Tan0007691 (gene) Snake gourd v1

Overview


Name	Tan0007691
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	LG05: 82523421 .. 82524089 (-)
RNA-Seq Expression	Tan0007691
Synteny	Tan0007691

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATTTATGTTGATGATATTATCCTTACAGGAAATGACATCTCCCACATCCAACAACTCATACACACGTTAAGCTGTGAGTTTGCATTAAAGGACCTAGGAGCACTTCACTACTTCCTCGACATTGAAGTCAAGCCCACATCCAAGGGGATAATATTGTGCCAAGGAAGATATGCTCGTGATCTCCTCTACAAGTCCAAGATGCTCGGTGCATCCTCTATGAGCACACCAATGGCGACATCCACGCAAGACCTACCCAATGATGATCAACCCACTGATGTTAAACAATATCGAAGTCTTGTAGGATCTCTTCAATACCTCACTTTCACTCGTCCTGACATAGTGCAAGCAGTGAATCGAGTTTGTCAACGACTCCAAGATCCTACCATCAAGGATTTCAAGACTGTAAAACGAATTCTTCGATATGTCCAAGGAACAGTGGATCATGGTATCACATTTTACAAACACAGTTCCACTAACTTATATGGTTTTTGTGATGCAGATTGGGGAGGTTGCCCTCTAACACGACGAAGCACAACTGGTTATTGTATTTTCCTCGGTTCCAACTGCATCTCCTGGTCGTCCAAGAAGCAACCAACAATTTCCCGATCAAGCTCCGAAGCTGAATATCGAGCCATGGCGATCTGCAAGTTGCCGCAGAATTAA

mRNA sequence

ATGTTGATTTATGTTGATGATATTATCCTTACAGGAAATGACATCTCCCACATCCAACAACTCATACACACGTTAAGCTGTGAGTTTGCATTAAAGGACCTAGGAGCACTTCACTACTTCCTCGACATTGAAGTCAAGCCCACATCCAAGGGGATAATATTGTGCCAAGGAAGATATGCTCGTGATCTCCTCTACAAGTCCAAGATGCTCGGTGCATCCTCTATGAGCACACCAATGGCGACATCCACGCAAGACCTACCCAATGATGATCAACCCACTGATGTTAAACAATATCGAAGTCTTGTAGGATCTCTTCAATACCTCACTTTCACTCGTCCTGACATAGTGCAAGCAGTGAATCGAGTTTGTCAACGACTCCAAGATCCTACCATCAAGGATTTCAAGACTGTAAAACGAATTCTTCGATATGTCCAAGGAACAGTGGATCATGGTATCACATTTTACAAACACAGTTCCACTAACTTATATGGTTTTTGTGATGCAGATTGGGGAGGTTGCCCTCTAACACGACGAAGCACAACTGGTTATTGTATTTTCCTCGGTTCCAACTGCATCTCCTGGTCGTCCAAGAAGCAACCAACAATTTCCCGATCAAGCTCCGAAGCTGAATATCGAGCCATGGCGATCTGCAAGTTGCCGCAGAATTAA

Coding sequence (CDS)

ATGTTGATTTATGTTGATGATATTATCCTTACAGGAAATGACATCTCCCACATCCAACAACTCATACACACGTTAAGCTGTGAGTTTGCATTAAAGGACCTAGGAGCACTTCACTACTTCCTCGACATTGAAGTCAAGCCCACATCCAAGGGGATAATATTGTGCCAAGGAAGATATGCTCGTGATCTCCTCTACAAGTCCAAGATGCTCGGTGCATCCTCTATGAGCACACCAATGGCGACATCCACGCAAGACCTACCCAATGATGATCAACCCACTGATGTTAAACAATATCGAAGTCTTGTAGGATCTCTTCAATACCTCACTTTCACTCGTCCTGACATAGTGCAAGCAGTGAATCGAGTTTGTCAACGACTCCAAGATCCTACCATCAAGGATTTCAAGACTGTAAAACGAATTCTTCGATATGTCCAAGGAACAGTGGATCATGGTATCACATTTTACAAACACAGTTCCACTAACTTATATGGTTTTTGTGATGCAGATTGGGGAGGTTGCCCTCTAACACGACGAAGCACAACTGGTTATTGTATTTTCCTCGGTTCCAACTGCATCTCCTGGTCGTCCAAGAAGCAACCAACAATTTCCCGATCAAGCTCCGAAGCTGAATATCGAGCCATGGCGATCTGCAAGTTGCCGCAGAATTAA

