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS475684 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 48/71 (67.61%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 1  MSPLILLLTLP----------SMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGK 60
          M+P IL L LP          S TVQ YVGNKSAVFPL QLLGYDVDP+NSVQFSNHTGK
Sbjct: 24 MAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPVNSVQFSNHTGK 83

Query: 61 LILFLHSNGLR 62
          L++ LHS  LR
Sbjct: 84 LLILLHSISLR 93

[Close]

BLAST of Tan0007837 vs. ExPASy TrEMBL
Match: A0A2P6RSV5 (Pyridoxal kinase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0122561 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
          +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTGKL+LF HSN   T +  
Sbjct: 18 VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTGKLLLF-HSNRYPTFKGQ 76

Query: 67 I 68
          +
Sbjct: 78 V 76

[Close]

BLAST of Tan0007837 vs. ExPASy TrEMBL
Match: M5WW33 (Pyridoxal kinase (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023429mg PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.8e-13
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTGKLILFLHSNGLRTLRSD 66
          +L+  S TVQ YVGNKSAVFPL QLLGYDVDPINS  FSNHTGKL+L LHSN LR LR D
Sbjct: 34 VLSSQSHTVQGYVGNKSAVFPL-QLLGYDVDPINS--FSNHTGKLLL-LHSNSLRILRPD 93

Query: 67 IRCDA 72
          +  DA
Sbjct: 94 MWRDA 94

[Close]

BLAST of Tan0007837 vs. TAIR 10
Match: AT5G37850.1 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-13
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTG 50
          +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTG
Sbjct: 52 VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTG 93

[Close]

BLAST of Tan0007837 vs. TAIR 10
Match: AT5G37850.2 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-13
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTG 50
          +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTG
Sbjct: 18 VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTG 59

[Close]

BLAST of Tan0007837 vs. TAIR 10
Match: AT5G37850.3 (pfkB-like carbohydrate kinase family protein )

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-13
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 7  LLTLPSMTVQEYVGNKSAVFPLQQLLGYDVDPINSVQFSNHTG 50
          +L++ S TVQ YVGNKSAVFPL QLLGYDVDPINSVQFSNHTG
Sbjct: 52 VLSIQSHTVQGYVGNKSAVFPL-QLLGYDVDPINSVQFSNHTG 93

The following BLAST results are available for this feature:

BLAST of Tan0007837 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W1X2	4.2e-12	83.72	Pyridoxal kinase OS=Arabidopsis thaliana OX=3702 GN=PK PE=1 SV=2	[more]
Q0II59	3.7e-08	43.06	Pyridoxal kinase OS=Bos taurus OX=9913 GN=PDXK PE=2 SV=1	[more]
O00764	4.8e-08	41.67	Pyridoxal kinase OS=Homo sapiens OX=9606 GN=PDXK PE=1 SV=1	[more]
O46560	8.3e-08	51.67	Pyridoxal kinase OS=Sus scrofa OX=9823 GN=PDXK PE=1 SV=1	[more]
Q8K183	1.1e-07	60.47	Pyridoxal kinase OS=Mus musculus OX=10090 GN=Pdxk PE=1 SV=1	[more]

BLAST of Tan0007837 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017950.1	4.6e-16	68.83	Pyridoxal kinase [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_010660338.1	1.0e-15	71.83	PREDICTED: pyridoxal kinase isoform X4 [Vitis vinifera]	[more]
XP_034707299.1	1.0e-15	71.83	pyridoxal kinase-like isoform X2 [Vitis riparia]	[more]
XP_034672927.1	1.0e-15	71.83	pyridoxal kinase isoform X1 [Vitis riparia]	[more]
XP_010660337.1	1.0e-15	71.83	PREDICTED: pyridoxal kinase isoform X3 [Vitis vinifera]	[more]

BLAST of Tan0007837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9SZ44	5.5e-15	71.83	Pyridoxal kinase OS=Morus notabilis OX=981085 GN=L484_015558 PE=3 SV=1	[more]
A0A1Q3C6I5	4.7e-14	63.64	Pyridoxal kinase (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19305 ...	[more]
A0A6N2NAU8	1.0e-13	67.61	Pyridoxal kinase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS475684 PE=3 SV=1	[more]
A0A2P6RSV5	1.8e-13	72.13	Pyridoxal kinase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0122561 PE=3 SV=1	[more]
M5WW33	6.8e-13	73.85	Pyridoxal kinase (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa023429mg PE=3 ...	[more]

BLAST of Tan0007837 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37850.1	3.0e-13	83.72	pfkB-like carbohydrate kinase family protein	[more]
AT5G37850.2	3.0e-13	83.72	pfkB-like carbohydrate kinase family protein	[more]
AT5G37850.3	3.0e-13	83.72	pfkB-like carbohydrate kinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029056	Ribokinase-like	GENE3D	3.40.1190.20		coord: 6..72 e-value: 1.4E-11 score: 46.2
IPR004625	Pyridoxine kinase	PANTHER	PTHR10534	PYRIDOXAL KINASE	coord: 8..49
None	No IPR available	PANTHER	PTHR10534:SF2	PYRIDOXAL KINASE	coord: 8..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007837.1	Tan0007837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0009443	pyridoxal 5'-phosphate salvage
molecular_function	GO:0008478	pyridoxal kinase activity