Tan0007814 (gene) Snake gourd v1

Overview


Name	Tan0007814
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Location	LG02: 75727264 .. 75729764 (-)
RNA-Seq Expression	Tan0007814
Synteny	Tan0007814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTACAAAAGGAAAAACGCACGAGTTCGAGCCAAATCATCGAAGAGGACGCTATTGTCGCATGGGTGTTGCAAAGGGTTGGTCTGTGGTTGCTGCTGCACCAACGTGGGTCGCTTGCTCGAAGGCGTGCCCTTGGTACAACTGGAGAAGAGTAAGACGCGAAATAGTGGGTTCCCAACTGTTGAAACACACGAGAATGGGGGTGGCAGTTGTGCGACTGTACGCGAAGAAGGAGAATGAGAAAAGGAAAAAAAAGCTTGGTAGACCAAAAAAACCCAAATTAGGGTTTTTCTTTTGTTTTTTCGTGTTTTTTTTTATTTTTTAGTAGACCAACAAACCCCAAATTTATCTCCAATAAATGAGAAAGGGAAAAGGATCTATGATTTAAAACCCAAATTTACTCCCAAAAGATTTTCCAAATCTTATGCCAATCTAAGACAAATCCTTTGGGCATTTAAATCAAAAGTCAAACTATTAAATCCAACTAAGATAAAGAAGAGGTGAATGCCAAATTACTAGCAACGTTTACTAAAGAAGAGGTCGAAGTAGCTATAAAGAGTTTCGACCCGTCTAAAGCCCCAGGCCTCAGATGGCTTTCCAACTCTGTTCTACCAGAAATACTGGGATATAGTAGGACCGAAGTTGACACAGAGTTGTTTGGATGTCCTTAATAAGAAGTGTTCAGTGACATAGTGGAATAAGACTCACATAGTTTTAATCGCAAAAGTTCGTGATCCAAAAGAGGTGACAGATTTTCTCTCTATTAGCTTGTGTAATGTCACTTATAAAATAGTACAAAGGTTTTGGCAAATAGGATGAAGGTGTTGTTACCTGAGATTACAGATGGGTTCCAATCAACATTTATCCAAGGAAGGTCGATTACAGATAACCTAATTATAGGTCATGAATGCCTTCATGTTCTCAGACATCGAAGGAAAAATGGTATAGGTCTGGCTGCTCTAAAACTAGATATGTGCAAAGCATGTGATAGAGTTGAATGGAGTTTCATAAGGGTTGTTATGTTGGCGTTGGGGTTTAGCGAAAGGTGGGTAAGCCTGATTACGGAATGTATAACTACTTCATCTTTGACAATTCTGATAAATGGGCAACCGGTGGGGAATGTGGAACCTACAAGAGGTCTACATCAAGGGGATCCCCTGTCACTCTATTTATCTCTCTTTTGTATGGAAGGACTTTCAACACTTATGAAGGAGGAAGTCGTTGGTGGTGTGTTATCTGGGTTGTCCTTATCACGTAATGGTCCTCAAGTGTCCCACCTCTTTTTTGCAGATGATTGTCTGTAGTTTGTTAAAGAAAATGCTTTTGAATTTGGTTAGCTTAAGTATGTGTTACGTATCTATGAGAGGGTGTCACGTCAAAGTATTAACTTGTGAAAGTCGGTTATGTACTTTTCTCCGAATGTTATGGTTGATACTACGAAATACTTACAGGAGATTCTTGATATTACAGTTGTGGACAGGCTGGGAACTTACTTAGGTCTTCCATCATCTTTTTCCCGTAGCAAGAAGAATGATTTTCAAAAGATTAAAGACCGCGTTTGGAAGGTCTTGCAGGGTTGGAAGAACCAGTTCTTTTCAGCAAGTGGAAAGGAGGTCTTGATCAAGAGTATTGTTCAGGCTATCCCGACTTATGCAATGAGTTGTTTTAGGTTACCAAAAGCACTCTGTAACCAGATTTCGGGTGCAGTTTTGAAATTCTGGTGGGGGACTAAAAACGACATAGGAAAATGTCATGGATGAATTGGGCTAAGATGTGTAGGCTAAAGGAGTTAGAGGGCCTGAATTTTAGAGATTGGGAAGGCTTTAATCAGGCGTTGATAACAAAACAAGCGTGGTGAATGCTGACAAATCCAGATTTAGTAGTGTGTCAGGTTCTCAAGGCTTGGTATTTTCAGAATTATGAACTCCTAGACTTGCCTACTAATGCGACGGGACCAAATTCGTCTTATTTTTAGAAGAGTTTAGTTTGGGGTTTAGAGCTTCTGAAAAAAGGAGTCAGATGGAATTTGGGAAGTGGAAATGTGATACGCATCAGTAAAGATCTGTGGTTACCTAGATCATGGTCTTTCAATGTAAGGAACCTTCGACAGTGTCCGGGTAATCTATATGTTGCAGATTTTATTACTCCTGCCAGGTTGTGGGATGTGGATAAGTTGGATCTTTATTTTGATGACCAGGAGGTGCGCGAAATAAGCAGAGTCCCTTTTTCTTCGACAGGTGGGGTGGATCGTCTGGTGTGGCATTTTGACAAATTTGGTAAGTATTCAGTTAAGAGTGGTTATAAGGCTGTTATGTTGTCTATAGAGGTTGGGGCGTCATCTAGTGGAAATACCTTTGGGCATTGGTGGAAGAGGGTGTGGAAGGCGGGGGTACCTCCTAGGGTGAAGTTGTTTATATGGAGAGCTTTTCATGATTGTATCCCAACTATGGCAAATCTACATCATCGAAGGCTGGATGTTTCTATGCCTTGCCCGTAA

