Tan0007453 (gene) Snake gourd v1

Overview
NameTan0007453
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG11: 3042623 .. 3042955 (-)
RNA-Seq ExpressionTan0007453
SyntenyTan0007453
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCTACTGAAAACAGAGTTTTTGATTGGTTTTATTTCAAAGCTTTACTCGTTCGTTTTGGCCTCTCTGCATGTGCGAGCTGAAGATTGGCTATTGGTTCCAGCAAGTCGCCCCCACGTTTTGTAAAATCACCCCCACTATTATCAGCAAAAGATATTTCTGGGGTTACCGAGTGGACTTGAGAGATTCCAATTTCGACCTTATGACTTGGTCGCCGGAGGGAAATTTCATCGTTTCAGCAAGAGGTACGAGCTCTGTTTTTCAGTTTCAGCTCGTTTACTGATGTGGGGTTGCTGCATTTTGTCGATTTCAGCATTGGGGGTTTTCTAG

mRNA sequence

ATGATCCTACTGAAAACAGAGTTTTTGATTGGTTTTATTTCAAAGCTTTACTCGTTCGTTTTGGCCTCTCTGCATGTGCGAGCTGAAGATTGGCTATTGGTTCCAGCAAGTCGCCCCCACCAAAAGATATTTCTGGGGTTACCGAGTGGACTTGAGAGATTCCAATTTCGACCTTATGACTTGGTCGCCGGAGGGAAATTTCATCGTTTCAGCAAGAGGTACGAGCTCTGTTTTTCAGTTTCAGCTCGTTTACTGATGTGGGGTTGCTGCATTTTGTCGATTTCAGCATTGGGGGTTTTCTAG

Coding sequence (CDS)

ATGATCCTACTGAAAACAGAGTTTTTGATTGGTTTTATTTCAAAGCTTTACTCGTTCGTTTTGGCCTCTCTGCATGTGCGAGCTGAAGATTGGCTATTGGTTCCAGCAAGTCGCCCCCACCAAAAGATATTTCTGGGGTTACCGAGTGGACTTGAGAGATTCCAATTTCGACCTTATGACTTGGTCGCCGGAGGGAAATTTCATCGTTTCAGCAAGAGGTACGAGCTCTGTTTTTCAGTTTCAGCTCGTTTACTGATGTGGGGTTGCTGCATTTTGTCGATTTCAGCATTGGGGGTTTTCTAG

Protein sequence

MILLKTEFLIGFISKLYSFVLASLHVRAEDWLLVPASRPHQKIFLGLPSGLERFQFRPYDLVAGGKFHRFSKRYELCFSVSARLLMWGCCILSISALGVF
Homology
[Close]
BLAST of Tan0007453 vs. NCBI nr
Match: KGN52561.1 (hypothetical protein Csa_009198 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-14
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 29  EDWLLVPA-----SRP---HQKIFLGLPSGLERFQFRPYDLVAGGKFHRFSKRYELCFSV 88
           EDWL   A     + P   H++IFLGLPSGL+RF FR   L    K+HR S+RYELCFSV
Sbjct: 6   EDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYELCFSV 65

Query: 89  SARLLMWGCCILSISALGVF 101
           SA LLMWGC ILSI+A G+F
Sbjct: 66  SAHLLMWGCHILSITAFGLF 85

[Close]
BLAST of Tan0007453 vs. ExPASy TrEMBL
Match: A0A0A0KXP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643890 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 29  EDWLLVPA-----SRP---HQKIFLGLPSGLERFQFRPYDLVAGGKFHRFSKRYELCFSV 88
           EDWL   A     + P   H++IFLGLPSGL+RF FR   L    K+HR S+RYELCFSV
Sbjct: 6   EDWLQQVAPTFCKTAPTIIHRRIFLGLPSGLQRFHFRLSGLGHRRKYHRLSERYELCFSV 65

Query: 89  SARLLMWGCCILSISALGVF 101
           SA LLMWGC ILSI+A G+F
Sbjct: 66  SAHLLMWGCHILSITAFGLF 85

The following BLAST results are available for this feature:
BLAST of Tan0007453 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0007453 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52561.13.4e-1460.00hypothetical protein Csa_009198 [Cucumis sativus][more]
BLAST of Tan0007453 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXP01.6e-1460.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643890 PE=4 SV=1[more]
BLAST of Tan0007453 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007453.1Tan0007453.1mRNA