Tan0007227 (gene) Snake gourd v1

Overview
NameTan0007227
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCytochrome b6
LocationContig00034: 99195 .. 100624 (+)
RNA-Seq ExpressionTan0007227
SyntenyTan0007227
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGACAGAGAATAAGTCGGTCATCTTGATCAAGATGATTTTATCTCGTTGGATATTCAGTCTAGGCTAGTATCTGGAGCACAGAATATATGAAATAGATTACAAAATATTAGAACAAATATTAGAACTATGATTCATACTTATCAGACCTCGTGGCCGGACTCCGAAAAAAGAGTTAGAAGTGATAAATTCAAAAAATTTTATTCTTTCGTTTATACTTATTTTGGTTAAAGGATAAACGTTTCTTTGTCTTTTTTTCATTATATTCAGTCATTGAATAAGTGATAATCCAAGGGTTCTTACTCAGGGAATTGTGGAACTTTTTTTTGGAAGGTTTTATTGAATCATCGTGGTTCTAGTATGAATCTAAGGTTTTAATTGATTCATAGGGTCTTAACAAGAGAATTCCTATCAATAATAAAGAAAACAAGAGTAAAGTCGCATTACACACAAATCAAAGAAAAAAATAGGTAAATAGAAGATTCAAGAGGCCCCTAATGATCAATATAAATACGAATGAGCCGACTTGATATTTGGGCATTATAACTACAAAGAAGACTTTTCGGATTTTGATTCTTTCGTATCTTCAGAGCAAAAATTGAATCATAGCATTAAGAAGTTTGAAACTTTTTAGTACACATATCCGTTACGAGCGGTATTTGGGTGTTTCTGTTTGAGCCGTACGAGACGAAATTCTCATATACGGTTCTCAGAGGGGGATCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACTGGTGGCTTAAAAAAACCTCGTGAATTTGGGTTACAGGTGTGGTTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGAGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

mRNA sequence

ATGAGTGTAGGGGGATCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACTGGTGGCTTAAAAAAACCTCGTGAATTTGGGTTACAGGTGTGGTTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGAGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

Coding sequence (CDS)

ATGAGTGTAGGGGGATCCCCTTGGTTTACCTATCTCAATAAAGTGTATGATTGGTTCGAAGAACGTCTTGAAATTCAGGCGATTGCAGATGATATAACTAGCAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTAGTACAAGTAGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGAGGCTTTTGCTTCTGTTCAATATATAATGACGGAAGCTAACTTTGGTTGGTTAATCCGATCAGTTCATAGATGGTCGGCAAGTATGATGGTCTTAATGATGATCCTGCACGTATTTCGCGTGTATCTTACTGGTGGCTTAAAAAAACCTCGTGAATTTGGGTTACAGGTGTGGTTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCCTTTGGTGTAACTGGTTATTCCTTACCTCGGGACCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGTGTACCGGAAGCTATTCCAGTAATAGGGTCGCCTTTGGTAGAGTTATTACGAGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGCAAGGCATTTCTGGTCCTTTATAG

Protein sequence

MSVGGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Homology
BLAST of Tan0007227 vs. ExPASy Swiss-Prot
Match: A0A365 (Cytochrome b6 OS=Coffea arabica OX=13443 GN=petB PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.6e-115
Identity = 209/218 (95.87%), Postives = 211/218 (96.79%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQV 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KKPRE     
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPREL---T 120

Query: 132 WFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 191
           W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ
Sbjct: 121 WVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 180

Query: 192 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Tan0007227 vs. ExPASy Swiss-Prot
Match: Q4VZI6 (Cytochrome b6 OS=Cucumis sativus OX=3659 GN=petB PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.6e-115
Identity = 209/218 (95.87%), Postives = 211/218 (96.79%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQV 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KKPRE     
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPREL---T 120

Query: 132 WFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 191
           W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ
Sbjct: 121 WVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 180

Query: 192 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Tan0007227 vs. ExPASy Swiss-Prot
Match: Q0G9I9 (Cytochrome b6 OS=Liriodendron tulipifera OX=3415 GN=petB PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 2.1e-115
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQV 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KKPRE     
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPREL---T 120

Query: 132 WFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 191
           W TGV+LAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ
Sbjct: 121 WVTGVILAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 180

Query: 192 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Tan0007227 vs. ExPASy Swiss-Prot
Match: Q0G9T2 (Cytochrome b6 OS=Daucus carota OX=4039 GN=petB PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 3.6e-115
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQV 131
           TVT+AFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KKPRE     
Sbjct: 61  TVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPREL---T 120

Query: 132 WFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 191
           W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ
Sbjct: 121 WVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 180

Query: 192 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Tan0007227 vs. ExPASy Swiss-Prot
Match: Q68RX7 (Cytochrome b6 OS=Panax ginseng OX=4054 GN=petB PE=3 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 3.6e-115
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQV 131
           TVT+AFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KKPRE     
Sbjct: 61  TVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPREL---T 120

Query: 132 WFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 191
           W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ
Sbjct: 121 WVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 180

