Tan0007229 (gene) Snake gourd v1

Overview


Name	Tan0007229
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein IDA-like
Location	LG04: 7877382 .. 7877833 (+)
RNA-Seq Expression	Tan0007229
Synteny	Tan0007229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAGCTTCTCTCTTCAACAACAATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCAATGCAAACGCCTCTCTTTAAACAACCCAATTGCCATTTTCATTCTTGTTCTGCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGAAAAACGATGGGACCGGAGATGGATTCCGACGTGTCGAATTCTTATCAACAAGACAATTCCAATTACAAGACAGGGTTCCGATATGTCGGACAGACCTTCAGCTTTCTCCCCCGAGGCGTTCCGATTCCTCCTTCAGCCCCATCCGACAGGCACAACTCTGTTGTTGACTCTGTTCCTCACAATTGAAAAACAACAACAAAAAAAAAAAGAAAAGAAGCCTTCTTCTTTTAATTCGATTCCTCTGAATATGGAAAATCGAATTTTTCTTTATTGAGATCCGACAGAAATTACAGGATTCGTA

mRNA sequence

CTCAAAGCTTCTCTCTTCAACAACAATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCAATGCAAACGCCTCTCTTTAAACAACCCAATTGCCATTTTCATTCTTGTTCTGCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGAAAAACGATGGGACCGGAGATGGATTCCGACGTGTCGAATTCTTATCAACAAGACAATTCCAATTACAAGACAGGGTTCCGATATGTCGGACAGACCTTCAGCTTTCTCCCCCGAGGCGTTCCGATTCCTCCTTCAGCCCCATCCGACAGGCACAACTCTGTTGTTGACTCTGTTCCTCACAATTGAAAAACAACAACAAAAAAAAAAAGAAAAGAAGCCTTCTTCTTTTAATTCGATTCCTCTGAATATGGAAAATCGAATTTTTCTTTATTGAGATCCGACAGAAATTACAGGATTCGTA

Coding sequence (CDS)

ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCAATGCAAACGCCTCTCTTTAAACAACCCAATTGCCATTTTCATTCTTGTTCTGCTTCTTCTTTCTGGGTTTTCCTCTGCAACTCGGCCGGGAAAAACGATGGGACCGGAGATGGATTCCGACGTGTCGAATTCTTATCAACAAGACAATTCCAATTACAAGACAGGGTTCCGATATGTCGGACAGACCTTCAGCTTTCTCCCCCGAGGCGTTCCGATTCCTCCTTCAGCCCCATCCGACAGGCACAACTCTGTTGTTGACTCTGTTCCTCACAATTGA

Protein sequence

MASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKTGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVPHN

Homology

[Close]

BLAST of Tan0007229 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-06
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 25  FILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKTGFRYVGQTFSFLPRGVPI 84
           F+L L   S   +A R G TM  EM  ++     +++             F +LP+GVPI
Sbjct: 13  FVLFLAASSSCVAAARIGATM--EMKKNIKRLTFKNS-----------HIFGYLPKGVPI 72

Query: 85  PPSAPSDRHNSVVDSVPH 103
           PPSAPS RHNS V+S+PH
Sbjct: 73  PPSAPSKRHNSFVNSLPH 77

[Close]

BLAST of Tan0007229 vs. NCBI nr
Match: KAG6601330.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.3e-25
Identity = 69/101 (68.32%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQD 60
           ++SSSSSSSS     LS     AIF+L+LLL+SGF SATRPGKTMG E+  D+S      
Sbjct: 2   LSSSSSSSSSSSSSSLS-----AIFVLLLLLVSGFCSATRPGKTMGHELKPDLS------ 61

Query: 61  NSNYKTGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVP 102
           N NYKTGFRYVGQTFS+LPRGVPIPPS PSDRHNS+VDS+P
Sbjct: 62  NFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 91

[Close]

BLAST of Tan0007229 vs. NCBI nr
Match: KAG6574002.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.3e-24
Identity = 63/87 (72.41%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 17  SLNNPIAIFILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKTGFRYVGQTFS 76
           S NNP+AI +L LLLLSGF SATRP K  GPEMDS       Q   NYKTGFRY G+TFS
Sbjct: 5   SSNNPVAIVVLALLLLSGFCSATRPLKPTGPEMDSG------QVGLNYKTGFRYRGETFS 64