mRNA sequence

ATGATAGTACAAAAGGAAAAACGCACGAGTTCGAGCCAAATCATCGAAGAGGACGCTATTGTCGCATGGGTGTTGCAAAGGGTTGGTCTGTGGTTGCTGCTGCACCAACGTGGGTCGCTTGCTCGAAGGCGTGCCCTTGGTACAACTGGAGAAGAGTTGTGGGATGTGGATAAGTTGGATCTTTATTTTGATGACCAGGAGGTGCGCGAAATAAGCAGAGTCCCTTTTTCTTCGACAGGTGGGGTGGATCGTCTGGTGTGGCATTTTGACAAATTTGAGGTTGGGGCGTCATCTAGTGGAAATACCTTTGGGCATTGGTGGAAGAGGGTGTGGAAGGCGGGGGTACCTCCTAGGGTGAAGTTGTTTATATGGAGAGCTTTTCATGATTGTATCCCAACTATGGCAAATCTACATCATCGAAGGCTGGATGTTTCTATGCCTTGCCCGTAA

Coding sequence (CDS)

ATGATAGTACAAAAGGAAAAACGCACGAGTTCGAGCCAAATCATCGAAGAGGACGCTATTGTCGCATGGGTGTTGCAAAGGGTTGGTCTGTGGTTGCTGCTGCACCAACGTGGGTCGCTTGCTCGAAGGCGTGCCCTTGGTACAACTGGAGAAGAGTTGTGGGATGTGGATAAGTTGGATCTTTATTTTGATGACCAGGAGGTGCGCGAAATAAGCAGAGTCCCTTTTTCTTCGACAGGTGGGGTGGATCGTCTGGTGTGGCATTTTGACAAATTTGAGGTTGGGGCGTCATCTAGTGGAAATACCTTTGGGCATTGGTGGAAGAGGGTGTGGAAGGCGGGGGTACCTCCTAGGGTGAAGTTGTTTATATGGAGAGCTTTTCATGATTGTATCCCAACTATGGCAAATCTACATCATCGAAGGCTGGATGTTTCTATGCCTTGCCCGTAA

Protein sequence

MIVQKEKRTSSSQIIEEDAIVAWVLQRVGLWLLLHQRGSLARRRALGTTGEELWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDKFEVGASSSGNTFGHWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP

Homology

[Close]

BLAST of Tan0007814 vs. NCBI nr
Match: XP_030486845.1 (uncharacterized protein LOC115703751 [Cannabis sativa])

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-13
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 0


Query: 49   TGEELWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDK----------------F 108
            T E  W+++ L+ YF   +V  I  +P + T   D L+WH +                  
Sbjct: 977  TAERYWNLNLLNSYFIPSDVERILSIPLTLTPCSDALIWHHEHNGCYTVKSGYFMATNLE 1036

Query: 109  EVGASSSGNTFGHWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
            E   S SG     WWK+ W+  +P +V++F+WRA +DC+P  A LHH+ +  S  CP
Sbjct: 1037 EQQPSISGTQSQQWWKKFWRLSLPSKVRIFLWRAINDCLPATAVLHHKHIAQSPICP 1093

[Close]

BLAST of Tan0007814 vs. NCBI nr
Match: XP_011470502.1 (PREDICTED: uncharacterized protein LOC105353223 [Fragaria vesca subsp. vesca])