Protein sequence

MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYARDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVNRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRSTTGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMAICKLPQN

Homology

[Close]

BLAST of Tan0007691 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.4e-62
Identity = 112/216 (51.85%), Postives = 152/216 (70.37%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           +L+YVDDI+LTG+  + +  LI  LS  F++KDLG +HYFL I++K    G+ L Q +YA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
             +L  + ML    MSTP+        +  +  D   +RS+VG+LQYLT TRPDI  AVN
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
            VCQR+ +PT+ DF  +KR+LRYV+GT+ HG+  +K+S  N+  FCD+DW GC  TRRST
Sbjct: 123 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 182

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMAI 217
           TG+C FLG N ISWS+K+QPT+SRSS+E EYRA+A+
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 218

[Close]

BLAST of Tan0007691 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.0e-49
Identity = 104/216 (48.15%), Postives = 143/216 (66.20%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            ML+YVDDI++TGND   ++  +  LS  F++K+   LHYFL IE K   +G+ L Q RY 
Sbjct: 1130 MLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYT 1189

Query: 61   RDLLYKSKMLGASSMSTPMATSTQ-DLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAV 120
             DLL ++ ML A  ++TPMATS +  L +  +  D  +YR +VGSLQYL FTRPD+  AV
Sbjct: 1190 LDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAV 1249

Query: 121  NRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRS 180
            NR+ Q +  PT   +  +KR+LRY+ GT DHGI   K ++ +L+ + DADW G      S
Sbjct: 1250 NRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVS 1309

Query: 181  TTGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
            T GY ++LG + ISWSSKKQ  + RSS+EAEYR++A
Sbjct: 1310 TNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVA 1345

[Close]

BLAST of Tan0007691 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.5e-49
Identity = 105/216 (48.61%), Postives = 143/216 (66.20%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            ML+YVDDI++TGND + +   +  LS  F++KD   LHYFL IE K    G+ L Q RY 
Sbjct: 1147 MLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYI 1206

Query: 61   RDLLYKSKMLGASSMSTPMATSTQ-DLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAV 120
             DLL ++ M+ A  ++TPMA S +  L +  + TD  +YR +VGSLQYL FTRPDI  AV
Sbjct: 1207 LDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAV 1266

Query: 121  NRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRS 180
            NR+ Q +  PT +  + +KRILRY+ GT +HGI   K ++ +L+ + DADW G      S
Sbjct: 1267 NRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVS 1326

Query: 181  TTGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
            T GY ++LG + ISWSSKKQ  + RSS+EAEYR++A
Sbjct: 1327 TNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVA 1362

[Close]

BLAST of Tan0007691 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 71/219 (32.42%), Postives = 125/219 (57.08%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            +L+YVDD+++   D++ +      L  +F + DL  + +F+ I ++     I L Q  Y 
Sbjct: 1084 VLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYV 1143

Query: 61   RDLLYKSKMLGASSMSTPMATS-TQDLPNDDQPTDVKQYRSLVGSLQYLTF-TRPDIVQA 120
            + +L K  M   +++STP+ +    +L N D+  +    RSL+G L Y+   TRPD+  A
Sbjct: 1144 KKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNT-PCRSLIGCLMYIMLCTRPDLTTA 1203

Query: 121  VNRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSS--TNLYGFCDADWGGCPLT 180
            VN + +       + ++ +KR+LRY++GT+D  + F K+ +    + G+ D+DW G  + 
Sbjct: 1204 VNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEID 1263

Query: 181  RRSTTGYCI-FLGSNCISWSSKKQPTISRSSSEAEYRAM 215
            R+STTGY       N I W++K+Q +++ SS+EAEY A+
Sbjct: 1264 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMAL 1301

[Close]

BLAST of Tan0007691 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.8e-26
Identity = 83/224 (37.05%), Postives = 121/224 (54.02%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEV--KPTSKGIILCQGR 60
            +L+YVDD+++ G D   I +L   LS  F +KDLG     L +++  + TS+ + L Q +
Sbjct: 1005 LLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEK 1064