Query: 77  FLPRGVPIPPSAPSDRHNSVVDSVPHN 104
           FLPR +PIPPSAPSDRHNSVVDSVP N
Sbjct: 65  FLPRNIPIPPSAPSDRHNSVVDSVPSN 85

[Close]

BLAST of Tan0007229 vs. NCBI nr
Match: KAG7032113.1 (Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 69/101 (68.32%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQD 60
           M SSSSSSSS      SL+   AIF+L+LLL+SGF SATRPGKTMG E+  D+       
Sbjct: 1   MLSSSSSSSS------SLS---AIFVLLLLLVSGFCSATRPGKTMGHELKPDLL------ 60

Query: 61  NSNYKTGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVP 102
           N NYKTGFRYVGQTFS+LPRGVPIPPS PSDRHNS+VDS+P
Sbjct: 61  NFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP 86

[Close]

BLAST of Tan0007229 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-23
Identity = 71/104 (68.27%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 2   ASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMG-PEMDSDVSNSYQQD 61
           +SSSSSSSSFQ K+    N I IFIL+LLLLSGFSSATRPG TM  P+M           
Sbjct: 9   SSSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTMEFPDM----------S 68

Query: 62  NSNYK-TGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVPHN 104
           NSNYK T FRY GQTF FLP+GVPIPPS PSDRHNSVVDS+P N
Sbjct: 69  NSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Tan0007229 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 6.9e-23
Identity = 71/104 (68.27%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 2   ASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMG-PEMDSDVSNSYQQD 61
           +SSSSSSSSFQ K+    N I IFIL+LLLLSGFSSATRPG TM  P+M           
Sbjct: 13  SSSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTMEFPDM----------S 72

Query: 62  NSNYK-TGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVPHN 104
           NSNYK T FRY GQTF FLP+GVPIPPS PSDRHNSVVDS+P N
Sbjct: 73  NSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Tan0007229 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.4e-23
Identity = 71/104 (68.27%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 2   ASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMG-PEMDSDVSNSYQQD 61
           +SSSSSSSSFQ K+    N I IFIL+LLLLSGFSSATRPG TM  P+M           
Sbjct: 13  SSSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTMEFPDM----------S 72

Query: 62  NSNYK-TGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVPHN 104
           NSNYK T FRY GQTF FLP+GVPIPPS PSDRHNSVVDS+P N
Sbjct: 73  NSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of Tan0007229 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.4e-23
Identity = 71/104 (68.27%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 2   ASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMG-PEMDSDVSNSYQQD 61
           +SSSSSSSSFQ K+    N I IFIL+LLLLSGFSSATRPG TM  P+M           
Sbjct: 9   SSSSSSSSSFQFKQ----NSIPIFILLLLLLSGFSSATRPGGTMEFPDM----------S 68

Query: 62  NSNYK-TGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVPHN 104
           NSNYK T FRY GQTF FLP+GVPIPPS PSDRHNSVVDS+P N
Sbjct: 69  NSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of Tan0007229 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 66/104 (63.46%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MASSSSSSSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMG-PEMDSDVSNSYQQ 60
           M SSSS +S           PI I +L+LLLLSG SSATRPGKTM   EM+ D+SNS   
Sbjct: 1   MPSSSSQTSI----------PIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNS--- 60

Query: 61  DNSNYKTGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDSVPHN 104
               YKT FRY GQTFSFLP+GVPIPPS PSDRHNSVVDS+P N
Sbjct: 61  ----YKTAFRYGGQTFSFLPKGVPIPPSGPSDRHNSVVDSLPPN 87

[Close]

BLAST of Tan0007229 vs. ExPASy TrEMBL
Match: A0A1R3J5S6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07485 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 7   SSSSFQCKRLS----LNNPIAIFILVLLLLSGFSSATRPGKTMGPEMDSDVS-NSYQQDN 66
           SS SFQ K++S    L+  I +  L+++LL+G S ATRPG+TM    D ++S  S+++  
Sbjct: 5   SSLSFQSKQISCTRQLSRTICVIFLIIMLLAGSSFATRPGRTMMITDDDELSMTSFRR-- 64

Query: 67  SNYKTGFRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDS 100
             ++T F+Y GQ F+F P+G PIPPS PS RHNSVVDS
Sbjct: 65  -KHETSFQYQGQMFNFFPKGTPIPPSGPSKRHNSVVDS 99

[Close]

BLAST of Tan0007229 vs. ExPASy TrEMBL
Match: A0A5D2EBI1 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 8   SSSFQCKRLSLNNPIAIFILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKTG 67
           S    C R  L+N I + + ++ LL+G S ATRPGKT+   +D  VS +       Y+TG
Sbjct: 13  SKKISCTRQQLSNIIYV-VFLITLLAGSSFATRPGKTI--IVDDTVSMTVFP--RKYETG 72

Query: 68  FRYVGQTFSFLPRGVPIPPSAPSDRHNSVVDS 100
           FRY GQ F+F P+G+PIPPS PS RHNSVVDS
Sbjct: 73  FRYQGQMFNFFPKGIPIPPSGPSKRHNSVVDS 99

[Close]

BLAST of Tan0007229 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 25  FILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKTGFRYVGQTFSFLPRGVPI 84
           F+L L   S   +A R G TM  EM  ++     +++             F +LP+GVPI
Sbjct: 13  FVLFLAASSSCVAAARIGATM--EMKKNIKRLTFKNS-----------HIFGYLPKGVPI 72

Query: 85  PPSAPSDRHNSVVDSVPH 103
           PPSAPS RHNS V+S+PH
Sbjct: 73  PPSAPSKRHNSFVNSLPH 77

[Close]

BLAST of Tan0007229 vs. TAIR 10
Match: AT3G25655.1 (inflorescence deficient in abscission (IDA)-like 1 )

HSP 1 Score: 43.9 bits (102), Expect = 9.1e-05
Identity = 24/81 (29.63%), Postives = 42/81 (51.85%), Query Frame = 0


Query: 22  IAIFILVLLLLSGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKTGFRYVGQTFSFLPRG 81
           + ++I+ LL+   +++  R    +GP   S+      +       GF + G+ F    + 
Sbjct: 10  MTLYIVFLLIFGSYNATAR----IGPIKLSETEIVQTRSRQEIIGGFTFKGRVFHSFSKR 69

Query: 82  VPIPPSAPSDRHNSVVDSVPH 103
           V +PPS PS RHNSVV+++ H
Sbjct: 70  VLVPPSGPSMRHNSVVNNLKH 86

[Close]

BLAST of Tan0007229 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 40.8 bits (94), Expect = 7.7e-04
Identity = 29/90 (32.22%), Postives = 41/90 (45.56%), Query Frame = 0


Query: 14 KRLSLNNPIAIFILVLLLL-------SGFSSATRPGKTMGPEMDSDVSNSYQQDNSNYKT 73
          +RLS+N P A  +L+L L        S FSS+               S  Y+  N ++  
Sbjct: 11 RRLSINRPQAFLLLILCLFFIHHCDASRFSSS---------------SVFYRNPNYDHSN 70

Query: 74 GFRYVGQTFSFLPRGVPIPPSAPSDRHNSV 97
               G    FLPR +P+P SAPS +HN +
Sbjct: 71 NTVRRGHFLGFLPRHLPVPASAPSRKHNDI 85

The following BLAST results are available for this feature:

BLAST of Tan0007229 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	3.6e-06	41.03	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Tan0007229 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601330.1	3.3e-25	68.32	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6574002.1	6.3e-24	72.41	Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032113.1	2.4e-23	68.32	Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0034518.1	6.9e-23	68.27	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	6.9e-23	68.27	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0007229 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCP4	3.4e-23	68.27	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	3.4e-23	68.27	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0KR07	1.2e-20	63.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A1R3J5S6	1.4e-13	48.98	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_07485 PE=4 ...	[more]
A0A5D2EBI1	1.2e-12	51.09	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A12G197000v1 PE=...	[more]

BLAST of Tan0007229 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	2.6e-07	41.03	Putative membrane lipoprotein	[more]
AT3G25655.1	9.1e-05	29.63	inflorescence deficient in abscission (IDA)-like 1	[more]
AT3G18715.1	7.7e-04	32.22	inflorescence deficient in abscission (IDA)-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..103
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 6..103
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 6..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007229.1	Tan0007229.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0110165	cellular anatomical entity