Tan0006977 (gene) Snake gourd v1

Overview


Name	Tan0006977
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	VQ motif-containing protein
Location	LG08: 59467668 .. 59467928 (-)
RNA-Seq Expression	Tan0006977
Synteny	Tan0006977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGATTATGAACAATCAAGCTTTGTTGCCCAACTCCGCTCGTTCGGCGGCCATGGTTGTCCATAGATCTTCACACGTCATTTCCAAGCCCAAACCCAAAATTCGTATAATTCACATCTTCGTGCCGGAGATCATCAAAACCAACGTCGCCAATTTCTGCGAGCTCGTTCAGAGGCTCATTGGAAAGCCGAAGGCGATGATTGATTCGGAAGAAATTCCCGTGGAGACGGAGGCGGCGGCGCGTGCCGGAGGGTGA

mRNA sequence

ATGGACGCGATTATGAACAATCAAGCTTTGTTGCCCAACTCCGCTCGTTCGGCGGCCATGGTTGTCCATAGATCTTCACACGTCATTTCCAAGCCCAAACCCAAAATTCGTATAATTCACATCTTCGTGCCGGAGATCATCAAAACCAACGTCGCCAATTTCTGCGAGCTCGTTCAGAGGCTCATTGGAAAGCCGAAGGCGATGATTGATTCGGAAGAAATTCCCGTGGAGACGGAGGCGGCGGCGCGTGCCGGAGGGTGA

Coding sequence (CDS)

ATGGACGCGATTATGAACAATCAAGCTTTGTTGCCCAACTCCGCTCGTTCGGCGGCCATGGTTGTCCATAGATCTTCACACGTCATTTCCAAGCCCAAACCCAAAATTCGTATAATTCACATCTTCGTGCCGGAGATCATCAAAACCAACGTCGCCAATTTCTGCGAGCTCGTTCAGAGGCTCATTGGAAAGCCGAAGGCGATGATTGATTCGGAAGAAATTCCCGTGGAGACGGAGGCGGCGGCGCGTGCCGGAGGGTGA

Protein sequence

MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKPKAMIDSEEIPVETEAAARAGG

Homology

[Close]

BLAST of Tan0006977 vs. ExPASy Swiss-Prot
Match: Q9M2P8 (VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-11
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 18 AAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKPKAMIDSEEIP 76
          +++ VH+ S+ I+K KPKIRIIHIF PEIIKT+VANF ELVQ L GKP     S+  P
Sbjct: 14 SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPDDQRTSKAKP 71

[Close]

BLAST of Tan0006977 vs. ExPASy Swiss-Prot
Match: O64868 (VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 17 SAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKP 66
          S+ + ++R+S VISK KPKIRIIHIF PE+IKT+V NF  LVQ L GKP
Sbjct: 14 SSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKP 62

[Close]

BLAST of Tan0006977 vs. ExPASy Swiss-Prot
Match: O48522 (VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-09
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 20 MVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGK 65
          + +H+ S  ++K KPKIRIIHIF PEIIKT+VANF E+VQ L GK
Sbjct: 17 IAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGK 61

[Close]

BLAST of Tan0006977 vs. NCBI nr
Match: XP_022935342.1 (VQ motif-containing protein 25-like [Cucurbita moschata])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR AAM VH +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAMIDSEEIPVETEAAARA 85
          L GKP A  + + +P +    A A
Sbjct: 61 LTGKP-ATAEEKIVPPQIPPVAVA 83

[Close]

BLAST of Tan0006977 vs. NCBI nr
Match: XP_022983122.1 (VQ motif-containing protein 25-like [Cucurbita maxima])

HSP 1 Score: 97.4 bits (241), Expect = 6.2e-17
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR  AM +H +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAMIDSEEIPVETEAAARA 85
          L GKP A  + + +P +   AA A
Sbjct: 61 LTGKP-ATAEEKIVPPQIPPAAVA 83

[Close]

BLAST of Tan0006977 vs. NCBI nr
Match: KAG7017559.1 (VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 8.1e-17
Identity = 54/84 (64.29%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  + LL NSAR AAM VH +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRTLLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAMIDSEEIPVETEAAARA 85
          L GKP A  + + +P +    A A
Sbjct: 61 LTGKP-ATAEEKIVPPQIPPVAVA 83

[Close]

BLAST of Tan0006977 vs. NCBI nr
Match: XP_023528893.1 (VQ motif-containing protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 8.1e-17
Identity = 54/84 (64.29%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  + LL NSAR AAM VH +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRTLLQNSARPAAMAVHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAMIDSEEIPVETEAAARA 85
          L GKP A  + + +P +    A A
Sbjct: 61 LTGKP-ATAEEKIVPPQIPPVAVA 83

[Close]

BLAST of Tan0006977 vs. NCBI nr
Match: XP_038906267.1 (VQ motif-containing protein 25 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 58/87 (66.67%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 1  MDAIMNNQA--LLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELV 60
          MDAI+  Q   LLPNSA  AAM +H +SH ISKPKPKIRIIHIF PEIIKT+VANF ELV
Sbjct: 1  MDAILKKQRRHLLPNSAHPAAMALHTASHSISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61 QRLIGKP---KAMIDSEEIPVETEAAA 83
          QRL GKP   +  I  EEI  ET A A
Sbjct: 61 QRLTGKPATAEEKILPEEIQPETVAVA 87

[Close]

BLAST of Tan0006977 vs. ExPASy TrEMBL
Match: A0A6J1F598 (VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442255 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR AAM VH +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAMIDSEEIPVETEAAARA 85
          L GKP A  + + +P +    A A
Sbjct: 61 LTGKP-ATAEEKIVPPQIPPVAVA 83

[Close]

BLAST of Tan0006977 vs. ExPASy TrEMBL
Match: A0A6J1IYE1 (VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.0e-17
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MDAIMNNQALLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQR 60
          M+AIM  +ALL NSAR  AM +H +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQR
Sbjct: 1  MEAIMKKRALLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQR 60

Query: 61 LIGKPKAMIDSEEIPVETEAAARA 85
          L GKP A  + + +P +   AA A
Sbjct: 61 LTGKP-ATAEEKIVPPQIPPAAVA 83

[Close]

BLAST of Tan0006977 vs. ExPASy TrEMBL
Match: A0A5A7TRB0 (VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005450 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MDAIMNNQA----LLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCE 60
          MDAI+ NQ     LLP S R + M +H +SH ISKPKPKIRIIHIF PEIIKT+VANF E
Sbjct: 1  MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61 LVQRLIGKPKAMIDSEE--IPVETEAAA 83
          LVQRL GKP+A+   E+  +P +  AAA
Sbjct: 61 LVQRLTGKPEAITTQEDKILPPQIPAAA 88

[Close]

BLAST of Tan0006977 vs. ExPASy TrEMBL
Match: A0A1S3B6P9 (VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1  MDAIMNNQA----LLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCE 60
          MDAI+ NQ     LLP S R + M +H +SH ISKPKPKIRIIHIF PEIIKT+VANF E
Sbjct: 1  MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61 LVQRLIGKPKAMIDSEE--IPVETEAAA 83
          LVQRL GKP+A+   E+  +P +  AAA
Sbjct: 61 LVQRLTGKPEAITTQEDKILPPQIPAAA 88

[Close]

BLAST of Tan0006977 vs. ExPASy TrEMBL
Match: A0A0A0LBB1 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 10 LLPNSARSAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKPKAMI 69
          LLP SAR ++M +H +SH ISKPKPKIRIIHIF PEIIKT+VANF ELVQRL GKP+A  
Sbjct: 15 LLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPEATE 74

Query: 70 DSEEIPVETEAAA 83
          D + +P E   AA
Sbjct: 75 DGKILPPEIPPAA 87

[Close]

BLAST of Tan0006977 vs. TAIR 10
Match: AT3G58000.1 (VQ motif-containing protein )

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 0


Query: 18 AAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKPKAMIDSEEIP 76
          +++ VH+ S+ I+K KPKIRIIHIF PEIIKT+VANF ELVQ L GKP     S+  P
Sbjct: 14 SSIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPDDQRTSKAKP 71

[Close]

BLAST of Tan0006977 vs. TAIR 10
Match: AT2G44340.1 (VQ motif-containing protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 17 SAAMVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKP 66
          S+ + ++R+S VISK KPKIRIIHIF PE+IKT+V NF  LVQ L GKP
Sbjct: 14 SSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKP 62

[Close]

BLAST of Tan0006977 vs. TAIR 10
Match: AT2G42140.1 (VQ motif-containing protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-10
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 20 MVVHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGK 65
          + +H+ S  ++K KPKIRIIHIF PEIIKT+VANF E+VQ L GK
Sbjct: 17 IAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGK 61

[Close]

BLAST of Tan0006977 vs. TAIR 10
Match: AT3G60090.1 (VQ motif-containing protein )

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-09
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 22 VHRSSHVISKPKPKIRIIHIFVPEIIKTNVANFCELVQRLIGKPK 67
          ++++S +I+K KPKIRIIHIF PEII T+V NF  LVQ L GKP+
Sbjct: 31 MNKNSQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKPE 75

The following BLAST results are available for this feature:

BLAST of Tan0006977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2P8	5.3e-11	60.34	VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1	[more]
O64868	1.7e-09	65.31	VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1	[more]
O48522	3.8e-09	64.44	VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1	[more]

BLAST of Tan0006977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935342.1	2.8e-17	65.48	VQ motif-containing protein 25-like [Cucurbita moschata]	[more]
XP_022983122.1	6.2e-17	64.29	VQ motif-containing protein 25-like [Cucurbita maxima]	[more]
KAG7017559.1	8.1e-17	64.29	VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_023528893.1	8.1e-17	64.29	VQ motif-containing protein 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_038906267.1	1.1e-16	66.67	VQ motif-containing protein 25 [Benincasa hispida]	[more]

BLAST of Tan0006977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F598	1.4e-17	65.48	VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11144225...	[more]
A0A6J1IYE1	3.0e-17	64.29	VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 ...	[more]
A0A5A7TRB0	1.1e-16	61.36	VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B6P9	1.1e-16	61.36	VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4...	[more]
A0A0A0LBB1	3.3e-16	67.12	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=...	[more]

BLAST of Tan0006977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58000.1	3.8e-12	60.34	VQ motif-containing protein	[more]
AT2G44340.1	1.2e-10	65.31	VQ motif-containing protein	[more]
AT2G42140.1	2.7e-10	64.44	VQ motif-containing protein	[more]
AT3G60090.1	3.9e-09	62.22	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 41..61 e-value: 1.0E-4 score: 21.7
IPR039834	VQ motif-containing protein 17/25	PANTHER	PTHR33143:SF3	VQ MOTIF-CONTAINING PROTEIN 17-RELATED	coord: 6..69
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 6..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006977.1	Tan0006977.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus