Tan0007180 (gene) Snake gourd v1

Overview


Name	Tan0007180
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 5055160 .. 5055449 (+)
RNA-Seq Expression	Tan0007180
Synteny	Tan0007180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAAATGGCTTCCAATAAGAAGCACTTAATAATTTTGGCAATTTTCTTATATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCGAGGATCTTGAATCCAAATGGTACATTATTATTTATTATTATTTTTTTATAATAATTATTTTTTTTTTGCTAACCAAGATCAATGAAGTACCAAGTTTTTCAGGAAATATGAAGGCCCTGGATATCAAGTTCATTGTACTGGGACGAATTGTTCGACGAGATTTGGCACATGGAGGAAATTATAGCCCTGGAAATCGATAA

mRNA sequence

ATGGACAAAATGGCTTCCAATAAGAAGCACTTAATAATTTTGGCAATTTTCTTATATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCGAGGATCTTGAATCCAAATGGAAATATGAAGGCCCTGGATATCAAGTTCATTGTACTGGGACGAATTGTTCGACGAGATTTGGCACATGGAGGAAATTATAGCCCTGGAAATCGATAA

Coding sequence (CDS)

ATGGACAAAATGGCTTCCAATAAGAAGCACTTAATAATTTTGGCAATTTTCTTATATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCGAGGATCTTGAATCCAAATGGAAATATGAAGGCCCTGGATATCAAGTTCATTGTACTGGGACGAATTGTTCGACGAGATTTGGCACATGGAGGAAATTATAGCCCTGGAAATCGATAA

Protein sequence

MDKMASNKKHLIILAIFLYLMLFLSTYGAARILNPNGNMKALDIKFIVLGRIVRRDLAHGGNYSPGNR

Homology

[Close]

BLAST of Tan0007180 vs. NCBI nr
Match: KGN50358.1 (hypothetical protein Csa_000417 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 3.4e-18
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MDKMASNKKHLIILAIFLYLMLFLSTYGAARILNPNGNMKALDIKFIVLG-RIVRRDLAH 60
          M+KMAS KKHLIILA  LYLMLFLSTYGAARIL+ NG+MK  +IK IV+G RIVRRDLAH
Sbjct: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60

Query: 61 GGNYSPG 67
          GGNY PG
Sbjct: 61 GGNYGPG 67

[Close]

BLAST of Tan0007180 vs. NCBI nr
Match: KAG6605659.1 (hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-16
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 4  MASNKKHLIILAIFLYLMLFLSTYGAARILNPNGNMKALDIKFIVLGRIVRRDLAHGGNY 63
          M SNKKHLI L I LYLMLFLS+YGAAR+  PNG+M A ++K I LGRI+RRDLA+GGNY
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFLSSYGAARVFIPNGHMNAFEMKPITLGRIMRRDLAYGGNY 60

Query: 64 SPGNR 69
          SPG +
Sbjct: 61 SPGKQ 65

[Close]

BLAST of Tan0007180 vs. NCBI nr
Match: KAG7035570.1 (hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 2.4e-16
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 4  MASNKKHLIILAIFLYLMLFLSTYGAARILNPNGNMKALDIKFIVLGRIVRRDLAHGGNY 63
          M SNKKHLI L I LYLMLFLS+YGAAR+  PNG+M A ++K I LGRI+RRDLA+GGNY
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFLSSYGAARVFIPNGHMNAFEMKPITLGRIMRRDLAYGGNY 60

Query: 64 SPGNR 69
          SPG +
Sbjct: 61 SPGKQ 65

[Close]

BLAST of Tan0007180 vs. ExPASy TrEMBL
Match: A0A0A0KL54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 53/67 (79.10%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MDKMASNKKHLIILAIFLYLMLFLSTYGAARILNPNGNMKALDIKFIVLG-RIVRRDLAH 60
          M+KMAS KKHLIILA  LYLMLFLSTYGAARIL+ NG+MK  +IK IV+G RIVRRDLAH
Sbjct: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60

Query: 61 GGNYSPG 67
          GGNY PG
Sbjct: 61 GGNYGPG 67

The following BLAST results are available for this feature:

BLAST of Tan0007180 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0007180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50358.1	3.4e-18	79.10	hypothetical protein Csa_000417 [Cucumis sativus]	[more]
KAG6605659.1	2.4e-16	70.77	hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035570.1	2.4e-16	70.77	hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Tan0007180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL54	1.6e-18	79.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1	[more]

BLAST of Tan0007180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007180.1	Tan0007180.1	mRNA