Tan0007365 (gene) Snake gourd v1

Overview


Name	Tan0007365
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	SWIM-type domain-containing protein
Location	LG07: 70408346 .. 70410275 (-)
RNA-Seq Expression	Tan0007365
Synteny	Tan0007365

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGAAGGTTATACTCATATTGTGCTATACAGAGGGAATGATTAACAATGGACCAAATGGTATATCGTATAGTAGACCTCCATCGAAAGGAATTATATTTCAAGAAGGCAGGGGATATGATGAATTGAAAAAGAGGATGAATGAGGAATTCGACACTCTAGGAGGGCTTGGAGAGTTGGAAATAACTTATCGATGTCCTGCAAATAATGCACCAAAGTCTACTCGATTTGTGCCTATGCTCCTTCAAAATGATAATGATGTGAAGTTTATGACCACTATTGCCACTCACTCACAAGTTCCTAGTTGTGTGGAGTTGTATATTAAGAGATCTCAAACCTTTGGATTACTAATTCCAACCACAAATCTAGAGAGAGAGTCAAACGCAAGTGAATTATTAAGTACTCGTAATCGGCAGAATGCAGACAAAGAATTTCCTAGATGGATGAACATGTTAGTACACACAAACAAAGGCACTCAAGTTCAATGGGATTTGATTTCGAAGGGCACAATTGGTCATTATAGATTTAAACGAGTTTTTTGGTCGTTTGGTGCAGCAATTGAAGGTTTTGCATATTGTAGGCCATTCATACAAGTTGATGGTATCCCGTTATCCAGTTCCTATCATGATGGATCTTTGTTATTTGCCACATCTGTAGATTCAAATGGGCATATATACCCTCTTGCTTTTGCAATTGTTGAGGAAGAAAGTGATGATAGTTGGTCGTGGTTTTTGCGTATTTTGCGAACGCGTGTCACACAAAGAGATGGTATATGTTTAATCTCAAATATGCATAAAGGCGTTTTGTTGGTTGTAAATGATCCTAATAGTGGTTGGAAAGAGCCAAGAGCATATCATCGCCTCTGCCTTCAACATGTGGCAACTAGCTTTGATAAAAAATATAAAAAGAAAGATCTGAAGGATTTAATGTACCGTGCAGGATGCCAACACCAGAAGCGCAAGTATGATCAGTGTATGAATGAGTTAAAACAACTTAATCCAGGATGCCTAAATTTCTTTACCCACGTAAGTATAGAAAAATGGACACAATCATATGACAATGGTTATCGTTATGGTTGGATGACCACAAACTTAGCTGAATGTATGAAAGACATTCTCGAGGGAGTTAGTAAGTTACCCATTGATGCAATAGTTAAACTAACCTTTTACCGTTGTGTACGTATCTTTGTGGGACGTGGGGCTGAAAGTTGTGTGGCCTTGAGTAAGGGAGAGTCGAACACAAAGTATGCAATGGAAAAGATAAGTAAGTGGAAGGAAAGAGCCTGTTCACACACAGTAGTTACATTAGATGACATGAATGAAAATTTTGAAGTGGTCACAGGAAGTCATGGATCAACTCCCCTTAAAGGCCAAAATAAGCAAATGGTTAGACTAAAGGATAAGACGTGTACTTGCAATAAGTGGCAATCATTTGGGATTCCATGCTCTCATGTAATTGCAGTTTGTTTATGTTGCCACATAGACTACTGGAAATTTGTTGAAGACTACTACAAATTGACAGTATATGAATCATGTTATACTCCTTCTTTTCATCCATTTGATCCTATACCTCAAGAATATTGTTGGCCTAAAATGGACTTTATGATAAACCATCCAAAGGGGTATTGGATGGGAGAATGGCATACAGGTACTTCACACACTCGTAACGAGATCGATTGGGTAAAGGTCAGTACGAAAACTCGTTGTGGACTATGCAAACAAGAAGGGCATAACAGACGTTTTTGCCCAAGCCAGAATAAAGGTTCTTCATCTTGCACAAATAACAAGAGCTAAGGCTTATTTTTCCCCTTTCAGCACATCAATGTTCACGATGAATGTTCTTATCATATGATAGTTTGTAATGGACTTCATTTTGTTGTTTACTTTTCACAGCTTTAAAACCTCTGGGTCTTCCTTACACCATTAG

