Tan0007366 (gene) Snake gourd v1

Overview


Name	Tan0007366
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	LG04: 3243351 .. 3246362 (+)
RNA-Seq Expression	Tan0007366
Synteny	Tan0007366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACACTGACGAAGGTCTTCGTCGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTGGAGGCGGTTATCATCTCCGATAAAGTCACCGGCAGATCCAAGGGCTATGGATTCGTAAGTCTCGAATTGATCATTCGGTCGTCGATGCGATTCGATTGGATTAGGATTTGAGTTTTGTGTGTTGTGTGCTGTGTTTCGATTTTTAATTAGGTTACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCCCTTGGAGCTCGGCGCGGCTCGAGGTCGGCTTCGGCTACTCCTCCGCTAGCTCCTCAGCCTGGTAATAAAATGACTCTTCTGACTTCTCTCTCTCTCTCTCTGTTGCATGATGAAAAGGAAAGAAACTGGTCAATTGACTGAATGGCATTTTCGTAATTGCGTTAAAGAAATTTGTATGTGAAAATTTTTTGACGGTGGAGATCTGAAGTTGGTTTTGTGATGGGGAATTGAAGGATCGAACGGCGGTGGGCCGAGGACGACGTCAGCAGCGTCCGGCAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCATCATCAGCCTCATCAGCAGGCCGTTCCTTTCTATGGGTATATCTTAATATCCTACGCCTTTTCCGTATCCTAATATTACCCATTTTTTATATTTTTTCCCCTTTTAAATTAACGTAAATTTCGTTTTCTTTTAGATACTCCCCAAGCCCCACCACTTACATCGCCACGGATATCAGTTACAACCACGTAAGCCTTTTTATTTTATGTTAAATTATCATTTTTGTATGATCATCATGCAAAATATTACCAAAAATTCTAAGGATCTCTTGGACTCTTTTTAATTTTTAGGATTTATTAGACAGATCAAACTTATAACATGACGAAAAAAAATTCATAATATAATTTTTAATTTTAAGAAGTAACAGATCTATTTGGTTAGTTATATTTTTGACAGTTATTTATTCTTTTGAAATAAGAAATATTTTTTCTCTCTCCTACATTACTCTCCTCTTATATTGTGAGGGACATAATGGTAGTAATGAGAGATATTACTAACCAACCTTAATTTAGAAGTTAACATGAATCTATATCTAAAAAAATTTCTAGTACTACCATAATATATAATTTTTTTTATATTACTCTCCTGGAATGTTTCTACGTCAACTTCTTTCTAAATATTATGTGGGGTCCACTAAAAATTATGTGAAATCTATTAATATCAAATATGGTACAAACCCAAAAATGTGTGGTTGATGAGTGGAGAACATAAACTTAGGTGTTGCTCGGTACTTAGTATGCCTATTCGATCTACGTATTTATTTATTGTACTAAGAAAAGTTAGCTAACATCTTAAGAGATTAGAAGTTAGAATTCAATGAAGATTTTGGCGATGGAACAGAAACTAGGGTACATGAACGGGCACTACACGCAGATGTATCCGGGGCAGGCTATGGTAGGGGCGAATGCATTGATGCCAATGTACCCGGTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCGAGTCCGACGGCGGCGGGTCCATTCACGGCGGTGCCACCGAGTTCTATTATGTCCAAACCGGCCTCCGTTGCTCCCAATCCAGGTCGGTTTTTCTCTTCTCTTCTCTTTTCTTCATTCATTTTGTTTAAACTTTTCACAATCACAGTCCGTTTTGCCCCTTTCTTCTTTTGGGTTGGGTTTTGTTTTGCCCATTGTTTTGCATGGTCCTAAAGAAAAAACCAAATACGGTCAATAGTCAAACGTTATTAACAAGAAAGAAAGAAAAAAAAAAAAAAACAGTAGCAAAAACCAGATCAGAGTCCTTCACGTGAAAGGGTAATTCCTCCCCCCACTGCCAACTGGCCTCCCTGGGTCCCACGTGGCCAGCTTGATCGGCCGGTCGTGCGGTGGTCTCTTGCTGTCCCTTTCCAGTTGTTAATATTCCATAATGTCGAGGACTCTCTTGCAAAAATCAACTACTTTTTTCTAGCTTTGTAAACGTTCAGTTTAAATACTATTTTCATTCATATACTTTTGAAAAATGATCCATTTGGTCTATTTATTTTCATTTTTTCTATGGTAATTTTGCAAACATTGATTACATTCGCCAAAATACAAGGACTAAAATCAACGTTTCGAAAACAAAATGAACCACAACCAAACATATAGAGACCAAAATGTAGAGACTAAGATAGACATTTTGGAGTAATTAAAATGGATCAAAAGTAAAAGGACATAAACTAAAATAGTATTAATTCCTAAATGTTGTGATATATGATCACGAAAATGGTTTCTCGAACTTGTTTTTACTACCCAACTTGAGCATGGTTATCTAATTACTAGATACATTTTCAATAAAGAGATTAGAGATTCACATAACCCCACCTCTACATGTAGTCAAACATGTTTTTACTAATTTTTTTTAACCACCACTAACAATTTACATGGTATGAGAGCAAAAAACAATCTTAGATTCAAATTCAAATTTCTATAATGGGGTTTTTTCCTCACTTTTCAAATCCTAATCCCTAATTCTGTTTAGAGTACAATTTGGGTTTAGTCCTCAACTCTTGTGCAGTCCAATTCAACCCCATAGAAGAATTTTTTTTTTATTATTATTATTAATTATGTGGTGTTGGAGTGGACTGTATAAGACTTGGGTGCGGCCTGAATTTTTTCCTTCTGTTCATATGATGGAATTTGTGAGGTAGATAATAATGTTGATATAAATAGAGCTAGTGAGATTTGAGATGGATTAGAAAGATGATAATTAAACTGATATTACAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTACAGTTGGAGGAGGATTCAGGGGAAGATGA

