Tan0006777 (gene) Snake gourd v1

Overview


Name	Tan0006777
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription initiation factor IIA subunit 2
Location	LG01: 103527213 .. 103529108 (-)
RNA-Seq Expression	Tan0006777
Synteny	Tan0006777

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTCTTCGCTCGCAAGAAGCTTTGGAGCTAACGTGAAACCAGTTAGAATCAAGAATCCAGAAGCATCACAAACTCACCAGCAATCTATAGCTACCGTTCATTGCTTGTACTTTCTCTCTTCAATTTTTTTTTTATTCCTTTTCGAATTGATCTCTCGCTTTGATTTCCAAGATTTTGCCAGCTTTCTCGAATTCTGACGCTATGTTTCAAAATTTTCTTCAGTTTTATCAATTCCGAATGTGTATTTTGAACTAAATTTGATATCTTAGCTAAAGAACTTCCATATTTTGCAGATCTTGATTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGACAAGGTACAACCAAAGTTGGTTTAGAGATGTGTTTATGTGTATATTTGGGATTTGTTTCCGGAATTAAGGTCTTGTTTGATTTAATTTCCTACTGCTTTTGACTTTTGTTGCAGTCCACGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGTATCTTTGTTCGGCTTATGAATTTGAAGAATCTTTGAACGCCAAATATTTATGTTTCTTAATAAAGTCGAACATTATAAAATTGAAACGTGTTTTTGCTGATAAGAGGAATTGGTTGTGTTTGCCTGTTCTGAGATTGCTCTGTTTGTGTAGTGCACGTCTAGCCTTGAGTCAAATTGTTCTATCTGTAACGCGTCTTTTCATCGAATGTATAGTAGAAATTTTCCCATGGTCTTTTGGTTGCCTCGAAGTGAATGAAGAACCATGGTCAAGAATTTGGCTCAAGGCATAAAAATATTTGTGGAACTTGCTCATTCTATTCCTTGTTTTGTTTTCCATTGATTCTTGAAGCGTTTTCCAGTATAAAACATTGCACCTTGAATAAGTTTCTTTGGAATAAACTTTGTAATTCTTTTTCTATTGGAATCTGGGGATAAGGTAATTGATGTAATTAGGGAGTTAGCTTAGCCCTGGTATAATATCAGGTTCTACTACGAGTATTCAATCCAATGGTTGTCTGATTTTTTCATGATACTCTGTTGAAAGTTCATTGTGAAAGAAATGATGGAATCACAATCAGACCTTAATATTGAATGAGTCATTATACAGTAAACGGGCATGACATTTTTTTGAAGTCATTCCGGCCATCTCTTTTTGACTCTTTCTTTTACAAGACCAATCAATTTGTTTTTTCCTCCTCCATTTTGCCAAGTGAATTTAGTTGATCATAAGGCTCCTCTAACACTTACTGTATCGTGATTTCTGAACCTTTTCGTCGTCCTGCTTTGCAACAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGACATTCATTTTACAGGATGCAACGTTTAAGAACGAGAATTCTCAAGAGAATGTTGAAAGAATTAAAATAGTAGCATGTGACTCGGAGTTACTCTCACAATAGGCTTTTTCAAACATCAGTTTATTAGATGAAATTTGCATAATTATTTGCTGATGATCGAGGGAAATAGTCACGCTTAGGAAATGTGCCATCAAGGTATCGTCACAAGTTGCAAGTTTGGAAAAGATTCAAACGTGGTTCTGTGAAGTCATCCACCTGAACATCAGAAATTTAATTTCACATTGACATTACATTTGACTGTAATTGGCTTCCTCAGCAAATGTACAGCTGATTTCATAACAATTATACAACCCTTATAGTTTAATGATGATAAAACATGAGATATCTGTTTTAATACTATTCTTTTAATCTTAATTTGTATTAGTTTCTTTGAAACTCAAAACGTATTACAAAGTAC

mRNA sequence

AAATTTCTTCGCTCGCAAGAAGCTTTGGAGCTAACGTGAAACCAGTTAGAATCAAGAATCCAGAAGCATCACAAACTCACCAGCAATCTATAGCTACCGTTCATTGCTTATCTTGATTTTCGAAGAAGAATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGACAAGTCCACGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGACATTCATTTTACAGGATGCAACGTTTAAGAACGAGAATTCTCAAGAGAATGTTGAAAGAATTAAAATAGTAGCATGTGACTCGGAGTTACTCTCACAATAGGCTTTTTCAAACATCAGTTTATTAGATGAAATTTGCATAATTATTTGCTGATGATCGAGGGAAATAGTCACGCTTAGGAAATGTGCCATCAAGGTATCGTCACAAGTTGCAAGTTTGGAAAAGATTCAAACGTGGTTCTGTGAAGTCATCCACCTGAACATCAGAAATTTAATTTCACATTGACATTACATTTGACTGTAATTGGCTTCCTCAGCAAATGTACAGCTGATTTCATAACAATTATACAACCCTTATAGTTTAATGATGATAAAACATGAGATATCTGTTTTAATACTATTCTTTTAATCTTAATTTGTATTAGTTTCTTTGAAACTCAAAACGTATTACAAAGTAC

Coding sequence (CDS)

ATGGCAACGTTTGAACTCTACCGCAGATCGACGATCGGAATGTGTTTGACTGAAACTTTGGACGAAATGGTCCAGAATGGTACTCTTAGTCCTGAGCTTGCTATTCAGGTTCTTGTCCAGTTCGACAAGTCCACGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGTGTCTATCAAGGGACATTTGCACACCTATCGATTCTGCGACAACGTTTGGACATTCATTTTACAGGATGCAACGTTTAAGAACGAGAATTCTCAAGAGAATGTTGAAAGAATTAAAATAGTAGCATGTGACTCGGAGTTACTCTCACAATAG

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ

Homology

[Close]

BLAST of Tan0006777 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 191.4 bits (485), Expect = 5.1e-48
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKS TEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDA FK+++ QENV R+KIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-46
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKS TEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE + E V ++KIVACDS+LLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-46
Identity = 91/106 (85.85%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKS TEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFIL +A+FKNE + E V ++KIVACDS+LLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-25
Identity = 51/96 (53.12%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKS TEAL  +V+S+++ KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDATFKNENSQENVERIKIVAC 100
            TYRFCD VWTFI+++ +F+ +N      +I+IVAC
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVAC 100

[Close]

BLAST of Tan0006777 vs. ExPASy Swiss-Prot
Match: Q54ND1 (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=44689 GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.1e-25
Identity = 56/101 (55.45%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIKGHL 63
           +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK+  EAL + VK+K + KG L
Sbjct: 8   YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67

Query: 64  HTYRFCDNVWTFILQDATFKNE-NSQENVERIKIVACDSEL 104
           HTYRFCD+VWTFIL++A FK E N    V+R+KIVACD+ +
Sbjct: 68  HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108

[Close]

BLAST of Tan0006777 vs. NCBI nr
Match: XP_022133819.1 (transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133827.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133836.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133845.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133853.1 transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_022133862.1 transcription initiation factor IIA subunit 2 [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 1.7e-48
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQENV RIKIVACDS+LLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Tan0006777 vs. NCBI nr
Match: XP_022936677.1 (transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678.1 transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022975864.1 transcription initiation factor IIA subunit 2 [Cucurbita maxima] >XP_023536591.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >XP_023536592.1 transcription initiation factor IIA subunit 2 [Cucurbita pepo subsp. pepo] >KAG7024584.1 Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. NCBI nr
Match: XP_004287436.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. vesca] >XP_004493830.1 transcription initiation factor IIA subunit 2 [Cicer arietinum] >XP_004493831.1 transcription initiation factor IIA subunit 2 [Cicer arietinum] >XP_027188445.1 transcription initiation factor IIA subunit 2 [Cicer arietinum])

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+SQENV R+KIVACDS+LLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLSQ 106

[Close]

BLAST of Tan0006777 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. NCBI nr
Match: KAG6608125.1 (Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKV+IK
Sbjct: 617 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 676

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACDS+LL+Q
Sbjct: 677 GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 722

[Close]

BLAST of Tan0006777 vs. ExPASy TrEMBL
Match: A0A6J1BWA2 (Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=LOC111006284 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 8.2e-49
Identity = 102/106 (96.23%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQENV RIKIVACDS+LLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQENVGRIKIVACDSKLLSQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.0e-48
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy TrEMBL
Match: A0A6J1ILT9 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111476437 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.0e-48
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy TrEMBL
Match: A0A1S2XSF2 (Transcription initiation factor IIA subunit 2 OS=Cicer arietinum OX=3827 GN=LOC101503374 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALE+QVKSKVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDA FKNE+SQENV R+KIVACDS+LLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLSQ 106

[Close]

BLAST of Tan0006777 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.0e-47
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKS TEALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDATFKNE+SQE V RIKIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-49
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKS TEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDA FK+++ QENV R+KIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]

BLAST of Tan0006777 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 191.4 bits (485), Expect = 3.6e-49
Identity = 94/106 (88.68%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSTTEALESQVKSKVSIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKS TEALESQVK+KVSIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDATFKNENSQENVERIKIVACDSELLSQ 107
           GHLHTYRFCDNVWTFILQDA FK+++ QENV R+KIVACDS+LL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:

BLAST of Tan0006777 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39236	5.1e-48	88.68	Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XZI2	6.2e-46	85.85	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3...	[more]
Q0DLD3	6.2e-46	85.85	Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX...	[more]
O74948	1.6e-25	53.13	Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra...	[more]
Q54ND1	6.1e-25	55.45	Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum OX=446...	[more]

BLAST of Tan0006777 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133819.1	1.7e-48	96.23	transcription initiation factor IIA subunit 2 [Momordica charantia] >XP_02213382...	[more]
XP_022936677.1	1.9e-47	94.34	transcription initiation factor IIA subunit 2 [Cucurbita moschata] >XP_022936678...	[more]
XP_004287436.1	2.4e-47	93.40	PREDICTED: transcription initiation factor IIA subunit 2 [Fragaria vesca subsp. ...	[more]
XP_022941425.1	4.2e-47	93.40	transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229...	[more]
KAG6608125.1	4.2e-47	93.40	Transcription initiation factor IIA subunit 2, partial [Cucurbita argyrosperma s...	[more]

BLAST of Tan0006777 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWA2	8.2e-49	96.23	Transcription initiation factor IIA subunit 2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1F935	9.0e-48	94.34	Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1ILT9	9.0e-48	94.34	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A1S2XSF2	1.2e-47	93.40	Transcription initiation factor IIA subunit 2 OS=Cicer arietinum OX=3827 GN=LOC1...	[more]
A0A6J1J100	2.0e-47	93.40	Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Tan0006777 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24440.1	3.6e-49	88.68	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]
AT4G24440.2	3.6e-49	88.68	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	PFAM	PF02268	TFIIA_gamma_N	coord: 4..49 e-value: 1.3E-21 score: 76.4
IPR015872	Transcription initiation factor IIA, gamma subunit, N-terminal	CDD	cd10145	TFIIA_gamma_N	coord: 4..49 e-value: 7.19179E-21 score: 76.4504
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 55..105 e-value: 1.9E-23 score: 84.0
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 52..101
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	PFAM	PF02751	TFIIA_gamma_C	coord: 60..101 e-value: 2.4E-22 score: 78.8
IPR015871	Transcription initiation factor IIA, gamma subunit, C-terminal	CDD	cd10014	TFIIA_gamma_C	coord: 57..101 e-value: 2.27177E-23 score: 82.6807
IPR003194	Transcription initiation factor IIA, gamma subunit	PIRSF	PIRSF009415	TFIIA_gamma_hum	coord: 1..106 e-value: 1.9E-48 score: 161.2
IPR003194	Transcription initiation factor IIA, gamma subunit	PANTHER	PTHR10966	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
IPR009083	Transcription factor IIA, alpha-helical domain	GENE3D	1.10.287.190		coord: 3..54 e-value: 2.2E-23 score: 83.9
None	No IPR available	PANTHER	PTHR10966:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2	coord: 1..106
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006777.1	Tan0006777.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003743	translation initiation factor activity