Tan0007450 (gene) Snake gourd v1

Overview
NameTan0007450
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 3636172 .. 3636501 (-)
RNA-Seq ExpressionTan0007450
SyntenyTan0007450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTTTTCTGTTATGAAGACGACGGCAGCGTTTGTTCTCACTTTTCTCTGTCTTTTCCACGTGTCGGTGGCCAGGGTCTTGACCGGAGAGCGGTGGCTGTCGAGGCCGCTGTCCATGTCCATGGCGATGCTGCGAGCTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGACTCGGCCGCGGTCGCTGCACGCTGAGTGAGGTGGAAGACGGCGGCTCCTCCGCCTTCCCTGGCATGAATGTTGATGGGTTTGCGGCGGCTTCCATGGTTAATGAAACCCAGAAGCAAAATGTAGATAGATCTCACAATTTATAA

mRNA sequence

ATGGTTTTTTCTGTTATGAAGACGACGGCAGCGTTTGTTCTCACTTTTCTCTGTCTTTTCCACGTGTCGGTGGCCAGGGTCTTGACCGGAGAGCGGTGGCTGTCGAGGCCGCTGTCCATGTCCATGGCGATGCTGCGAGCTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGACTCGGCCGCGGTCGCTGCACGCTGAGTGAGGTGGAAGACGGCGGCTCCTCCGCCTTCCCTGGCATGAATGTTGATGGGTTTGCGGCGGCTTCCATGGTTAATGAAACCCAGAAGCAAAATGTAGATAGATCTCACAATTTATAA

Coding sequence (CDS)

ATGGTTTTTTCTGTTATGAAGACGACGGCAGCGTTTGTTCTCACTTTTCTCTGTCTTTTCCACGTGTCGGTGGCCAGGGTCTTGACCGGAGAGCGGTGGCTGTCGAGGCCGCTGTCCATGTCCATGGCGATGCTGCGAGCTCCGGTGCCTCCTTCCGGTAGGAATCCCTGTTCGTTTATTCCCGGACTCGGCCGCGGTCGCTGCACGCTGAGTGAGGTGGAAGACGGCGGCTCCTCCGCCTTCCCTGGCATGAATGTTGATGGGTTTGCGGCGGCTTCCATGGTTAATGAAACCCAGAAGCAAAATGTAGATAGATCTCACAATTTATAA

Protein sequence

MVFSVMKTTAAFVLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFIPGLGRGRCTLSEVEDGGSSAFPGMNVDGFAAASMVNETQKQNVDRSHNL
Homology
BLAST of Tan0007450 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.4 bits (355), Expect = 4.8e-30
Identity = 81/111 (72.97%), Postives = 86/111 (77.48%), Query Frame = 0

Query: 1   MVFSVMKT-TAAFVLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSF 60
           M FSVMKT  AAFV   LC+FHVS ARVLTGERW  RP  +S  MLR  VPPSGRNPCSF
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERW--RP--VSDRMLRGLVPPSGRNPCSF 60

Query: 61  IPGLGRGRCTLSEVED--------GGSSAFPGMNVDGFAAASMVNETQKQN 103
           IPGLGRGRCTLSEVED        GGSSAFPGMN DGF+AA+MVN TQKQ+
Sbjct: 61  IPGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQD 107

BLAST of Tan0007450 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-25
Identity = 69/112 (61.61%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 1   MVFSVMKTTAAFVLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFI 60
           M FS+MK T AF+  FL +  +S ARVL GERWL   + +  AMLR PVP S RNPCSFI
Sbjct: 1   MAFSLMK-TVAFLFIFLSIVDMSAARVLNGERWLPGSM-VPFAMLRGPVPSSSRNPCSFI 60

Query: 61  PGLGRGRCTLSEVED------GGSSAFPGMNVDGFAAASMVNETQKQNVDRS 107
           PG  RGRCTLSEV++      GGSSAFPG+N DGFAAAS+VN+TQKQ+   S
Sbjct: 61  PGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMS 110

BLAST of Tan0007450 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 1   MVFSVMKTTAAFVLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFI 60
           M FS++K T AF+  FL +F VSV R L G R       + +A+LR PVP S RNPCSFI
Sbjct: 1   MAFSLVK-TVAFLFIFLSIFDVSVGRWLPGSR-------VPIAVLRGPVPSSSRNPCSFI 60

Query: 61  PGLGRGRCTLSEVED------GGSSAFPGMNVDGFAAASMVNETQKQN 103
           PG  RGRCTLSEV+D      GGSSAFPG+N DGFAAASMVN+TQKQ+
Sbjct: 61  PGFSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQD 100

BLAST of Tan0007450 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-20
Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 0

Query: 22  VSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFIPGLGRGRCTLSEVED------ 81
           +S ARV+TGERWL  P  + MAMLR  VP S RNPCSFIPG  RGRCTLSE +D      
Sbjct: 1   MSAARVMTGERWLPAP-RVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVH 60

Query: 82  GGSSAFPGMNVDGFAAASMVNETQKQN 103
           GGSSA  G+N DGFAAASM N+TQK++
Sbjct: 61  GGSSALSGLNADGFAAASMANKTQKKD 86

