Tan0007076 (gene) Snake gourd v1

Overview


Name	Tan0007076
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNase H domain-containing protein
Location	LG02: 22581292 .. 22583263 (-)
RNA-Seq Expression	Tan0007076
Synteny	Tan0007076

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGGCCGAAATTAAGATTCTAGAGTCTGACTTAACACAAGAGAAAGAGGAGACCTGGAATAAGAAAATGGTTGAACTACTAGAAGAGGATAATCTTTATTGGCGTCAGAGAGCAAGAGAGGACTGGTTGCAGTGGGGGGAGCGTAATACCAAGTGGTTTCATATTAGAGCATCGACAAGACGAAAGAAAAACCACATTCAGGGCCTTTCTAACAACGACGGTGATTGGATTACAAATGAGGTTGACATGGGAAGGCTGGCTATTTCATACTTTGCTAATTTATTCAAAGTCAACGTATCTGATCCTGAAACAACCGAGGAAATTATCTGCAGTATTCCCCAAACCGTCTCAGAGGAGTCAAATACTTGGCTGTTAAAAGACTTTACAAGGACAGAAATTGAGGATGTGATAAAGGGTATGAGCCCTAAACCCTAGGTCGAACGGAGTACATGCTGGTTTCTTCCAAGCCTATTGGGACATAGTTGGAGCGAGTATTTCAGATATTTGTTTAAGTTTTTTGAACAGAAACGAGGAGTTGAGAAACATAAACCAATCGCTATTAGCTTTAATTCCCAAGAACAATCCTGAAAAGCTAGAGGATTTCAGACCAATCAGCCTCTGCAATGTATCTATAAGATTATTGCCAAATGTTTAGCTAATAGACTAAAAAAAGTACTAAATCTGGTTATTTCACCAGAACAGTCAGCTTTCATCCCTGGTAGAATGATTACGGATAATGCACTTATTGGCTTCGAATGTTTGCATGCGATTAACAATAAGTGTACGGGACAGGTAGGATCAACGACAATGAAACTTGATATGAGCAAAGCTTATGACAGGATTGAGTGGTGCTATCTAAGGCAAGTCATGCTAAAAATGGGTTTTCACTCCTGCTGGGTTGACAAGGTCAAGAAGTGCATCGAATCTGTCAATTTTTCGATCCTGCTAAATGGCAAGGACATGACCTTTTTTACCCTACAAGGAGATTGAGACAGGGAGATCCTCTTTCCCTTTACGTTTTTATTATTTGTGTTGAAGGTTTTTCTGCTTTACTCCACAGAGAGCAGGCTCTGAATAGTTGTAGTGGTTTGATAATTAACCGTTTCTGTCCTATAATTTCTCATCTTTTCTATGCAGATGATAGCATAATTTTCTTCAGGGCTTTCCCGGAGGACATCAGAACAATTAAAAGGGTTTTGAATTGGTATGAACGGGCTTCTGGACAGATGGTCAACTTTGAAAAATCAGTGTTTATGGTTAGCAAGAATACAACATCAAACATGATGGAGATGATAAATCAGATTCTTAATGTTCGCCACACAAACTCTTTGGGTTGCTACTTAGGTCTACCCTCCCAGAATTTCAAAAATAAGTCTCAGGTCTTCAGGGCAATTAAAGACCGGGTGTGGCAGGCACTACGGGGTTGGCAAGGTAAACTTTTCTCTATTAGAGGTAAAGAAGTGCTCATAAAGGCGGTGGCCCAAGCCATCCCGGTTTACACAATGAGTTGTTTCCAGTTGCCAAAAGGTCTTTGTGCGGATCTGAATGCCATATGCGCAAGATTTGGTGGGGTTCTAATGATAAAGGCCGAAAAATTCAGTGGCTTCGCTGGGATCGCCTTTGTAGTCCAAAAGATGATGGGGGCTTGGGTTTTAGAGATATATCCTTATTCAACCAGGCTATGTTGGCAAAACAACGCTGACGTCTTCTTAGACAATCGGACAACCTTCTTTTCAGGATCCTCCGCGACCGTTATTTTCAGACAGGGAAGTTTCTAAACGGAACTCTTGGCTCTAACCCATCATTTACCTGGCGGAGTATTTTGTGGGGTTGGGATCTATTCATGAAAGGGTACAGATGGAAAATTGGAAGTGGATACCAGGTAAATATCATGGATGACCCCTGGTTTACTAGTGAAGGTCGAGAGCACCCGACGGTGGTTACTCCCAATCTTGCTCATGTTTAG