mRNA sequence

ATGACTATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACACTGACGAAGGTCTTCGTCGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTGGAGGCGGTTATCATCTCCGATAAAGTCACCGGCAGATCCAAGGGCTATGGATTCGTTACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCCCTTGGAGCTCGGCGCGGCTCGAGGTCGGCTTCGGCTACTCCTCCGCTAGCTCCTCAGCCTGGATCGAACGGCGGTGGGCCGAGGACGACGTCAGCAGCGTCCGGCAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCATCATCAGCCTCATCAGCAGGCCGTTCCTTTCTATGGATACTCCCCAAGCCCCACCACTTACATCGCCACGGATATCAGTTACAACCACAAACTAGGGTACATGAACGGGCACTACACGCAGATGTATCCGGGGCAGGCTATGGTAGGGGCGAATGCATTGATGCCAATGTACCCGGTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCGAGTCCGACGGCGGCGGGTCCATTCACGGCGGTGCCACCGAGTTCTATTATGTCCAAACCGGCCTCCGTTGCTCCCAATCCAGGTACAGTTGGAGGAGGATTCAGGGGAAGATGA

Coding sequence (CDS)

ATGACTATGATGAGCAACAATGCAGGTCTGTTCGGCGACACGACACTGACGAAGGTCTTCGTCGGAGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGCGAGATCCTGGAGGCGGTTATCATCTCCGATAAAGTCACCGGCAGATCCAAGGGCTATGGATTCGTTACGTTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTGGCTTCCCTTGGAGCTCGGCGCGGCTCGAGGTCGGCTTCGGCTACTCCTCCGCTAGCTCCTCAGCCTGGATCGAACGGCGGTGGGCCGAGGACGACGTCAGCAGCGTCCGGCAACCACGTGCAGTGGTACTACCCGGCGGGGACTCATCCGACGCCGTTTCATCATCAGCCTCATCAGCAGGCCGTTCCTTTCTATGGATACTCCCCAAGCCCCACCACTTACATCGCCACGGATATCAGTTACAACCACAAACTAGGGTACATGAACGGGCACTACACGCAGATGTATCCGGGGCAGGCTATGGTAGGGGCGAATGCATTGATGCCAATGTACCCGGTGTATCATTACCATCAATCACACGCGATGGGGATGCCGGCCCACATATTCCCTCCGAGTCCGACGGCGGCGGGTCCATTCACGGCGGTGCCACCGAGTTCTATTATGTCCAAACCGGCCTCCGTTGCTCCCAATCCAGGTACAGTTGGAGGAGGATTCAGGGGAAGATGA