mRNA sequence

ATGGGGGAGAAGGTTATACTCATATTGTGCTATACAGAGGGAATGATTAACAATGGACCAAATGGTATATCGTATAGTAGACCTCCATCGAAAGGAATTATATTTCAAGAAGGCAGGGGATATGATGAATTGAAAAAGAGGATGAATGAGGAATTCGACACTCTAGGAGGGCTTGGAGAGTTGGAAATAACTTATCGATGTCCTGCAAATAATGCACCAAAGTCTACTCGATTTGTGCCTATGCTCCTTCAAAATGATAATGATGTGAAGTTTATGACCACTATTGCCACTCACTCACAAGTTCCTAGTTGTGTGGAGTTGTATATTAAGAGATCTCAAACCTTTGGATTACTAATTCCAACCACAAATCTAGAGAGAGAGTCAAACGCAAGTGAATTATTAAGTACTCGTAATCGGCAGAATGCAGACAAAGAATTTCCTAGATGGATGAACATCTTTAAAACCTCTGGGTCTTCCTTACACCATTAG

Coding sequence (CDS)

ATGGGGGAGAAGGTTATACTCATATTGTGCTATACAGAGGGAATGATTAACAATGGACCAAATGGTATATCGTATAGTAGACCTCCATCGAAAGGAATTATATTTCAAGAAGGCAGGGGATATGATGAATTGAAAAAGAGGATGAATGAGGAATTCGACACTCTAGGAGGGCTTGGAGAGTTGGAAATAACTTATCGATGTCCTGCAAATAATGCACCAAAGTCTACTCGATTTGTGCCTATGCTCCTTCAAAATGATAATGATGTGAAGTTTATGACCACTATTGCCACTCACTCACAAGTTCCTAGTTGTGTGGAGTTGTATATTAAGAGATCTCAAACCTTTGGATTACTAATTCCAACCACAAATCTAGAGAGAGAGTCAAACGCAAGTGAATTATTAAGTACTCGTAATCGGCAGAATGCAGACAAAGAATTTCCTAGATGGATGAACATCTTTAAAACCTCTGGGTCTTCCTTACACCATTAG

Protein sequence

MGEKVILILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGELEITYRCPANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRSQTFGLLIPTTNLERESNASELLSTRNRQNADKEFPRWMNIFKTSGSSLHH

Homology

[Close]

BLAST of Tan0007365 vs. NCBI nr
Match: RVX08500.1 (hypothetical protein CK203_014195 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-07
Identity = 32/107 (29.91%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 8   ILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGELEITYRC 67
           +LCYT G I +   G+ Y+RPP KG+       +DEL+ ++    +      +L + +R 
Sbjct: 7   VLCYTRGEIIDCEFGVCYNRPPEKGVSINSMITFDELETKLCHALNINRTYIKLNMVFRY 66

Query: 68  PA--NNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRS 113
           P    N   +  +VP+ +++D DV  M T+   S  P+ +E+Y + S
Sbjct: 67  PVPFPNGRGTVNYVPLPIRDDGDVSIMFTVVAQSPPPNTIEMYCQTS 113

[Close]

BLAST of Tan0007365 vs. NCBI nr
Match: PWA56593.1 (DNA-binding WRKY [Artemisia annua])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 37/138 (26.81%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MGEKVILILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGE 60
           M  K +++LCY  G I +GP G+ Y++PPSK I  Q G  ++EL  +++           
Sbjct: 1   MTSKCVILLCYWGGNICDGPEGVCYNKPPSKAIKVQPGIKFNELMNQLHVATSIDKQKNC 60

Query: 61  LEITYRCPANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYI----------- 120
           +++  R P+    K  +++P+ + +D+D++ M  +    Q  S ++LY+           
Sbjct: 61  IKVICRYPSGFG-KMMKYIPLPITDDDDIEIMFQVLNVYQELSTIDLYLEVETQRHTKIA 120