mRNA sequence

ATGAAAGAGGCCGAAATTAAGATTCTAGAGTCTGACTTAACACAAGAGAAAGAGGAGACCTGGAATAAGAAAATGGTTGAACTACTAGAAGAGGATAATCTTTATTGGCGTCAGAGAGCAAGAGAGGACTGGTTGCAGTGGGGGGAGCGTAATACCAAGTGGTTTCATATTAGAGCATCGACAAGACGAAAGAAAAACCACATTCAGGGCCTTTCTAACAACGACGGTGATTGGATTACAAATGAGGTTGACATGGGAAGGCTGGCTATTTCATACTTTGCTAATTTATTCAAAGTCAACGTATCTGATCCTGAAACAACCGAGGAAATTATCTGCAGTATTCCCCAAACCGTCTCAGAGGAGATCCTCCGCGACCGTTATTTTCAGACAGGGAAGTTTCTAAACGGAACTCTTGGCTCTAACCCATCATTTACCTGGCGGAGTATTTTGTGGGGTTGGGATCTATTCATGAAAGGGTACAGATGGAAAATTGGAAGTGGATACCAGGTAAATATCATGGATGACCCCTGGTTTACTAGTGAAGGTCGAGAGCACCCGACGGTGGTTACTCCCAATCTTGCTCATGTTTAG

Coding sequence (CDS)

ATGAAAGAGGCCGAAATTAAGATTCTAGAGTCTGACTTAACACAAGAGAAAGAGGAGACCTGGAATAAGAAAATGGTTGAACTACTAGAAGAGGATAATCTTTATTGGCGTCAGAGAGCAAGAGAGGACTGGTTGCAGTGGGGGGAGCGTAATACCAAGTGGTTTCATATTAGAGCATCGACAAGACGAAAGAAAAACCACATTCAGGGCCTTTCTAACAACGACGGTGATTGGATTACAAATGAGGTTGACATGGGAAGGCTGGCTATTTCATACTTTGCTAATTTATTCAAAGTCAACGTATCTGATCCTGAAACAACCGAGGAAATTATCTGCAGTATTCCCCAAACCGTCTCAGAGGAGATCCTCCGCGACCGTTATTTTCAGACAGGGAAGTTTCTAAACGGAACTCTTGGCTCTAACCCATCATTTACCTGGCGGAGTATTTTGTGGGGTTGGGATCTATTCATGAAAGGGTACAGATGGAAAATTGGAAGTGGATACCAGGTAAATATCATGGATGACCCCTGGTTTACTAGTGAAGGTCGAGAGCACCCGACGGTGGTTACTCCCAATCTTGCTCATGTTTAG

Protein sequence

MKEAEIKILESDLTQEKEETWNKKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSNNDGDWITNEVDMGRLAISYFANLFKVNVSDPETTEEIICSIPQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMDDPWFTSEGREHPTVVTPNLAHV

Homology

[Close]

BLAST of Tan0007076 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-06
Identity = 23/67 (34.33%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 115 PQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMD 174
           P T+   +LR RYF     +  ++G+ PS+ WRSI+ G +L  +G    IG G    +  
Sbjct: 81  PHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWL 140

Query: 175 DPWFTSE 182
           D W   E
Sbjct: 141 DRWIMDE 147

[Close]