Protein sequence

MTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGPRTTSAASGNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNGHYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSKPASVAPNPGTVGGGFRGR

Homology

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BLAST of Tan0007366 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 4.1e-59
Identity = 141/280 (50.36%), Postives = 168/280 (60.00%), Query Frame = 0


Query: 1   MTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGY 60
           MT  +N  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDK+T RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 61  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGP 120
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R        +P   P+ G+     
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGN----- 120

Query: 121 RTTSAASGNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLG--- 180
           R T    GNH QWYYP+G      H Q + QAVPFYGY   P+ Y+A ++++N K+G   
Sbjct: 121 RATPPHVGNHSQWYYPSG-FTNQQHQQQNHQAVPFYGY---PSAYVAPNMTFNQKVGYVG 180

Query: 181 --YMNGHYTQMYP------------------GQAMVG-ANALMPMYPVYHYHQSHAMGMP 240
             YMNG+Y QM P                  G+ MVG A+ ++P Y VY YHQS A+G P
Sbjct: 181 GTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFP 240

Query: 241 AHIFPPSPTAAGPFTAVPPSSIMSKPASVAPNP--GTVGG 255
              F                   SKP S +  P  GTVGG
Sbjct: 241 QPSF-------------------SKPLSFSTPPISGTVGG 252

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BLAST of Tan0007366 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Tan0007366 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Tan0007366 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Tan0007366 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 13 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAESAK 72
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73 KACEDSAPIINGRRANCNLASLGAR 98
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Tan0007366 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida])

HSP 1 Score: 477.2 bits (1227), Expect = 8.7e-131
Identity = 245/268 (91.42%), Postives = 248/268 (92.54%), Query Frame = 0


Query: 1   MTMMS-------NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKV 60
           MTMMS       NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDK+
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTSAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDI 180
           PGSNGGGPRTTSA +  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDI
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 TAVPPSSIMSKPASVAPNPGTVGGGFRG 259
            AVPPSSIMSKPASV PNPGTVGGG RG
Sbjct: 241 AAVPPSSIMSKPASVGPNPGTVGGGCRG 266

[Close]

BLAST of Tan0007366 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 233/253 (92.09%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 5   SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVT 64
           S NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDK+TGRSKGYGFVT
Sbjct: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73

Query: 65  FKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQPGSNGGGPRTT 124
           FKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQPGSN GGPRTT
Sbjct: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133

Query: 125 SAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 184
           SAA+  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDISYNHKLGYMNG
Sbjct: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDISYNHKLGYMNG 193

Query: 185 HYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSK 244
           HYTQMYPGQAMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF AVPP+SIMSK
Sbjct: 194 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 253

Query: 245 PASVAPNPGTVGG 255
           P +V PNPGTVGG
Sbjct: 254 PTTVGPNPGTVGG 264

[Close]

BLAST of Tan0007366 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida])

HSP 1 Score: 462.6 bits (1189), Expect = 2.2e-126
Identity = 237/259 (91.51%), Postives = 240/259 (92.66%), Query Frame = 0


Query: 1   MTMMS-------NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKV 60
           MTMMS       NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDK+
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTSAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDI 180
           PGSNGGGPRTTSA +  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDI
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDI 180

Query: 181 SYNHKLGYMNGHYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPF 240
           SYNHKLGYMNGHYTQMYPGQAMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 TAVPPSSIMSKPASVAPNP 250
            AVPPSSIMSKPASV PNP
Sbjct: 241 AAVPPSSIMSKPASVGPNP 257

[Close]

BLAST of Tan0007366 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 458.0 bits (1177), Expect = 5.5e-125
Identity = 235/264 (89.02%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDK+T
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDIS 180
           GSNGGGPRTT+AA+  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDIS
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDIS 180

Query: 181 YNHKLGYMNGHYTQMYPGQ-AMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPF 240
           YNHKLGY+NGHYTQMYPGQ AMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF
Sbjct: 181 YNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 TAVPPSSIMSKPASVAPNPGTVGG 255
            AVPP+SIMSKP +V PNPGTVGG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPGTVGG 262