Query: 61   YARDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQ--------YRSLVGSLQY-LT 120
            Y   +L +  M  A  +STP+A   + L     PT V++        Y S VGSL Y + 
Sbjct: 1065 YIERVLERFNMKNAKPVSTPLAGHLK-LSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMV 1124

Query: 121  FTRPDIVQAVNRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDAD 180
             TRPDI  AV  V + L++P  + ++ VK ILRY++GT    + F   S   L G+ DAD
Sbjct: 1125 CTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPILKGYTDAD 1184

Query: 181  WGGCPLTRRSTTGYCIFLGSNCISWSSKKQPTISRSSSEAEYRA 214
              G    R+S+TGY        ISW SK Q  ++ S++EAEY A
Sbjct: 1185 MAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIA 1226

[Close]

BLAST of Tan0007691 vs. NCBI nr
Match: XP_022139305.1 (uncharacterized protein LOC111010253 isoform X1 [Momordica charantia])

HSP 1 Score: 292.0 bits (746), Expect = 4.4e-75
Identity = 141/215 (65.58%), Postives = 171/215 (79.53%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           ML+YVDDII+TG+    I++L+  L  EF+LKDLG LHYFL IEV  T+ G++L QG+YA
Sbjct: 1   MLVYVDDIIMTGSSSKPIEELMSQLGSEFSLKDLGPLHYFLGIEVHQTNTGLMLSQGKYA 60

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
           +++L K++ML AS +STPM+TST    ND++  D  QYRSLVGSLQYLT TRPDI  AVN
Sbjct: 61  KEILNKARMLEASQLSTPMSTSTSSSSNDNEIIDATQYRSLVGSLQYLTLTRPDITFAVN 120

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
           + CQ L DP  KD   VK ILRY++GT+ +GI+FYK+SS NLY FCDADWGGCP TRRST
Sbjct: 121 KACQHLHDPKQKDLNMVKHILRYLKGTLRYGISFYKNSSLNLYAFCDADWGGCPDTRRST 180

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           +G CIFLGSNCI WSSKKQ T++RSSSEAEYRAMA
Sbjct: 181 SGCCIFLGSNCIFWSSKKQTTVARSSSEAEYRAMA 215

[Close]

BLAST of Tan0007691 vs. NCBI nr
Match: XP_022141787.1 (uncharacterized protein LOC111012071 [Momordica charantia])

HSP 1 Score: 288.1 bits (736), Expect = 6.4e-74
Identity = 145/215 (67.44%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           MLIYVDDIIL G +   +Q LI  L  EFALKDLGALHYFLDIEV  T +G +L Q +Y 
Sbjct: 67  MLIYVDDIILIGTNAIIMQHLITKLGLEFALKDLGALHYFLDIEVHSTPQGRMLTQSKYT 126

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
           +D+L K+ ML AS   T MA S+   PND    D   YRS+VGSLQYLT TRPDIV AVN
Sbjct: 127 KDVLLKANMLYASHF-TLMALSSTSSPNDGDLVDATTYRSIVGSLQYLTLTRPDIVYAVN 186

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
           +VCQ +Q  TI +F+ VKRILRY++GT+ HGITF+K+S+ NLY FCDADWGGCP TRRST
Sbjct: 187 KVCQHMQTTTINNFRDVKRILRYLKGTLSHGITFHKNSNLNLYAFCDADWGGCPSTRRST 246

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           TGYCIFL +NCISWSSKKQPTI+RSS+EAEYRAMA
Sbjct: 247 TGYCIFLEANCISWSSKKQPTIARSSTEAEYRAMA 280

[Close]

BLAST of Tan0007691 vs. NCBI nr
Match: RVX04589.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-72
Identity = 137/215 (63.72%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           +LIYVDDII+TGND + I  LI+TLS EF+LKDLG+LHYFL +EVK    G+ + Q +Y 
Sbjct: 709 LLIYVDDIIVTGNDNNIISDLINTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYI 768

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
           RDLL  +KM+  + ++TPMA  +     D+QP D  QYR LVGSLQYLTFTRPDIV AVN
Sbjct: 769 RDLLEHTKMMECTPINTPMALKSIITSFDEQPIDPTQYRQLVGSLQYLTFTRPDIVHAVN 828