Query: 121 KRSQTFGLLIPTTNLERE 128
           +R+Q   L+    +L RE
Sbjct: 121 RRTQKKSLIEEDASLPRE 137

[Close]

BLAST of Tan0007365 vs. NCBI nr
Match: PWA74118.1 (MuDR family transposase [Artemisia annua])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-06
Identity = 33/109 (30.28%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 1   MGEKVILILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGE 60
           M  K + +LCY +G I +GP G+ Y++PPSK I  Q G  Y++L  +++           
Sbjct: 25  MVPKFVTLLCYWDGAICDGPEGVFYNKPPSKAIKVQCGIRYNQLINQIHSAIPIDKQQHH 84

Query: 61  LEITYRCPANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYI 110
           +++  R P   A K  +++ + + ++NDV+ M  + T  +  S ++LYI
Sbjct: 85  IKVICRYP-TVAGKVMKYISLHINDNNDVEIMFDVLTRHKKLSNIDLYI 132

[Close]

BLAST of Tan0007365 vs. NCBI nr
Match: XP_034698754.1 (uncharacterized protein LOC117924268 [Vitis riparia])

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-06
Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 8   ILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGELEITYRC 67
           +LCY  G I + PNG+ YS PP K I+    + YDEL+  +           +L + +R 
Sbjct: 7   VLCYMNGEIIDRPNGVCYSCPPKKAILISNIKTYDELETNICHALSIDRTCIKLRMIFRY 66

Query: 68  PANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRS 113
           P   A  S  +  + + +D DV+ M    T S   S +E+Y++ S
Sbjct: 67  PICVANGSINYEQVPIGDDGDVRVMFNAVTQSSPRSTIEMYLETS 111

[Close]

BLAST of Tan0007365 vs. NCBI nr
Match: CAN74432.1 (hypothetical protein VITISV_040275 [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-06
Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 8   ILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGELEITYRC 67
           +LCY  G I + PNG+ YS PP K I+    + YDEL+  +           +L + +R 
Sbjct: 7   VLCYMNGEIIDRPNGVCYSCPPRKAILISNIKTYDELETNICHALSIDRTCIKLRMIFRY 66

Query: 68  PANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRS 113
           P   A  S  +  + + +D DV+ M    T S   S +E+Y++ S
Sbjct: 67  PICVANGSINYEQVPIGDDGDVRVMFNAVTQSSPRSTIEMYLETS 111

[Close]

BLAST of Tan0007365 vs. ExPASy TrEMBL
Match: A0A438JHT2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014195 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-07
Identity = 32/107 (29.91%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 8   ILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGELEITYRC 67
           +LCYT G I +   G+ Y+RPP KG+       +DEL+ ++    +      +L + +R 
Sbjct: 7   VLCYTRGEIIDCEFGVCYNRPPEKGVSINSMITFDELETKLCHALNINRTYIKLNMVFRY 66

Query: 68  PA--NNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRS 113
           P    N   +  +VP+ +++D DV  M T+   S  P+ +E+Y + S
Sbjct: 67  PVPFPNGRGTVNYVPLPIRDDGDVSIMFTVVAQSPPPNTIEMYCQTS 113

[Close]

BLAST of Tan0007365 vs. ExPASy TrEMBL
Match: A0A2U1M5P5 (DNA-binding WRKY OS=Artemisia annua OX=35608 GN=CTI12_AA415840 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.9e-07
Identity = 37/138 (26.81%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MGEKVILILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGE 60
           M  K +++LCY  G I +GP G+ Y++PPSK I  Q G  ++EL  +++           
Sbjct: 1   MTSKCVILLCYWGGNICDGPEGVCYNKPPSKAIKVQPGIKFNELMNQLHVATSIDKQKNC 60

Query: 61  LEITYRCPANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYI----------- 120
           +++  R P+    K  +++P+ + +D+D++ M  +    Q  S ++LY+           
Sbjct: 61  IKVICRYPSGFG-KMMKYIPLPITDDDDIEIMFQVLNVYQELSTIDLYLEVETQRHTKIA 120

Query: 121 KRSQTFGLLIPTTNLERE 128
           +R+Q   L+    +L RE
Sbjct: 121 RRTQKKSLIEEDASLPRE 137

[Close]

BLAST of Tan0007365 vs. ExPASy TrEMBL
Match: A0A2U1NKX3 (MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA253070 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 33/109 (30.28%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 1   MGEKVILILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGE 60
           M  K + +LCY +G I +GP G+ Y++PPSK I  Q G  Y++L  +++           
Sbjct: 25  MVPKFVTLLCYWDGAICDGPEGVFYNKPPSKAIKVQCGIRYNQLINQIHSAIPIDKQQHH 84

Query: 61  LEITYRCPANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYI 110
           +++  R P   A K  +++ + + ++NDV+ M  + T  +  S ++LYI
Sbjct: 85  IKVICRYP-TVAGKVMKYISLHINDNNDVEIMFDVLTRHKKLSNIDLYI 132

[Close]

BLAST of Tan0007365 vs. ExPASy TrEMBL
Match: A5BD12 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040275 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 33/105 (31.43%), Postives = 52/105 (49.52%), Query Frame = 0


Query: 8   ILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGELEITYRC 67
           +LCY  G I + PNG+ YS PP K I+    + YDEL+  +           +L + +R 
Sbjct: 7   VLCYMNGEIIDRPNGVCYSCPPRKAILISNIKTYDELETNICHALSIDRTCIKLRMIFRY 66

Query: 68  PANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRS 113
           P   A  S  +  + + +D DV+ M    T S   S +E+Y++ S
Sbjct: 67  PICVANGSINYEQVPIGDDGDVRVMFNAVTQSSPRSTIEMYLETS 111

[Close]

BLAST of Tan0007365 vs. ExPASy TrEMBL
Match: A0A2U1Q3T2 (MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA052360 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 43/145 (29.66%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 1   MGEKVILILCYTEGMINNGPNGISYSRPPSKGIIFQEGRGYDELKKRMNEEFDTLGGLGE 60
           M  K + +LCY +G I +GP G+ Y++ PSK I  Q G  YDEL  +++           
Sbjct: 1   MAPKFVTLLCYWDGAICDGPEGVFYNKSPSKAIKVQCGIRYDELIDQIHSAIPIDKQQHR 60

Query: 61  LEITYRCPANNAPKSTRFVPMLLQNDNDVKFMTTIATHSQVPSCVELYIKRSQTFGLLIP 120
           ++I  R P   A K  +++ + + ++NDV  M  + T  +  S ++LYI+        + 
Sbjct: 61  IKIICRYP-TVAGKVMKYISLHINDNNDVGIMFDVLTCHKKLSNIDLYIE--------LE 120

Query: 121 TTNLERESNASELLSTRNRQNADKE 146
            T   RE  A     T+N    D+E
Sbjct: 121 DTEPRREEMAPGNCITQNSVLVDEE 136

The following BLAST results are available for this feature:

BLAST of Tan0007365 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007365 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX08500.1	4.9e-07	29.91	hypothetical protein CK203_014195 [Vitis vinifera]	[more]
PWA56593.1	1.4e-06	26.81	DNA-binding WRKY [Artemisia annua]	[more]
PWA74118.1	3.2e-06	30.28	MuDR family transposase [Artemisia annua]	[more]
XP_034698754.1	3.2e-06	31.43	uncharacterized protein LOC117924268 [Vitis riparia]	[more]
CAN74432.1	4.2e-06	31.43	hypothetical protein VITISV_040275 [Vitis vinifera]	[more]

BLAST of Tan0007365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438JHT2	2.4e-07	29.91	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014195 PE=4 SV=1	[more]
A0A2U1M5P5	6.9e-07	26.81	DNA-binding WRKY OS=Artemisia annua OX=35608 GN=CTI12_AA415840 PE=4 SV=1	[more]
A0A2U1NKX3	1.5e-06	30.28	MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA253070 PE=4 SV=1	[more]
A5BD12	2.0e-06	31.43	SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040275 ...	[more]
A0A2U1Q3T2	3.4e-06	29.66	MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA052360 PE=4 SV=1	[more]

BLAST of Tan0007365 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007365.1	Tan0007365.1	mRNA