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-12
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 47  GTTGEELWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDK---------FEVG-- 106
           G +GE  W+   L   F D E R I ++P S  GG DR +WHFD+         + V   
Sbjct: 15  GESGE--WEKWMLKELFTDVEARAIGKIPLSLRGGEDRWMWHFDQKGLYSVRSGYHVARK 74

Query: 107 ------ASSSGNTFGHW---WKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSM 150
                  +SS ++ G W   WK+VWK  VPP+V+L  WR   + +PT   L  + +D+S+
Sbjct: 75  VEHLTTIASSSSSHGGWRSIWKKVWKVNVPPKVRLHAWRILREVLPTKWALKKKGVDLSV 134

[Close]

BLAST of Tan0007814 vs. NCBI nr
Match: KAA0067681.1 (UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 8.0e-12
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 53  LWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDKFEVGASSSG--------NTFG 112
           LWD++ L L   ++EV  +S +PF  T  V   +WHFD     +  SG        N  G
Sbjct: 36  LWDLNWLHLVLSEEEVLLVSGLPFGGT-MVASWMWHFDPKGFHSVHSGYRLFMFHHNMIG 95

Query: 113 --------HWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
                   HWW R+WK  +P ++K+ +WRAFH  +P +  L  RR+D+S  CP
Sbjct: 96  CSDSSVTKHWWIRLWKLNIPAKIKILMWRAFHMILPVLTCLVDRRMDISPLCP 147

[Close]

BLAST of Tan0007814 vs. NCBI nr
Match: XP_021603893.1 (uncharacterized protein LOC110608920 [Manihot esculenta])

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-11
Identity = 37/110 (33.64%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 53  LWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDK-------------FEVGASSS 112
           +W++  L   F  +++R I  +P S T   D  +WHFDK              ++   SS
Sbjct: 393 VWNIALLMELFSSRDIRAIISIPISITSKEDSFLWHFDKRGVYTVKSAYFVCIDLLGRSS 452

Query: 113 GNTFGHWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
            N  G  W  +W   VPP+VK F WRA+ + +PT  NL  + +DV   CP
Sbjct: 453 FNVGGELWTNLWNVSVPPKVKDFCWRAYRNILPTKDNLRQKGVDVDARCP 502

[Close]

BLAST of Tan0007814 vs. NCBI nr
Match: XP_021668479.1 (uncharacterized protein LOC110656165 [Hevea brasiliensis])

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-11
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 54  WDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDK---------FEVGASSSGNTFG 113
           WD++ L   F  ++V  IS +P S     D  +WHFDK         + V     G   G
Sbjct: 14  WDINLLRGIFQGRDVEVISSMPISIFDKEDTWIWHFDKRGKYLVKSAYHVARDMRGGVEG 73

Query: 114 H----WWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSM 147
                 W+++W   +PP++K F+WRA+ D +PT  NL  R LDVS+
Sbjct: 74  RNPHDHWRKLWNLAIPPKIKNFLWRAYKDILPTKVNLRRRGLDVSL 119

[Close]

BLAST of Tan0007814 vs. ExPASy TrEMBL
Match: A0A803NN93 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-14
Identity = 38/116 (32.76%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 49  TGEELWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHF---DKFEVGA--------- 108
           + +  WD+DKL   F   +V  I ++P S   G D  VWH+   + + V +         
Sbjct: 652 SADHQWDIDKLTSDFSALDVENILKIPLSHNAGTDSWVWHYTDAESYTVNSGYHLACSMA 711

Query: 109 ----SSSGNTFGHWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPC 149
               SS  +    WWK+ W   +P +VK+F WR  H+ +P+ +NLHHRR+  S  C
Sbjct: 712 SQEDSSCSSASSTWWKQFWNLNLPSKVKIFAWRVMHNALPSASNLHHRRIINSSTC 767

[Close]

BLAST of Tan0007814 vs. ExPASy TrEMBL
Match: A0A803LRA3 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.8e-13
Identity = 42/113 (37.17%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 54  WDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDK-----------------FEVGA 113
           W  D L  +F D EV EI ++P +  GG D   WHF K                  E  A
Sbjct: 21  WRADLLSSHFLDWEVEEILKIPIARYGGEDVWTWHFTKNGEFSVRSAYHVELKASLESRA 80

Query: 114 SSSGNTFGHWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
           SSSG      W R+WKA +PP++KLF WR  H+ I   ++L  R + V   CP
Sbjct: 81  SSSGAENSTVWNRLWKANIPPKIKLFGWRVLHESIAVRSSLSMRGMSVDSTCP 133

