Tan0006570 (gene) Snake gourd v1

Overview
NameTan0006570
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG02: 1655924 .. 1658710 (+)
RNA-Seq ExpressionTan0006570
SyntenyTan0006570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCAGCTAGTGAGGTTCTAACCGAGGCGCGTCTATTGCTGGTTGAAAACTATTTCCAAACCCCCTCTTAGGCCTGGGTTTGGCCCAGGCCTTTGAGAATTTCTGGAAGGGCTCCCTTCTGGGTAAAGCCCTACAAATTTCAGTCCAAATTTTATAGAGCCATCACTCGGCTCATTGGGCTTGTGGTTATCAACGCGAGGCCCACGGTGAGCCCATTAAGCCCGGTGGAACTTAGGGGTTTAAATAACATGGCTATTCGATATTACACTTTCATGAGTTAAAAAAAAATTGCATAACTACTTTTTAGGGCCAAAATTCATTGGGTTAATTAATTAAAACCCAATTAATTCGTTAATTGACATCTATCAATTTCACATAATTCGTTCATGACTTCTTAGGTCTAAATTTAGTCTAAATACGACTAATATTTTTTTTGTGTGCATACTACATACACTCTTCATACTGGTACTTATTTATCGTAATTTTTATTTGATACCATGAAACAATTATAAATACGAACAATTGGTTCATAAATTGAGTTATAGACTTTGTTGATAAAAAAAAAAAAGAATATTTGCTATCCAGCATGAATATTTGCTGATGTTATAATTTCATTAGATAACCTGGATAATTCATCTTCAAATCTTAAAGACAAACATGTAATTTTTGACATCAAAAAGTTCAAATCTGAATGACCAAACTATATCCTCAGTTAGAAAAAAATTAATGCACTTACACATTATTACAAAGAGAATCTTACGTTAAATGACATTTATATTAATATACTATATTTAATGATAAACTATTTTTTACATCTATTACTATAAAACATGCATAGTTAAGATGTTAATTAATAAGTGGTTTAGACTTTCAAAATATTATTAAACTTGAAATGGGGTATATTTACAAATCTTTTTACCTTCCACTAATTTTGGAGAATTCCCGTTTAGACGGAAAACGGAGAGGGAGCGAGGACTATTTTTTTCCGATCGAGACGGTGAATATATTCCCCGTCTCCACCCAGATTTATTTATTTTCTAACATAAATATATATATATAAAATAAACCATAATTCTACCTTCTTATTAATATTATTTTATTTTTCTAAGAAAATTAAAAAAATGTCTCTTAAATAGAAATTTATAATTAAGAACTAACTATTTAAATACAAACTTTCAAAAAAACAAGTTATTTAATAAAATTTAGAAAAATAAAAATGATAAACGGAGAATTATTCCCACGAGCAACACAATCCCAAAAATTTCTCGAAGGGAATCTCTTCCCCACAAAATTAAATAAAAAAATTCGCAGAAAAAGCATTCCTAGGCACCGTCTCTCCCCGTGGACATCTCTACATATACATATGCAGCTATCCCAAATAAGATTTTTTTTTTTTTTTTTTGAGTTCACAAATAAAGAAACATATTACAAAATTAAATTAAGTCGCTCGATTTTTTTTTCTCCAAGCAAATGAAATAAAACTTCGTTAACTTCTAAGCACGTCTAGGCGAATCCATCGTGATCGTACACGTGTACAAAGTTATCGATCGTCACCGTCGAAATGCGAGTGGGTCCGGTCACGGTACAAACTTTTGACATAATAACGCGTGGTACGCGCGTGTCCTTGTGGCAAACGATGCCAGCTTCTGCTGATTCAGACTCCGGCTGGCTGAATCTTATCCAATTTCTTTAATGAATGTGATATTTTAACGTAACAGTGACAGACCTATGATATTATTGGCTGTGAATTTAACATGCTGTAGCCTCTACGAGAGACCTCTTTTACCAACCTTGCACGTGCCAATGCTCGCTCTCATTGGTTAATTCCGTAACTTTTATCACCCAAGGGTAAAGGTATCAAAACTCCTCGTTAATTTCACGCTATATTTTCCTTCTATATCAAAAGTGTTTATTTACGTTTCTCTCTTTTCTTTTTCTTTTCTTTTTTTCTTTTTTTTTTCTTTTTTCTTTTTAAAATTTTGAATTTTACGTTCCGTAGAAAAAGATTTATATTGCGTCGTGAGTCCAACGATCGCCACATTTTGCTCCTGGATCATACATTGAAGACGTTTGAGAAGGTCCGAAGTAATATTTAAGCCGTTTCGCAATCCATTTTCACAAAAAAGGATCGAAATTATCGTTTAGCTTAGAGGGAGGTCAGCTTCAAATCTTGGAATTTAAACCAATTTTTGCCTTCGGAAGTAATACGGAATTTTGCAGCATTTTTGTTTTCAGGATTTGGTTCATTCTTCTTGTTTTTGCCGTTCGGGATCTGGTTGTTGCTCAGATTTATCGGGTACGCGTCGAAATTCATTGGTTTAGATTTGTTTCTTTGTGTGTTTTCGATTGGCATTTGATCTTTCTTTCAATGTTGTACCGTGTCGCTTTCGATTAAAGAATGGATCTAGTTTCGTAATTCTGGAAATGAGGGCATTGGTTGCTGTTGCTTTTTCTTGGAGGTTGGATTCTGCTATGGGTGGAACAGAATGTTTGAGGTTTTGGGCTAGGTAGGATTAGAATAATGGGGAAGATTACATGTATATTGGATTGGAATCCGTTTCTTTTCGTGTTTCTTTTTAATCAGGGTTTTTTTTGTTAAAAATTTTAATTAATTACTTGATTGGGTGATAATCTTCTATTTTATTAACCCTCGCATATTCGTTATGCTTTTATTTTTGGATAACTTTATCGCGTTTCGGAACGTTTAGGGTTTTGATTGTTTTGCTTTGTATTACGGAATTGTTAGGCGCTGCGCTTGTTAGATTGTTCGAATTGCCTCTGTGA