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
           + CQ  Q PT  D + VKRILRY++GT++HGI F+K SS  L GFCDADW GC  TRRST
Sbjct: 829 KACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRLTGFCDADWAGCTNTRRST 888

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           +GYCIFLG+NCISWSSK+QPT+SRSS+EAEYR++A
Sbjct: 889 SGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLA 923

[Close]

BLAST of Tan0007691 vs. NCBI nr
Match: RVX04530.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 283.1 bits (723), Expect = 2.1e-72
Identity = 137/215 (63.72%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            +LIYVDDII+TGND + I  LI TLS EF+LKDLG+LHYFL +EVK    G+ + Q +Y 
Sbjct: 924  LLIYVDDIIVTGNDNNIISDLISTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYI 983

Query: 61   RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
            RDLL  +KM+  + ++TPMA  +     D+QP D  QYR LVGSLQYLTFTRPDIV AVN
Sbjct: 984  RDLLEHTKMMECTPINTPMALKSIITSFDEQPIDPTQYRQLVGSLQYLTFTRPDIVHAVN 1043

Query: 121  RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
            + CQ  Q PT  D + VKRILRY++GT++HGI F+K SS  L GFCDADW GC  TRRST
Sbjct: 1044 KACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRLTGFCDADWAGCTNTRRST 1103

Query: 181  TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
            +GYCIFLG+NCISWSSK+QPT+SRSS+EAEYR++A
Sbjct: 1104 SGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLA 1138

[Close]

BLAST of Tan0007691 vs. NCBI nr
Match: RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 283.1 bits (723), Expect = 2.1e-72
Identity = 137/215 (63.72%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            +LIYVDDII+TGND + I  LI TLS EF+LKDLG+LHYFL +EVK    G+ + Q +Y 
Sbjct: 1124 LLIYVDDIIVTGNDNNIISDLISTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYI 1183

Query: 61   RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
            RDLL  +KM+  + ++TPMA  +     D+QP D  QYR LVGSLQYLTFTRPDIV AVN
Sbjct: 1184 RDLLEHTKMMECTPINTPMALKSIITSFDEQPIDPTQYRQLVGSLQYLTFTRPDIVHAVN 1243

Query: 121  RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
            + CQ  Q PT  D + VKRILRY++GT++HGI F+K SS  L GFCDADW GC  TRRST
Sbjct: 1244 KACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRLTGFCDADWAGCTNTRRST 1303

Query: 181  TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
            +GYCIFLG+NCISWSSK+QPT+SRSS+EAEYR++A
Sbjct: 1304 SGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLA 1338

[Close]

BLAST of Tan0007691 vs. ExPASy TrEMBL
Match: A0A6J1CBZ1 (uncharacterized protein LOC111010253 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010253 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.1e-75
Identity = 141/215 (65.58%), Postives = 171/215 (79.53%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           ML+YVDDII+TG+    I++L+  L  EF+LKDLG LHYFL IEV  T+ G++L QG+YA
Sbjct: 1   MLVYVDDIIMTGSSSKPIEELMSQLGSEFSLKDLGPLHYFLGIEVHQTNTGLMLSQGKYA 60

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
           +++L K++ML AS +STPM+TST    ND++  D  QYRSLVGSLQYLT TRPDI  AVN
Sbjct: 61  KEILNKARMLEASQLSTPMSTSTSSSSNDNEIIDATQYRSLVGSLQYLTLTRPDITFAVN 120

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
           + CQ L DP  KD   VK ILRY++GT+ +GI+FYK+SS NLY FCDADWGGCP TRRST
Sbjct: 121 KACQHLHDPKQKDLNMVKHILRYLKGTLRYGISFYKNSSLNLYAFCDADWGGCPDTRRST 180

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           +G CIFLGSNCI WSSKKQ T++RSSSEAEYRAMA
Sbjct: 181 SGCCIFLGSNCIFWSSKKQTTVARSSSEAEYRAMA 215

[Close]

BLAST of Tan0007691 vs. ExPASy TrEMBL
Match: A0A6J1CKU6 (uncharacterized protein LOC111012071 OS=Momordica charantia OX=3673 GN=LOC111012071 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.1e-74
Identity = 145/215 (67.44%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           MLIYVDDIIL G +   +Q LI  L  EFALKDLGALHYFLDIEV  T +G +L Q +Y 
Sbjct: 67  MLIYVDDIILIGTNAIIMQHLITKLGLEFALKDLGALHYFLDIEVHSTPQGRMLTQSKYT 126

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
           +D+L K+ ML AS   T MA S+   PND    D   YRS+VGSLQYLT TRPDIV AVN
Sbjct: 127 KDVLLKANMLYASHF-TLMALSSTSSPNDGDLVDATTYRSIVGSLQYLTLTRPDIVYAVN 186

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
           +VCQ +Q  TI +F+ VKRILRY++GT+ HGITF+K+S+ NLY FCDADWGGCP TRRST
Sbjct: 187 KVCQHMQTTTINNFRDVKRILRYLKGTLSHGITFHKNSNLNLYAFCDADWGGCPSTRRST 246

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           TGYCIFL +NCISWSSKKQPTI+RSS+EAEYRAMA
Sbjct: 247 TGYCIFLEANCISWSSKKQPTIARSSTEAEYRAMA 280

[Close]

BLAST of Tan0007691 vs. ExPASy TrEMBL
Match: A0A438J6K3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_103 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.9e-73
Identity = 137/215 (63.72%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           +LIYVDDII+TGND + I  LI+TLS EF+LKDLG+LHYFL +EVK    G+ + Q +Y 
Sbjct: 709 LLIYVDDIIVTGNDNNIISDLINTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYI 768

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
           RDLL  +KM+  + ++TPMA  +     D+QP D  QYR LVGSLQYLTFTRPDIV AVN
Sbjct: 769 RDLLEHTKMMECTPINTPMALKSIITSFDEQPIDPTQYRQLVGSLQYLTFTRPDIVHAVN 828

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
           + CQ  Q PT  D + VKRILRY++GT++HGI F+K SS  L GFCDADW GC  TRRST
Sbjct: 829 KACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRLTGFCDADWAGCTNTRRST 888

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           +GYCIFLG+NCISWSSK+QPT+SRSS+EAEYR++A
Sbjct: 889 SGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLA 923

[Close]

BLAST of Tan0007691 vs. ExPASy TrEMBL
Match: A0A438J6E1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3094 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.0e-72
Identity = 137/215 (63.72%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            +LIYVDDII+TGND + I  LI TLS EF+LKDLG+LHYFL +EVK    G+ + Q +Y 
Sbjct: 924  LLIYVDDIIVTGNDNNIISDLISTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYI 983

Query: 61   RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
            RDLL  +KM+  + ++TPMA  +     D+QP D  QYR LVGSLQYLTFTRPDIV AVN
Sbjct: 984  RDLLEHTKMMECTPINTPMALKSIITSFDEQPIDPTQYRQLVGSLQYLTFTRPDIVHAVN 1043

Query: 121  RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
            + CQ  Q PT  D + VKRILRY++GT++HGI F+K SS  L GFCDADW GC  TRRST
Sbjct: 1044 KACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRLTGFCDADWAGCTNTRRST 1103

Query: 181  TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
            +GYCIFLG+NCISWSSK+QPT+SRSS+EAEYR++A
Sbjct: 1104 SGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLA 1138

[Close]

BLAST of Tan0007691 vs. ExPASy TrEMBL
Match: A0A438E6Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1575 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.0e-72
Identity = 137/215 (63.72%), Postives = 167/215 (77.67%), Query Frame = 0


Query: 1    MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
            +LIYVDDII+TGND + I  LI TLS EF+LKDLG+LHYFL +EVK    G+ + Q +Y 
Sbjct: 1124 LLIYVDDIIVTGNDNNIISDLISTLSSEFSLKDLGSLHYFLGLEVKYLPNGLFVSQTKYI 1183

Query: 61   RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
            RDLL  +KM+  + ++TPMA  +     D+QP D  QYR LVGSLQYLTFTRPDIV AVN
Sbjct: 1184 RDLLEHTKMMECTPINTPMALKSIITSFDEQPIDPTQYRQLVGSLQYLTFTRPDIVHAVN 1243

Query: 121  RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
            + CQ  Q PT  D + VKRILRY++GT++HGI F+K SS  L GFCDADW GC  TRRST
Sbjct: 1244 KACQHFQAPTKADLRAVKRILRYLKGTMEHGIRFFKQSSLRLTGFCDADWAGCTNTRRST 1303

Query: 181  TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
            +GYCIFLG+NCISWSSK+QPT+SRSS+EAEYR++A
Sbjct: 1304 SGYCIFLGANCISWSSKRQPTVSRSSAEAEYRSLA 1338

[Close]

BLAST of Tan0007691 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-63
Identity = 112/216 (51.85%), Postives = 152/216 (70.37%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           +L+YVDDI+LTG+  + +  LI  LS  F++KDLG +HYFL I++K    G+ L Q +YA
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 61  RDLLYKSKMLGASSMSTPMATSTQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAVN 120
             +L  + ML    MSTP+        +  +  D   +RS+VG+LQYLT TRPDI  AVN
Sbjct: 63  EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVN 122

Query: 121 RVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRST 180
            VCQR+ +PT+ DF  +KR+LRYV+GT+ HG+  +K+S  N+  FCD+DW GC  TRRST
Sbjct: 123 IVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRST 182

Query: 181 TGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMAI 217
           TG+C FLG N ISWS+K+QPT+SRSS+E EYRA+A+
Sbjct: 183 TGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 218

[Close]

BLAST of Tan0007691 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 176.0 bits (445), Expect = 3.3e-44
Identity = 94/216 (43.52%), Postives = 133/216 (61.57%), Query Frame = 0


Query: 1   MLIYVDDIILTGNDISHIQQLIHTLSCEFALKDLGALHYFLDIEVKPTSKGIILCQGRYA 60
           +L+YVDDII+  N+ + + +L   L   F L+DLG L YFL +E+  ++ GI +CQ +YA
Sbjct: 280 VLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYA 339

Query: 61  RDLLYKSKMLGASSMSTPMATS-TQDLPNDDQPTDVKQYRSLVGSLQYLTFTRPDIVQAV 120
            DLL ++ +LG    S PM  S T    +     D K YR L+G L YL  TR DI  AV
Sbjct: 340 LDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAV 399

Query: 121 NRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFCDADWGGCPLTRRS 180
           N++ Q  + P +   + V +IL Y++GTV  G+ +   +   L  F DA +  C  TRRS
Sbjct: 400 NKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRS 459

Query: 181 TTGYCIFLGSNCISWSSKKQPTISRSSSEAEYRAMA 216
           T GYC+FLG++ ISW SKKQ  +S+SS+EAEYRA++
Sbjct: 460 TNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALS 495

[Close]

BLAST of Tan0007691 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-14
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 107 YLTFTRPDIVQAVNRVCQRLQDPTIKDFKTVKRILRYVQGTVDHGITFYKHSSTNLYGFC 166
           YLT TRPD+  AVNR+ Q          + V ++L YV+GTV  G+ +   S   L  F 
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61

Query: 167 DADWGGCPLTRRSTTGYC 185
           D+DW  CP TRRS TG+C
Sbjct: 62  DSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Tan0007691 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	3.4e-62	51.85	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	2.0e-49	48.15	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.5e-49	48.61	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.1e-28	32.42	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	6.8e-26	37.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Tan0007691 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139305.1	4.4e-75	65.58	uncharacterized protein LOC111010253 isoform X1 [Momordica charantia]	[more]
XP_022141787.1	6.4e-74	67.44	uncharacterized protein LOC111012071 [Momordica charantia]	[more]
RVX04589.1	1.2e-72	63.72	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVX04530.1	2.1e-72	63.72	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW43526.1	2.1e-72	63.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Tan0007691 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CBZ1	2.1e-75	65.58	uncharacterized protein LOC111010253 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CKU6	3.1e-74	67.44	uncharacterized protein LOC111012071 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A438J6K3	5.9e-73	63.72	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438J6E1	1.0e-72	63.72	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E6Z5	1.0e-72	63.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Tan0007691 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.4e-63	51.85	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.3e-44	43.52	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	3.6e-14	44.87	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 3..79 e-value: 1.0E-13 score: 51.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 19..215
None	No IPR available	PANTHER	PTHR11439:SF268	ATP-DEPENDENT DNA HELICASE	coord: 19..215
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 163..217 e-value: 9.97701E-33 score: 113.717
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007691.1	Tan0007691.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050896	response to stimulus
molecular_function	GO:0005488	binding