Tan0006905 (gene) Snake gourd v1

Overview


Name	Tan0006905
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Aconitate hydratase
Location	LG01: 3510204 .. 3510913 (-)
RNA-Seq Expression	Tan0006905
Synteny	Tan0006905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCTCAGAGAGAGAGAGAGAGAGATTCATGAGAATGGGTTTAAAGAGAGAGTCCATATTTTTCAGTGTTATGGTTCTTCTTCTTCTCCAAATGGCAACAGGGAGACTCATCCAAAATACTTTACCTTATGCAGATCGTAAGCCCCATATGCCTTTTACCTTTTTTTTTTTTTTTTTTTTTTTTAATTTTATTTATTTAATCTCTTTATTGCTTTCCCCATAAACTTCCTTTTTCCCCCTTAAAAACACACTCCAATTTATCTTCTTTAAAACCATGCATATATATTATACTGAATTTCAAGTTCTTGCTATAATAATTCAATCCTGGAAATTCAGACGAGAAAATTAGAAAAAAGATAAAAAAAAAATAGTATTTAATTTATGTATATTTCTTAAATACTATTAATGATGAGTAGTGTTTTTGTGGAGCAGTTGAGAGGGTCAGTATGAGTGAGAAGAACGTGCTCGGAAGTCGGCTTCTGAATTCAGCTCTGCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAAGAAGGCCGCCGTCCGCAGCTCCGGCTACCGGCCATGACGGTTGTGGAAACTTGGTTATGATCTTATTTCCTCCGTTGAGTGAAAATTTCAATGTGCTGTGAGAAAGTGTACTGATCATGTTGTGTGGCTAAGGCATTATATATGAATAAACTTTGTGACTTCTTGAGTGAGAAA

mRNA sequence

CATCCTCAGAGAGAGAGAGAGAGAGATTCATGAGAATGGGTTTAAAGAGAGAGTCCATATTTTTCAGTGTTATGGTTCTTCTTCTTCTCCAAATGGCAACAGGGAGACTCATCCAAAATACTTTACCTTATGCAGATCTTGAGAGGGTCAGTATGAGTGAGAAGAACGTGCTCGGAAGTCGGCTTCTGAATTCAGCTCTGCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAAGAAGGCCGCCGTCCGCAGCTCCGGCTACCGGCCATGACGGTTGTGGAAACTTGGTTATGATCTTATTTCCTCCGTTGAGTGAAAATTTCAATGTGCTGTGAGAAAGTGTACTGATCATGTTGTGTGGCTAAGGCATTATATATGAATAAACTTTGTGACTTCTTGAGTGAGAAA

Coding sequence (CDS)

ATGAGAATGGGTTTAAAGAGAGAGTCCATATTTTTCAGTGTTATGGTTCTTCTTCTTCTCCAAATGGCAACAGGGAGACTCATCCAAAATACTTTACCTTATGCAGATCTTGAGAGGGTCAGTATGAGTGAGAAGAACGTGCTCGGAAGTCGGCTTCTGAATTCAGCTCTGCCCAGAGGAGGCAACTATATTGACAACCCACAGGCGGCGAAGAAGGCCGCCGTCCGCAGCTCCGGCTACCGGCCATGA

Protein sequence

MRMGLKRESIFFSVMVLLLLQMATGRLIQNTLPYADLERVSMSEKNVLGSRLLNSALPRGGNYIDNPQAAKKAAVRSSGYRP

Homology

[Close]

BLAST of Tan0006905 vs. NCBI nr
Match: KAG6600180.1 (hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-16
Identity = 50/81 (61.73%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 3  MGLKRESIFFSVMVLLLLQMATGRLIQ-NTLPYADLERVSMSEKNVLGSRLLNSALPRGG 62
          MGLKR  I  SVMVL+L+ MATGR ++  TLP AD E ++MS +   G++LL+SA PRGG
Sbjct: 1  MGLKRAPILLSVMVLVLVHMATGRPVRTTTLPIADFETMNMSGETAFGTQLLSSARPRGG 60

Query: 63 NYIDNPQAAKKAAVRSSGYRP 83
          NYIDNPQAA KAA+++SGY P
Sbjct: 61 NYIDNPQAANKAAIQTSGYHP 81

[Close]

BLAST of Tan0006905 vs. NCBI nr
Match: KGN53132.1 (hypothetical protein Csa_014795 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 1.5e-15
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3  MGLKRESIFFSVMVLLLL-QMATGR-LIQNTLPYADLERVSMSEKNVLGSRLLNSALPRG 62
          MGLKRESIFFSVM+LLLL  MATGR L  +T  +AD E ++M  KN  GSR L+SALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 63 GNYIDNPQAAKKAAVRSSGYRP 83
          GNYI+ P AA+KAAV  +GY+P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]

BLAST of Tan0006905 vs. NCBI nr
Match: KAA0044639.1 (Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-11
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 22 MATGRLIQNTLPYADLERVSMSEKNVLGSRLLNSALPRGGNYIDNPQAAKKAAVRSSGYR 81
          MATGRLI +T  + D E ++M  KN  GSRLL++ALPRGGNYI+NP AA+KAAVR SGY+
Sbjct: 1  MATGRLIYSTSLHGDFETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQ 60

Query: 82 P 83
          P
Sbjct: 61 P 61

[Close]

BLAST of Tan0006905 vs. ExPASy TrEMBL
Match: A0A0A0KXI8 (Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.1e-16
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3  MGLKRESIFFSVMVLLLL-QMATGR-LIQNTLPYADLERVSMSEKNVLGSRLLNSALPRG 62
          MGLKRESIFFSVM+LLLL  MATGR L  +T  +AD E ++M  KN  GSR L+SALPRG
Sbjct: 1  MGLKRESIFFSVMLLLLLSNMATGRVLFHSTSLHADFETMNMDGKNRDGSRFLSSALPRG 60

Query: 63 GNYIDNPQAAKKAAVRSSGYRP 83
          GNYI+ P AA+KAAV  +GY+P
Sbjct: 61 GNYINKPHAAEKAAVGRAGYQP 82

[Close]

BLAST of Tan0006905 vs. ExPASy TrEMBL
Match: A0A5A7TTS9 (Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00860 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 22 MATGRLIQNTLPYADLERVSMSEKNVLGSRLLNSALPRGGNYIDNPQAAKKAAVRSSGYR 81
          MATGRLI +T  + D E ++M  KN  GSRLL++ALPRGGNYI+NP AA+KAAVR SGY+
Sbjct: 1  MATGRLIYSTSLHGDFETMNMDGKNRDGSRLLSTALPRGGNYINNPHAAEKAAVRRSGYQ 60

Query: 82 P 83
          P
Sbjct: 61 P 61

The following BLAST results are available for this feature:

BLAST of Tan0006905 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006905 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600180.1	1.7e-16	61.73	hypothetical protein SDJN03_05413, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN53132.1	1.5e-15	65.85	hypothetical protein Csa_014795 [Cucumis sativus]	[more]
KAA0044639.1	1.3e-11	65.57	Aconitate hydratase [Cucumis melo var. makuwa] >TYK16949.1 Aconitate hydratase [...	[more]

BLAST of Tan0006905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXI8	7.1e-16	65.85	Aconitate hydratase OS=Cucumis sativus OX=3659 GN=Csa_4G017200 PE=4 SV=1	[more]
A0A5A7TTS9	6.2e-12	65.57	Aconitate hydratase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G...	[more]

BLAST of Tan0006905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006905.1	Tan0006905.1	mRNA