BLAST of Tan0007076 vs. NCBI nr
Match: VFQ91828.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 59/172 (34.30%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 23  KKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSNNDGDWITNE 82
           K++  L+++++ YWRQRA++ WL  G+RNT++FH  AS RR+KN+I+ L +++G+W    
Sbjct: 335 KEIDSLMDKNDCYWRQRAKQHWLSEGDRNTRFFHNYASHRRRKNYIRKLRDSNGNWHEGS 394

Query: 83  VDMGRLAISYFANLF-----------------KVNVSDPETTEEIICSIPQTVSEEILRD 142
            ++ +L   ++++LF                   NV+        +   P ++   + + 
Sbjct: 395 -NLTKLVFDFYSDLFVCAGPRDGQRLSFRRIRDFNVAMIGKQGWRLIVNPDSLVARVFKA 454

Query: 143 RYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMDDPW 178
           RY+  G FLN  LGS+PSF WRSIL G +L + G   +IG G    I D PW
Sbjct: 455 RYYSKGDFLNAGLGSSPSFVWRSILEGRNLIINGIGRRIGDGRDTLIWDTPW 505

[Close]

BLAST of Tan0007076 vs. NCBI nr
Match: PWA52122.1 (hypothetical protein CTI12_AA457560 [Artemisia annua])

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-19
Identity = 71/258 (27.52%), Postives = 109/258 (42.25%), Query Frame = 0


Query: 2   KEAEIKILESDL---TQEKEETWNKKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIR 61
           K+  + IL+S     T  +++   + + ELL  + L W+QR+R  WL  G++NT++FH R
Sbjct: 198 KQRSLYILQSRFDASTWLEQQQLREGIKELLTREELMWKQRSRIQWLSEGDKNTRFFHSR 257

Query: 62  ASTRRKKNHIQGLSNNDGDWITNEVDMGRLAISYFANLFKVNVSDPETTEEIICSI---- 121
           AS RRK+N I  L + DG WI NE D+  L   YF++LF  ++  P+  + ++  I    
Sbjct: 258 ASNRRKRNSILRLKDQDGRWIDNEEDVRSLVARYFSDLFSTSL--PQDCDSVVKDINKSL 317

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 318 TETDLISLEKQVTSTEWGDGVKQNPIRWCSWERMCVSKFRGGIGFRHLGLFNKSLLAKQV 377

Query: 182 ------PQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGY 187
                 P T++ ++L+ RYF    F +  +G  PS+ WRS +   DLF KG +W IG G 
Sbjct: 378 WRLIISPTTLAGKVLKARYFPRTSFFDAKVGYRPSYIWRSFIAVKDLFHKGCKWNIGDGR 437

[Close]

BLAST of Tan0007076 vs. NCBI nr
Match: KAB5545180.1 (hypothetical protein DKX38_013292 [Salix brachista])

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-18
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 28  LLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSNNDGDWITNEVDMGR 87
           LL+++ L+W+Q++R  WL+ G+RNT +FH+    RR+KN I+GL N +GDW+++   M  
Sbjct: 306 LLDQEELFWKQKSRNSWLKEGDRNTHFFHLSTIIRRRKNKIEGLQNTNGDWVSDMCGMKD 365

Query: 88  LAISYFANLFK-------VNVSD---PETTEEIICSIPQTVSEEILRDRYFQTGKFLNGT 147
           + ++YF  LF         N++    P+  E  +  +   V+ E +    F  G      
Sbjct: 366 IVVNYFQELFSNSEMSGDYNLTPQLFPKLLEADLDGLSSDVTNEEIHQNLFSIGGL---- 425

Query: 148 LGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMDDPWFT 180
              N S  WR +L+G      G RW+IGSG  V    D W +
Sbjct: 426 --KNSSSVWRGVLYGSKALNHGIRWRIGSGDDVLFWTDNWLS 461

[Close]

BLAST of Tan0007076 vs. NCBI nr
Match: KAG7572583.1 (Ribonuclease H-like superfamily [Arabidopsis suecica])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-18
Identity = 59/210 (28.10%), Postives = 104/210 (49.52%), Query Frame = 0


Query: 3   EAEIKILESDLTQEKEE--TWNKKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIRAS 62
           ++E+ + + D  + +EE      ++ E   ++ LYW Q++R   +Q G+ N+K+FH    
Sbjct: 85  KSELLLAQRDDLRPREEITELTLRLKEAYRDEELYWHQKSRSFSMQLGDNNSKYFHALTK 144

Query: 63  TRRKKNHIQGLSNNDGDWITNEVDMGRLAISYFANLFKVNVSDPETTEEIICSIPQTVSE 122
            RR +N I GL + +G W   + D+  +A+SYF  LF    + PE  EE +  +   +++
Sbjct: 145 QRRARNRITGLHDENGIWSAEDKDIQNIAVSYFRELF--TTTKPEAFEESLAEVQTLITD 204

Query: 123 -------------EILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSG 182
                        E+ + RYF+    L      +PS+ WRSI     L  KG   ++GSG
Sbjct: 205 QINNFLTAPATECEVFKGRYFRKSNPLENIKSYSPSYGWRSICSARSLVNKGLIKRVGSG 264

Query: 183 YQVNIMDDPW----FTSEGREHPTVVTPNL 194
             +++ +DPW    F    + + +V  P+L
Sbjct: 265 TSISVWEDPWIPAQFPRPAKSNGSVADPSL 292

[Close]

BLAST of Tan0007076 vs. NCBI nr
Match: PWA48861.1 (reverse transcriptase [Artemisia annua])

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-18
Identity = 60/192 (31.25%), Postives = 93/192 (48.44%), Query Frame = 0


Query: 14  TQEKEETWNKKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSN 73
           T+ K+    K++ ELL  + L W+Q +R  WL+ G++NT++FH  AS R+++N I  L  
Sbjct: 134 TRAKQRALRKQIKELLTHEELMWKQHSRIQWLREGDKNTRFFHTCASNRQRRNSILRLKG 193

Query: 74  NDGDWITNEVDMGRLAISYFANLFKVNVSDPETTEEIICSIPQ--------------TVS 133
            DG W+    ++  L  SYF+ LF  + S P+  E ++  I +              T S
Sbjct: 194 PDGRWVEELNEVCNLVSSYFSELF--SSSSPQGYEFVVKDIDRRLTENERQALERRVTSS 253

Query: 134 EEI--------------LRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIG 178
           E++              L+ RY     F +  +G  PS+ W S L   D+  KG +W IG
Sbjct: 254 EQVWRLITSLTTLAARTLKARYCPRSSFFDAKIGYRPSYIWHSFLSVKDIVRKGCKWNIG 313

[Close]

BLAST of Tan0007076 vs. ExPASy TrEMBL
Match: A0A484MV31 (CCHC-type domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS33604 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 59/172 (34.30%), Postives = 96/172 (55.81%), Query Frame = 0


Query: 23  KKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSNNDGDWITNE 82
           K++  L+++++ YWRQRA++ WL  G+RNT++FH  AS RR+KN+I+ L +++G+W    
Sbjct: 335 KEIDSLMDKNDCYWRQRAKQHWLSEGDRNTRFFHNYASHRRRKNYIRKLRDSNGNWHEGS 394

Query: 83  VDMGRLAISYFANLF-----------------KVNVSDPETTEEIICSIPQTVSEEILRD 142
            ++ +L   ++++LF                   NV+        +   P ++   + + 
Sbjct: 395 -NLTKLVFDFYSDLFVCAGPRDGQRLSFRRIRDFNVAMIGKQGWRLIVNPDSLVARVFKA 454

Query: 143 RYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMDDPW 178
           RY+  G FLN  LGS+PSF WRSIL G +L + G   +IG G    I D PW
Sbjct: 455 RYYSKGDFLNAGLGSSPSFVWRSILEGRNLIINGIGRRIGDGRDTLIWDTPW 505

[Close]

BLAST of Tan0007076 vs. ExPASy TrEMBL
Match: A0A803QGC3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.6e-20
Identity = 67/206 (32.52%), Postives = 93/206 (45.15%), Query Frame = 0


Query: 17  KEETWNKKMVELLEED--------NLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHI 76
           K E W  K    LE+D         +YW+QR++  WL+ G++NTK+FH +AS RRKKN I
Sbjct: 479 KVEDWIVK--NRLEQDLNCLEAKHEMYWKQRSQALWLKHGDKNTKYFHFKASNRRKKNTI 538

Query: 77  QGLSNNDGDWITNEVDMGRLAISYFANLFKVNVSDPETTEEI------------------ 136
           +GL + +  W T   D+  +A SYF  LF  +    E  + +                  
Sbjct: 539 EGLYDANQQWKTKTKDLELIATSYFQQLFTTSNKGIELEDTLRRCVPNRKLCKLKEQGGM 598

Query: 137 -------------------ICSIPQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILW 178
                              I + P  +  +IL+  YF    FL    G   S  W SILW
Sbjct: 599 GFRNMEDFNKALLAKQGWKILTYPDCLLSKILKALYFPKESFLVAKPGHYGSSIWSSILW 658

[Close]

BLAST of Tan0007076 vs. ExPASy TrEMBL
Match: A0A2U1LSZ3 (RNase H domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA457560 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 71/258 (27.52%), Postives = 109/258 (42.25%), Query Frame = 0


Query: 2   KEAEIKILESDL---TQEKEETWNKKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIR 61
           K+  + IL+S     T  +++   + + ELL  + L W+QR+R  WL  G++NT++FH R
Sbjct: 198 KQRSLYILQSRFDASTWLEQQQLREGIKELLTREELMWKQRSRIQWLSEGDKNTRFFHSR 257

Query: 62  ASTRRKKNHIQGLSNNDGDWITNEVDMGRLAISYFANLFKVNVSDPETTEEIICSI---- 121
           AS RRK+N I  L + DG WI NE D+  L   YF++LF  ++  P+  + ++  I    
Sbjct: 258 ASNRRKRNSILRLKDQDGRWIDNEEDVRSLVARYFSDLFSTSL--PQDCDSVVKDINKSL 317

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 318 TETDLISLEKQVTSTEWGDGVKQNPIRWCSWERMCVSKFRGGIGFRHLGLFNKSLLAKQV 377

Query: 182 ------PQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGY 187
                 P T++ ++L+ RYF    F +  +G  PS+ WRS +   DLF KG +W IG G 
Sbjct: 378 WRLIISPTTLAGKVLKARYFPRTSFFDAKVGYRPSYIWRSFIAVKDLFHKGCKWNIGDGR 437

[Close]

BLAST of Tan0007076 vs. ExPASy TrEMBL
Match: A0A5N5LR83 (RNase H domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_013292 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.6e-19
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = 0


Query: 28  LLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSNNDGDWITNEVDMGR 87
           LL+++ L+W+Q++R  WL+ G+RNT +FH+    RR+KN I+GL N +GDW+++   M  
Sbjct: 306 LLDQEELFWKQKSRNSWLKEGDRNTHFFHLSTIIRRRKNKIEGLQNTNGDWVSDMCGMKD 365

Query: 88  LAISYFANLFK-------VNVSD---PETTEEIICSIPQTVSEEILRDRYFQTGKFLNGT 147
           + ++YF  LF         N++    P+  E  +  +   V+ E +    F  G      
Sbjct: 366 IVVNYFQELFSNSEMSGDYNLTPQLFPKLLEADLDGLSSDVTNEEIHQNLFSIGGL---- 425

Query: 148 LGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMDDPWFT 180
              N S  WR +L+G      G RW+IGSG  V    D W +
Sbjct: 426 --KNSSSVWRGVLYGSKALNHGIRWRIGSGDDVLFWTDNWLS 461

[Close]

BLAST of Tan0007076 vs. ExPASy TrEMBL
Match: A0A803LSC1 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 51/172 (29.65%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 22  NKKMVELLEEDNLYWRQRAREDWLQWGERNTKWFHIRASTRRKKNHIQGLSNNDGDWITN 81
           ++++ EL   +  YW  RAR + L+ G++NT +FH +AS RR +N I GL + +GDW   
Sbjct: 133 SEEIDELRRMEESYWYARARSNELRDGDKNTAYFHRKASNRRSRNRINGLYDKNGDWQMG 192

Query: 82  EVDMGRLAISYFANLFKVNVSDPETTEEIICSIPQ------------TVSEEILRDRYFQ 141
              +  +AI YF  LF      P   + ++  + Q            +++ ++++  YF+
Sbjct: 193 SQQIQNIAIEYFEALFASGY--PTDFDSVVSGLEQRITGAMNAINIDSLTHKVMKSHYFK 252

Query: 142 TGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMDDPWFTSE 182
           +   +    G +PSF WRSI     +F  G  WK+G G  + + +D W   E
Sbjct: 253 SSDVIRANRGHDPSFVWRSIWNAKGVFPDGMVWKVGDGRDIKVWEDNWLVKE 302

[Close]

BLAST of Tan0007076 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 54.7 bits (130), Expect = 9.8e-08
Identity = 23/67 (34.33%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 115 PQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNIMD 174
           P T+   +LR RYF     +  ++G+ PS+ WRSI+ G +L  +G    IG G    +  
Sbjct: 81  PHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHTKVWL 140

Query: 175 DPWFTSE 182
           D W   E
Sbjct: 141 DRWIMDE 147

[Close]

BLAST of Tan0007076 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.4e-07
Identity = 23/69 (33.33%), Postives = 37/69 (53.62%), Query Frame = 0


Query: 113 SIPQTVSEEILRDRYFQTGKFLNGTLGSNPSFTWRSILWGWDLFMKGYRWKIGSGYQVNI 172
           S P+++  ++ + RYF     LN  LGS PSF W+SI    ++  +G R  +G+G  + I
Sbjct: 78  SRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIII 137

Query: 173 MDDPWFTSE 182
               W  S+
Sbjct: 138 WRHKWLDSK 146

The following BLAST results are available for this feature:

BLAST of Tan0007076 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	1.4e-06	34.33	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Tan0007076 vs. NCBI nr


Match Name	E-value	Identity	Description
VFQ91828.1	2.1e-20	34.30	unnamed protein product [Cuscuta campestris]	[more]
PWA52122.1	2.3e-19	27.52	hypothetical protein CTI12_AA457560 [Artemisia annua]	[more]
KAB5545180.1	1.2e-18	32.72	hypothetical protein DKX38_013292 [Salix brachista]	[more]
KAG7572583.1	1.5e-18	28.10	Ribonuclease H-like superfamily [Arabidopsis suecica]	[more]
PWA48861.1	9.8e-18	31.25	reverse transcriptase [Artemisia annua]	[more]

BLAST of Tan0007076 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A484MV31	1.0e-20	34.30	CCHC-type domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCU...	[more]
A0A803QGC3	6.6e-20	32.52	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2U1LSZ3	1.1e-19	27.52	RNase H domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA457560 ...	[more]
A0A5N5LR83	5.6e-19	32.72	RNase H domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_013292 ...	[more]
A0A803LSC1	2.1e-18	29.65	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]

BLAST of Tan0007076 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00310.1	9.8e-08	34.33	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	6.4e-07	33.33	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 15..122
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 15..122
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 117..179
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 117..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0007076.1	Tan0007076.1	mRNA