[Close]

BLAST of Tan0007814 vs. ExPASy TrEMBL
Match: A0A803PEK6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 0


Query: 45   ALGTTGEELWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDKFEVGASSSGNTF- 104
            +L T G   WDV+ +D  F++++   I ++P      +D ++W FD   + +  S     
Sbjct: 1130 SLMTPGLRCWDVELIDDLFNERDKNLILQIPLQVAECIDHVIWSFDSSGLYSVKSAYNIL 1189

Query: 105  ----GHW--------WKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
                G W        WK +WK  +PP++K  +WRA  +C+PTM +L  +R++VS+ CP
Sbjct: 1190 QQINGRWSEEEASAFWKSLWKLKIPPKIKNLMWRAGTNCLPTMTHLRTKRVEVSLLCP 1247

[Close]

BLAST of Tan0007814 vs. ExPASy TrEMBL
Match: A0A5A7VQ24 (Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00510 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 53  LWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDKFEVGASSSG--------NTFG 112
           LWD++ L L   ++EV  +S +PF  T  V   +WHFD     +  SG        N  G
Sbjct: 36  LWDLNWLHLVLSEEEVLLVSGLPFGGT-MVASWMWHFDPKGFHSVHSGYRLFMFHHNMIG 95

Query: 113 --------HWWKRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
                   HWW R+WK  +P ++K+ +WRAFH  +P +  L  RR+D+S  CP
Sbjct: 96  CSDSSVTKHWWIRLWKLNIPAKIKILMWRAFHMILPVLTCLVDRRMDISPLCP 147

[Close]

BLAST of Tan0007814 vs. ExPASy TrEMBL
Match: A0A803P9P5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 38/133 (28.57%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 33  LLHQRGSLARRRALGTTGEELWDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFD-- 92
           L+ +  SL+ + +   T +  W+   L   F + +V +I  +P +     D+L+W+F+  
Sbjct: 428 LIFKNPSLSMKVSELITNQRQWNHSLLQQCFLESDVAKIQSIPLTLCDQSDQLIWNFENN 487

Query: 93  ---------------KFEVGASSSGNTFGHWWKRVWKAGVPPRVKLFIWRAFHDCIPTMA 149
                          + ++ A+SS N+   WWK+ W   +P ++K+F+WRA HDC+P   
Sbjct: 488 GMYSVKSGYTLATRLEEQLPAASSNNSL-QWWKKFWSLTLPSKIKIFLWRAMHDCLPVAD 547

[Close]

BLAST of Tan0007814 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-04
Identity = 24/118 (20.34%), Postives = 45/118 (38.14%), Query Frame = 0


Query: 54  WDVDKLDLYFDDQEVREISRVPFSSTGGVDRLVWHFDKFEVGASSSGNTFGHWW------ 113
           WD  K+  + D  +   I R+  + +   D+++W+++        S    G+W       
Sbjct: 88  WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRS----GYWLLTHDPS 147

Query: 114 ----------------KRVWKAGVPPRVKLFIWRAFHDCIPTMANLHHRRLDVSMPCP 150
                            R+W   + P++K F+WRA    + T   L  R + +   CP
Sbjct: 148 TNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCP 201

The following BLAST results are available for this feature:

BLAST of Tan0007814 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007814 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030486845.1	5.5e-13	32.48	uncharacterized protein LOC115703751 [Cannabis sativa]	[more]
XP_011470502.1	2.1e-12	35.77	PREDICTED: uncharacterized protein LOC105353223 [Fragaria vesca subsp. vesca]	[more]
KAA0067681.1	8.0e-12	36.28	UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase ...	[more]
XP_021603893.1	1.8e-11	33.64	uncharacterized protein LOC110608920 [Manihot esculenta]	[more]
XP_021668479.1	2.3e-11	34.91	uncharacterized protein LOC110656165 [Hevea brasiliensis]	[more]

BLAST of Tan0007814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803NN93	5.4e-14	32.76	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803LRA3	7.8e-13	37.17	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A803PEK6	2.3e-12	31.36	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5A7VQ24	3.9e-12	36.28	Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G005...	[more]
A0A803P9P5	5.0e-12	28.57	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Tan0007814 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09510.1	1.7e-04	20.34	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 103..149 e-value: 2.8E-10 score: 40.8
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 58..149
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 58..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007814.1	Tan0007814.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0019205	nucleobase-containing compound kinase activity