[Close]

BLAST of Tan0007366 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 1.0e-123
Identity = 228/248 (91.94%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 5   SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVT 64
           S NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDK+TGRSKGYGFVT
Sbjct: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73

Query: 65  FKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQPGSNGGGPRTT 124
           FKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQPGSN GGPRTT
Sbjct: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133

Query: 125 SAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 184
           SAA+  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDISYNHKLGYMNG
Sbjct: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDISYNHKLGYMNG 193

Query: 185 HYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSK 244
           HYTQMYPGQAMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF AVPP+SIMSK
Sbjct: 194 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 253

Query: 245 PASVAPNP 250
           P +V PNP
Sbjct: 254 PTTVGPNP 259

[Close]

BLAST of Tan0007366 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.2e-127
Identity = 233/253 (92.09%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 5   SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVT 64
           S NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDK+TGRSKGYGFVT
Sbjct: 14  STNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFVT 73

Query: 65  FKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQPGSNGGGPRTT 124
           FKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQPGSN GGPRTT
Sbjct: 74  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRTT 133

Query: 125 SAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 184
           SAA+  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDISYNHKLGYMNG
Sbjct: 134 SAATAPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDISYNHKLGYMNG 193

Query: 185 HYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSK 244
           HYTQMYPGQAMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF AVPP+SIMSK
Sbjct: 194 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 253

Query: 245 PASVAPNPGTVGG 255
           P +V PNPGTVGG
Sbjct: 254 PTTVGPNPGTVGG 264

[Close]

BLAST of Tan0007366 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 2.6e-125
Identity = 235/264 (89.02%), Postives = 244/264 (92.42%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDK+T
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDIS 180
           GSNGGGPRTT+AA+  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDIS
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDIS 180

Query: 181 YNHKLGYMNGHYTQMYPGQ-AMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPF 240
           YNHKLGY+NGHYTQMYPGQ AMVGAN LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF
Sbjct: 181 YNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 TAVPPSSIMSKPASVAPNPGTVGG 255
            AVPP+SIMSKP +V PNPGTVGG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPGTVGG 262

[Close]

BLAST of Tan0007366 vs. ExPASy TrEMBL
Match: A0A6J1KJN8 (probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493786 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 9.4e-123
Identity = 225/248 (90.73%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 10  LFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAE 69
           +FGDTTLTKVFVGGLAWETPKEAMRDHFEKFG+ILEAVII+DK+TGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 70  SAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGPRTTSAASGN 129
           SAKKACEDSAPIINGRRANCNLASLGARR SRSASATPP  PQPGSNGG PRTTSAA+GN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 130 HVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNH-KLGYMN-GHYTQMY 189
           HVQWYYPAGTHPT FHHQPH QAVPFYGYSPSPTTYIATDISYNH K+GYMN G Y Q+Y
Sbjct: 121 HVQWYYPAGTHPTAFHHQPH-QAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIY 180

Query: 190 PGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSKPASVAP 249
           PGQAMVGAN LMPMYPVYHYHQS AMGMPAHIFPPSPTAAGPF AVPP+SIMSKPASV P
Sbjct: 181 PGQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGP 240

Query: 250 NPGTVGGG 256
           NPG VGGG
Sbjct: 241 NPGRVGGG 247

[Close]

BLAST of Tan0007366 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 230/260 (88.46%), Postives = 239/260 (91.92%), Query Frame = 0


Query: 1   MTMM------SNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVT 60
           MTMM      + NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDK+T
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPLAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPP APQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTSAAS--GNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDIS 180
           GSNGGGPRTT+AA+  GNHVQWYYPAGTHPTPFHHQPH Q VPFYGYSPSP TYIATDIS
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPH-QPVPFYGYSPSP-TYIATDIS 180

Query: 181 YNHKLGYMNGHYTQMYPGQ-AMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPF 240
           YNHKLGY+NGHYTQMYPGQ AMVG N LMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF
Sbjct: 181 YNHKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPF 240

Query: 241 TAVPPSSIMSKPASVAPNPG 251
            AVPP+SIMSKP +V PNPG
Sbjct: 241 AAVPPTSIMSKPTTVGPNPG 258

[Close]