BLAST of Tan0007450 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 0

Query: 3   FSVMKTTAAFVLTFLCLFHVSVA--RVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFI 62
           F+ M   A  VL   C      A  R+L  E+WL++ L +  ++ R PVPPSG NPC+FI
Sbjct: 10  FTTMAKWAIAVLLVSCFLEQKTAAVRLLDEEQWLAKNL-IVQSLQRGPVPPSGGNPCTFI 69

Query: 63  PGLGRGRCTLSEVEDGG------SSAFPGMNVDGFAAA---SMVNETQKQN 103
           PG  RGRCTLSE++  G      ++AFP + VD  A     S  NETQKQ+
Sbjct: 70  PGRNRGRCTLSEMDVAGQFPRAPAAAFPDIVVDFGAVTAGNSGANETQKQD 119

BLAST of Tan0007450 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 69/112 (61.61%), Postives = 81/112 (72.32%), Query Frame = 0

Query: 1   MVFSVMKTTAAFVLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFI 60
           M FS+MK T AF+  FL +  +S ARVL GERWL   + +  AMLR PVP S RNPCSFI
Sbjct: 1   MAFSLMK-TVAFLFIFLSIVDMSAARVLNGERWLPGSM-VPFAMLRGPVPSSSRNPCSFI 60

Query: 61  PGLGRGRCTLSEVED------GGSSAFPGMNVDGFAAASMVNETQKQNVDRS 107
           PG  RGRCTLSEV++      GGSSAFPG+N DGFAAAS+VN+TQKQ+   S
Sbjct: 61  PGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMS 110

BLAST of Tan0007450 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 0

Query: 1   MVFSVMKTTAAFVLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFI 60
           M FS++K T AF+  FL +F VSV R L G R       + +A+LR PVP S RNPCSFI
Sbjct: 1   MAFSLVK-TVAFLFIFLSIFDVSVGRWLPGSR-------VPIAVLRGPVPSSSRNPCSFI 60

Query: 61  PGLGRGRCTLSEVED------GGSSAFPGMNVDGFAAASMVNETQKQN 103
           PG  RGRCTLSEV+D      GGSSAFPG+N DGFAAASMVN+TQKQ+
Sbjct: 61  PGFSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQD 100

BLAST of Tan0007450 vs. ExPASy TrEMBL
Match: A0A1Q3BFG1 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 13  VLTFLCLFHVSVARVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFIPGLGRGRCTLS- 72
           V   LC   +   R L GE+WL + + +  ++ R PV PSG NPC++IPG G GRCT   
Sbjct: 16  VTIVLCFQQILAMRPLEGEQWLEKRI-VVQSLQRGPVTPSGPNPCTYIPGRGTGRCTFEM 75

Query: 73  -----EVEDGGSSAFPGMNVDGFAAASMVNETQK 101
                +  D  S AFP   V   AA+S+ NETQK
Sbjct: 76  DAATHDTHDHESPAFPHPFVKFAAASSVANETQK 108

BLAST of Tan0007450 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 0

Query: 12  FVLTFLCLFHVS---VARVLTGERWLSRPLSMSMAML-RAPVPPSGRNPCSFIPGLGRGR 71
           FV T L LF        R L GE WL+   ++++  L R PV PSG NPC++IPG  RGR
Sbjct: 9   FVFTVLLLFGCRENLATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGGKRGR 68

Query: 72  CTLSEVEDGGSS--------AFPGMNVDGFAAASMVNETQKQN 103
           CTL+E E   S         AFPG+ V  FA AS  N+++KQ+
Sbjct: 69  CTLAENESNYSGRVGHAAPPAFPGVMVK-FAPASTANDSRKQD 110

BLAST of Tan0007450 vs. ExPASy TrEMBL
Match: A0A2N9F903 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.5e-08
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 0

Query: 12 FVLTFLCLFHVSVA-RVLTGERWLSRPLSMSMAMLRAPVPPSGRNPCSFIPGLGRGRCTL 71
          F++ F+  FH ++A R L GE WL++ L+M   + R PV PSG NPC++IPG   GRCTL
Sbjct: 4  FIMLFVLGFHEALAMRPLDGEPWLNKNLAM-QTLQRGPVTPSGPNPCTYIPGRSHGRCTL 63

Query: 72 SEVEDG-----GSSAFPGMNVDGFAAASMVN 97
          SE++          AFP  +V  FAAAS+ N
Sbjct: 64 SEMDVADHVAHAPPAFPD-HVVSFAAASIAN 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6586324.14.8e-3072.97hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60782.16.0e-2561.61hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.11.6e-2261.11hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.13.4e-2064.37hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.11.6e-0944.14uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
A0A0A0LJ842.9e-2561.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY27.9e-2361.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1Q3BFG11.5e-0842.55Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_10276 PE=4... [more]
A0A6A4KR041.5e-0844.66Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A2N9F9032.5e-0846.15Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 5..100
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 5..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007450.1Tan0007450.1mRNA