mRNA sequence

ATGACGCAGCTAGCCTGGGTTTGGCCCAGGCCTTTGAGAATTTCTGGAAGGGCTCCCTTCTGGGTAAAGCCCTACAAATTTCAGTCCAAATTTTATAGAGCCATCACTCGGCTCATTGGGCTTGTGGTTATCAACGCGAGGCCCACGGATTTGGTTCATTCTTCTTGTTTTTGCCGTTCGGGATCTGGTTGTTGCTCAGATTTATCGGGCGCTGCGCTTGTTAGATTGTTCGAATTGCCTCTGTGA

Coding sequence (CDS)

ATGACGCAGCTAGCCTGGGTTTGGCCCAGGCCTTTGAGAATTTCTGGAAGGGCTCCCTTCTGGGTAAAGCCCTACAAATTTCAGTCCAAATTTTATAGAGCCATCACTCGGCTCATTGGGCTTGTGGTTATCAACGCGAGGCCCACGGATTTGGTTCATTCTTCTTGTTTTTGCCGTTCGGGATCTGGTTGTTGCTCAGATTTATCGGGCGCTGCGCTTGTTAGATTGTTCGAATTGCCTCTGTGA

Protein sequence

MTQLAWVWPRPLRISGRAPFWVKPYKFQSKFYRAITRLIGLVVINARPTDLVHSSCFCRSGSGCCSDLSGAALVRLFELPL
Homology
[Close]
BLAST of Tan0006570 vs. ExPASy TrEMBL
Match: A0A2C9WNR3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G196600 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 

Query: 4  LAWVWPRPLRISGRAPFWVKPYKF 28
          LAWVWPRPLRISGR PF VKPYKF
Sbjct: 46 LAWVWPRPLRISGRVPFGVKPYKF 69

The following BLAST results are available for this feature:
BLAST of Tan0006570 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0006570 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0006570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2C9WNR36.1e-0491.67Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G196600 PE=4 SV=... [more]
BLAST of Tan0006570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006570.1Tan0006570.1mRNA