BLAST of Tan0007366 vs. ExPASy TrEMBL
Match: A0A6J1FUE8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 229/253 (90.51%), Postives = 236/253 (93.28%), Query Frame = 0


Query: 3   MMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGF 62
           M +NNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDK+TGRSKGYGF
Sbjct: 2   MSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGF 61

Query: 63  VTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQ-PGSNGGGPR 122
           VTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPP APQ PGSNGGGPR
Sbjct: 62  VTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPR 121

Query: 123 TTSAASGNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 182
           TTSA SGNHVQWYYPAGT+PT F HQPH QAVPFYGYSPSP TYIATDISYNHK+GYMNG
Sbjct: 122 TTSAPSGNHVQWYYPAGTYPTSFRHQPH-QAVPFYGYSPSP-TYIATDISYNHKVGYMNG 181

Query: 183 HYTQMYPGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSK 242
           HY Q+YPGQAMVGAN LMPMYP+YHYHQSHAMGMPAHI+PPSPTA     AVPPSSIMSK
Sbjct: 182 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTA-----AVPPSSIMSK 241

Query: 243 PASVAPNPGTVGG 255
           PASVAP PG VGG
Sbjct: 242 PASVAPTPGKVGG 247

[Close]

BLAST of Tan0007366 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 229.6 bits (584), Expect = 2.9e-60
Identity = 141/280 (50.36%), Postives = 168/280 (60.00%), Query Frame = 0


Query: 1   MTMMSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGY 60
           MT  +N  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDK+T RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 61  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGP 120
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R        +P   P+ G+     
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGN----- 120

Query: 121 RTTSAASGNHVQWYYPAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLG--- 180
           R T    GNH QWYYP+G      H Q + QAVPFYGY   P+ Y+A ++++N K+G   
Sbjct: 121 RATPPHVGNHSQWYYPSG-FTNQQHQQQNHQAVPFYGY---PSAYVAPNMTFNQKVGYVG 180

Query: 181 --YMNGHYTQMYP------------------GQAMVG-ANALMPMYPVYHYHQSHAMGMP 240
             YMNG+Y QM P                  G+ MVG A+ ++P Y VY YHQS A+G P
Sbjct: 181 GTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFP 240

Query: 241 AHIFPPSPTAAGPFTAVPPSSIMSKPASVAPNP--GTVGG 255
              F                   SKP S +  P  GTVGG
Sbjct: 241 QPSF-------------------SKPLSFSTPPISGTVGG 252

[Close]

BLAST of Tan0007366 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-45
Identity = 118/248 (47.58%), Postives = 142/248 (57.26%), Query Frame = 0


Query: 33  MRDHFEKFGEILEAVIISDKVTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 92
           M DHF K+G+ILEAVIISDK+T RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 93  SLGARRGSRSASATPPLAPQPGSNGGGPRTTSAASGNHVQWYYPAGTHPTPFHHQPHQQA 152
           SLG R           L P+ G+     R T    GNH QWYYP+G      H Q + QA
Sbjct: 61  SLGGR-----------LRPKNGN-----RATPPHVGNHSQWYYPSG-FTNQQHQQQNHQA 120

Query: 153 VPFYGYSPSPTTYIATDISYNHKLG-----YMNGHYTQMYP------------------G 212
           VPFYGY   P+ Y+A ++++N K+G     YMNG+Y QM P                  G
Sbjct: 121 VPFYGY---PSAYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGG 180

Query: 213 QAMVG-ANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPPSSIMSKPASVAPN 255
           + MVG A+ ++P Y VY YHQS A+G P   F                   SKP S +  
Sbjct: 181 RVMVGAASPMVPFYTVYPYHQSQAIGFPQPSF-------------------SKPLSFSTP 209

[Close]

BLAST of Tan0007366 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-35
Identity = 100/243 (41.15%), Postives = 127/243 (52.26%), Query Frame = 0


Query: 4   MSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFV 63
           M+   GL GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFV
Sbjct: 1   MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 60

Query: 64  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGPRTT 123
           TF++AE+A+ AC D+ P+I+GRRANCNLASLG +R   S          P   GGG    
Sbjct: 61  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPST---------PNHGGGGRINN 120