Query: 192 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 181 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 215

BLAST of Tan0007227 vs. NCBI nr
Match: ABI97446.1 (cytochrome b6, partial [Cucumis sativus] >AHM91224.1 cytochrome b6, partial [Lagenaria siceraria] >ARQ16108.1 cytochrome b6, partial [Cucumis sativus] >ARQ16191.1 cytochrome b6, partial [Cucumis sativus] >ARQ16274.1 cytochrome b6, partial [Cucumis sativus])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 9   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 68

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 69  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 128

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 129 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 188

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 189 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 231

BLAST of Tan0007227 vs. NCBI nr
Match: YP_004841813.1 (cytochrome b6 [Cucumis melo subsp. melo] >YP_009860103.1 cytochrome b6 [Cucumis melo subsp. agrestis] >AHM88691.1 cytochrome b6 [Lagenaria siceraria] >QJF46414.1 cytochrome b6 [Cucumis melo] >AEM76922.1 cytochrome b6 [Cucumis melo subsp. melo] >AHM88750.1 cytochrome b6 [Lagenaria siceraria] >AHM88808.1 cytochrome b6 [Lagenaria siceraria])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 131 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 190

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Tan0007227 vs. NCBI nr
Match: QCY72872.1 (PetB [Cucumis hystrix])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 20  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 79

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 80  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 139

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 140 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 199

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 200 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 242

BLAST of Tan0007227 vs. NCBI nr
Match: YP_009456091.1 (cytochrome b6 [Momordica charantia] >AUJ21858.1 cytochrome b6 [Momordica charantia])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 23  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 82

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 83  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 142

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 143 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 202

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 203 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 245

BLAST of Tan0007227 vs. NCBI nr
Match: AHM88865.1 (cytochrome b6, partial [Lagenaria siceraria])

HSP 1 Score: 438.7 bits (1127), Expect = 3.0e-119
Identity = 218/225 (96.89%), Postives = 218/225 (96.89%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 131 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 190

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGP 229
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGP
Sbjct: 191 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGP 232

BLAST of Tan0007227 vs. ExPASy TrEMBL
Match: A0A1X9Q1E4 (Cytochrome b6 (Fragment) OS=Cucumis sativus OX=3659 GN=petB PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 9   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 68

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 69  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 128

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 129 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 188

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 189 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 231

BLAST of Tan0007227 vs. ExPASy TrEMBL
Match: A0A1S4EU38 (Cytochrome b6 OS=Cucumis melo OX=3656 GN=petB PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 131 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 190

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Tan0007227 vs. ExPASy TrEMBL
Match: X2F8I9 (Cytochrome b6 OS=Lagenaria siceraria OX=3668 GN=petB PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 131 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 190

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Tan0007227 vs. ExPASy TrEMBL
Match: A0A6M8Y6H3 (Cytochrome b6 OS=Cucumis melo subsp. agrestis OX=217619 GN=petB PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 11  GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 70

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 71  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 130

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 131 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 190

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 191 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 233

BLAST of Tan0007227 vs. ExPASy TrEMBL
Match: X2F2W5 (Cytochrome b6 (Fragment) OS=Lagenaria siceraria OX=3668 GN=petB PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 219/226 (96.90%), Postives = 219/226 (96.90%), Query Frame = 0

Query: 4   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 63
           GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF
Sbjct: 9   GGSPWFTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGF 68

Query: 64  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKK 123
           AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KK
Sbjct: 69  AMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKK 128

Query: 124 PREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 183
           PRE     W TGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL
Sbjct: 129 PREL---TWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELL 188

Query: 184 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL
Sbjct: 189 RGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 231

BLAST of Tan0007227 vs. TAIR 10
Match: ATCG00720.1 (photosynthetic electron transfer B )

HSP 1 Score: 407.1 bits (1045), Expect = 9.1e-114
Identity = 205/218 (94.04%), Postives = 208/218 (95.41%), Query Frame = 0

Query: 12  LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 71
           ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP
Sbjct: 1   MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRP 60

Query: 72  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGLKKPREFGLQV 131
           TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGG KKPRE     
Sbjct: 61  TVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPREL---T 120

Query: 132 WFTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQ 191
           W TGVVL VLTASFGVTGYSLP DQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQ
Sbjct: 121 WVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQ 180

Query: 192 STLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISGPL 230
           STLTRFYSLHTFVLPLLTAVFMLMHF MIRKQGISGPL
Sbjct: 181 STLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215

BLAST of Tan0007227 vs. TAIR 10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal )

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-29
Identity = 68/192 (35.42%), Postives = 106/192 (55.21%), Query Frame = 0

Query: 38  PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVH 97
           P +++ ++  G +   C ++Q+ TG  +  +Y P V  AF SV++IM +   GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 98  RWSASMMVLMMILHVFRVYLTGGLKKPREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQI 157
              ASM ++++ LH+FR         PREF   VW  GVV+ +L       GY LP  Q+
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREF---VWCLGVVIFLLMIVTAFIGYVLPWGQM 148

Query: 158 GYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF 217
            +W   ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH  +LP +     L+H 
Sbjct: 149 SFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFILVGASLLHL 208

Query: 218 PMIRKQGISGPL 230
             + + G + PL
Sbjct: 209 AALHQYGSNNPL 216

BLAST of Tan0007227 vs. TAIR 10
Match: ATMG00220.1 (apocytochrome b )

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-29
Identity = 68/192 (35.42%), Postives = 106/192 (55.21%), Query Frame = 0

Query: 38  PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVH 97
           P +++ ++  G +   C ++Q+ TG  +  +Y P V  AF SV++IM +   GWL+R +H
Sbjct: 29  PSNLSYWWGFGPLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH 88

Query: 98  RWSASMMVLMMILHVFRVYLTGGLKKPREFGLQVWFTGVVLAVLTASFGVTGYSLPRDQI 157
              ASM ++++ LH+FR         PREF   VW  GVV+ +L       GY LP  Q+
Sbjct: 89  ANGASMFLIVVYLHIFRGLYHASYSSPREF---VWCLGVVIFLLMIVTAFIGYVLPWGQM 148

Query: 158 GYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHF 217
            +W   ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH  +LP +     L+H 
Sbjct: 149 SFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFILVGASLLHL 208

Query: 218 PMIRKQGISGPL 230
             + + G + PL
Sbjct: 209 AALHQYGSNNPL 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A3651.6e-11595.87Cytochrome b6 OS=Coffea arabica OX=13443 GN=petB PE=3 SV=1[more]
Q4VZI61.6e-11595.87Cytochrome b6 OS=Cucumis sativus OX=3659 GN=petB PE=3 SV=1[more]
Q0G9I92.1e-11595.41Cytochrome b6 OS=Liriodendron tulipifera OX=3415 GN=petB PE=3 SV=1[more]
Q0G9T23.6e-11595.41Cytochrome b6 OS=Daucus carota OX=4039 GN=petB PE=3 SV=1[more]
Q68RX73.6e-11595.41Cytochrome b6 OS=Panax ginseng OX=4054 GN=petB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ABI97446.11.4e-11996.90cytochrome b6, partial [Cucumis sativus] >AHM91224.1 cytochrome b6, partial [Lag... [more]
YP_004841813.11.4e-11996.90cytochrome b6 [Cucumis melo subsp. melo] >YP_009860103.1 cytochrome b6 [Cucumis ... [more]
QCY72872.11.4e-11996.90PetB [Cucumis hystrix][more]
YP_009456091.11.4e-11996.90cytochrome b6 [Momordica charantia] >AUJ21858.1 cytochrome b6 [Momordica charant... [more]
AHM88865.13.0e-11996.89cytochrome b6, partial [Lagenaria siceraria][more]
Match NameE-valueIdentityDescription
A0A1X9Q1E46.6e-12096.90Cytochrome b6 (Fragment) OS=Cucumis sativus OX=3659 GN=petB PE=3 SV=1[more]
A0A1S4EU386.6e-12096.90Cytochrome b6 OS=Cucumis melo OX=3656 GN=petB PE=3 SV=1[more]
X2F8I96.6e-12096.90Cytochrome b6 OS=Lagenaria siceraria OX=3668 GN=petB PE=3 SV=1[more]
A0A6M8Y6H36.6e-12096.90Cytochrome b6 OS=Cucumis melo subsp. agrestis OX=217619 GN=petB PE=3 SV=1[more]
X2F2W56.6e-12096.90Cytochrome b6 (Fragment) OS=Lagenaria siceraria OX=3668 GN=petB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00720.19.1e-11494.04photosynthetic electron transfer B [more]
AT2G07727.11.4e-2935.42Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal [more]
ATMG00220.11.4e-2935.42apocytochrome b [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 33..224
e-value: 4.3E-82
score: 274.5
IPR005797Cytochrome b/b6, N-terminalPROSITEPS51002CYTB_NTERcoord: 15..229
score: 34.539108
IPR005797Cytochrome b/b6, N-terminalCDDcd00284Cytochrome_b_Ncoord: 25..226
e-value: 8.60088E-89
score: 258.837
NoneNo IPR availablePIRSFPIRSF000032Cytochrome_b6coord: 12..229
e-value: 3.0E-115
score: 381.3
NoneNo IPR availablePIRSRPIRSR038885-2PIRSR038885-2coord: 18..228
e-value: 1.0E-45
score: 154.3
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 22..229
IPR027387Cytochrome b/b6-like domain superfamilyGENE3D1.20.810.10Cytochrome Bc1 Complex; Chain Ccoord: 8..229
e-value: 2.1E-87
score: 295.2
IPR023530Cytochrome b6, PetBPANTHERPTHR19271:SF20SUBFAMILY NOT NAMEDcoord: 22..229
IPR023530Cytochrome b6, PetBHAMAPMF_00633Cytb6_f_cytb6coord: 12..229
score: 43.317383
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILY81342Transmembrane di-heme cytochromescoord: 16..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0007227.1Tan0007227.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0016491 oxidoreductase activity