Query: 124 SAASGNHVQWYY--PAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 183
                + +Q  +  P    P  F H PH   +  +GYSP    Y +   +     G  +G
Sbjct: 121 MRVMMSTMQTGFGPPPPPQPPTFTHYPH-LPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 180

Query: 184 HYTQMY------PGQAMVGANALMPMY---------------PVYHYHQSHAMGMPAHIF 224
               +Y       G     A +  P Y               P YH+  S+    P H  
Sbjct: 181 GQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYS 229

[Close]

BLAST of Tan0007366 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.6 bits (366), Expect = 5.6e-35
Identity = 102/254 (40.16%), Postives = 130/254 (51.18%), Query Frame = 0


Query: 4   MSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFV 63
           M+   GL GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFV
Sbjct: 1   MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 60

Query: 64  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGPRTT 123
           TF++AE+A+ AC D+ P+I+GRRANCNLASLG +R   S          P   GGG    
Sbjct: 61  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPST---------PNHGGGGRINN 120

Query: 124 SAASGNHVQWYY--PAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 183
                + +Q  +  P    P  F H PH   +  +GYSP    Y +   +     G  +G
Sbjct: 121 MRVMMSTMQTGFGPPPPPQPPTFTHYPH-LPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 180

Query: 184 HYTQMY------PGQAMVGANALMPMY---------------PVYHYHQSHAMGMPAHIF 235
               +Y       G     A +  P Y               P YH+  S+    P H  
Sbjct: 181 GQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYS 240

[Close]

BLAST of Tan0007366 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.2 bits (365), Expect = 7.3e-35
Identity = 102/252 (40.48%), Postives = 130/252 (51.59%), Query Frame = 0


Query: 4   MSNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKVTGRSKGYGFV 63
           M+   GL GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFV
Sbjct: 1   MAGGIGL-GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 60

Query: 64  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPLAPQPGSNGGGPRTT 123
           TF++AE+A+ AC D+ P+I+GRRANCNLASLG +R   S          P   GGG    
Sbjct: 61  TFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPST---------PNHGGGGRINN 120

Query: 124 SAASGNHVQWYY--PAGTHPTPFHHQPHQQAVPFYGYSPSPTTYIATDISYNHKLGYMNG 183
                + +Q  +  P    P  F H PH   +  +GYSP    Y +   +     G  +G
Sbjct: 121 MRVMMSTMQTGFGPPPPPQPPTFTHYPH-LPLNLFGYSPYSPDYSSFPTNLYGMYGCTSG 180

Query: 184 HYTQMY------PGQAMVGANALMPMYPVYHYHQSHAMGMPAHIFPPSPTAAGPFTAVPP 243
               +Y       G     A +  P YP    H       P   F    ++  P    PP
Sbjct: 181 GQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPP 240

Query: 244 SSIMSKPASVAP 248
           +  M +   V P
Sbjct: 241 TFSMQQVCFVVP 240

The following BLAST results are available for this feature:

BLAST of Tan0007366 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	4.1e-59	50.36	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	3.1e-22	57.65	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	4.0e-22	57.65	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	4.0e-22	57.65	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q6P8A7	4.0e-22	57.65	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]

BLAST of Tan0007366 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891949.1	8.7e-131	91.42	probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]	[more]
XP_004143608.1	1.7e-126	92.09	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_038891950.1	2.2e-126	91.51	probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]	[more]
XP_008445852.2	5.5e-125	89.02	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]
XP_011654915.1	1.0e-123	91.94	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]

BLAST of Tan0007366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL6	8.2e-127	92.09	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A1S3BEI0	2.6e-125	89.02	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1KJN8	9.4e-123	90.73	probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5A7SY01	1.2e-122	88.46	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A6J1FUE8	1.2e-122	90.51	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Tan0007366 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	2.9e-60	50.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	1.6e-45	47.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.5e-35	41.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	5.6e-35	40.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	7.3e-35	40.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..90 e-value: 4.9E-24 score: 95.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..76 e-value: 6.3E-18 score: 64.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..94 score: 17.352901
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..98 e-value: 5.8E-25 score: 89.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..126
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 1..251
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 1..251
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 17..92 e-value: 1.95477E-43 score: 140.058
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007366.1	Tan0007366.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding