Tan0006273 (gene) Snake gourd v1

Overview


Name	Tan0006273
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	lysine-rich arabinogalactan protein 18-like
Location	LG05: 1966557 .. 1967048 (+)
RNA-Seq Expression	Tan0006273
Synteny	Tan0006273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCCGTTGCTTTTTGTTGCCTTCTTCTCTTGATGAATGCCGCTTTCTCTTTGGAACAACCAGCAGAAGTTCCGCCTTCTCCATCCCCTGAATCTGCTGCGGATTCTCCTCCATTTCCCTCTCCTACTCCATTCTCTCACGCTCCTTCCAGTTCTCCGGTGAAATCGCCTTTGAACTCTCCTCCTGCTCCTCCGCCCTCAGATTTCACTCCCACTCCATCTCCAGCGCCTGTTCCATCTCCTTCGCCGACTCCGGCCCATTCACCTACCGCCGACAGCGATTCTAGTAACAGCACTGCCAATGGCGGTGGAGAAGAGTCAGTAGCCTCCAAAGGCGGGATGAATGGAGGCAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCTGCAGCGTGTTTCGTCGGTATTGGAGGAATCGTGTACAAGAAGCGTCAAGACAACATTCGCCGATCTCAGTACGGGAACGCTGCTAGGTCGTCGTTCCTATGA

mRNA sequence

ATGGCGAAATCCGTTGCTTTTTGTTGCCTTCTTCTCTTGATGAATGCCGCTTTCTCTTTGGAACAACCAGCAGAAGTTCCGCCTTCTCCATCCCCTGAATCTGCTGCGGATTCTCCTCCATTTCCCTCTCCTACTCCATTCTCTCACGCTCCTTCCAGTTCTCCGGTGAAATCGCCTTTGAACTCTCCTCCTGCTCCTCCGCCCTCAGATTTCACTCCCACTCCATCTCCAGCGCCTGTTCCATCTCCTTCGCCGACTCCGGCCCATTCACCTACCGCCGACAGCGATTCTAGTAACAGCACTGCCAATGGCGGTGGAGAAGAGTCAGTAGCCTCCAAAGGCGGGATGAATGGAGGCAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCTGCAGCGTGTTTCGTCGGTATTGGAGGAATCGTGTACAAGAAGCGTCAAGACAACATTCGCCGATCTCAGTACGGGAACGCTGCTAGGTCGTCGTTCCTATGA

Coding sequence (CDS)

ATGGCGAAATCCGTTGCTTTTTGTTGCCTTCTTCTCTTGATGAATGCCGCTTTCTCTTTGGAACAACCAGCAGAAGTTCCGCCTTCTCCATCCCCTGAATCTGCTGCGGATTCTCCTCCATTTCCCTCTCCTACTCCATTCTCTCACGCTCCTTCCAGTTCTCCGGTGAAATCGCCTTTGAACTCTCCTCCTGCTCCTCCGCCCTCAGATTTCACTCCCACTCCATCTCCAGCGCCTGTTCCATCTCCTTCGCCGACTCCGGCCCATTCACCTACCGCCGACAGCGATTCTAGTAACAGCACTGCCAATGGCGGTGGAGAAGAGTCAGTAGCCTCCAAAGGCGGGATGAATGGAGGCAAGAAGGCTGGAATTGCAGTTGGAGTGATTGCTGCAGCGTGTTTCGTCGGTATTGGAGGAATCGTGTACAAGAAGCGTCAAGACAACATTCGCCGATCTCAGTACGGGAACGCTGCTAGGTCGTCGTTCCTATGA

Protein sequence

MAKSVAFCCLLLLMNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSPVKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL

Homology

[Close]

BLAST of Tan0006273 vs. ExPASy Swiss-Prot
Match: Q9FPQ6 (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.3e-05
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 23  PAEVPPSPSPESAADSPPFPSPTPFSHAPSSSPVKSPLNSPPAPPPSDFTPTPSPAPVPS 82
           PA VPPSP+P S A SPP PSP P + +PS SP  SP  S P+P PS   P+PSP+P+PS
Sbjct: 318 PAPVPPSPAPPSPAPSPP-PSPAPPTPSPSPSPSPSPSPS-PSPSPS---PSPSPSPIPS 377

Query: 83  PSPTPAHSPTA 94
           PSP P+ SP A
Sbjct: 378 PSPKPSPSPVA 383

[Close]

BLAST of Tan0006273 vs. NCBI nr
Match: XP_022995398.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-59
Identity = 141/168 (83.93%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MAKSVAFCCLLLL-----MNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSP 60
           MAKSVAFCCLLL+     M+AAFSLEQP EVPPSPSPESAADSPP PSPTPF HAP+SSP
Sbjct: 1   MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60

Query: 61  VKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGG 120
            +SPL SPPAPPPSD TP+PSPA VPSPSP PA S TADSD  NS ANGGG E+ ASKGG
Sbjct: 61  AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETEASKGG 120

Query: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of Tan0006273 vs. NCBI nr
Match: KAG6605547.1 (hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013894.1 hypothetical protein SDJN02_24063, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237.3 bits (604), Expect = 9.5e-59
Identity = 139/168 (82.74%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 1   MAKSVAFCCLLLL-----MNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSP 60
           MAKSVAFCCLLL+     M+AAFSLEQP EVPPSPSPESAADSPP PSPTPF HAP+SSP
Sbjct: 1   MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60

Query: 61  VKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGG 120
            +SPL SPPAPPPSD TP+PSPA VPSPSP PA S TADSD  NS ANGGG E+  SKGG
Sbjct: 61  AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120

Query: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           MNGGKKAGIAVGVIAAACFVG+GGIVYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of Tan0006273 vs. NCBI nr
Match: XP_022958106.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 138/168 (82.14%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MAKSVAFCCLLLL-----MNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSP 60
           MAKSVAFCCLLL+     M+AAFSLEQP EVPPSPSPESAADSPP PSPTPF HAP+SSP
Sbjct: 1   MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60

Query: 61  VKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGG 120
            +SPL SPPAPP SD TP PSPA VPSPSP PA S TADSD  NS ANGGG E+  SKGG
Sbjct: 61  AESPLKSPPAPPRSDLTPCPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120

Query: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           MNGGKKAGIAVGVIAAACFVG+GGIVYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of Tan0006273 vs. NCBI nr
Match: XP_023534499.1 (alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.8e-57
Identity = 138/168 (82.14%), Postives = 146/168 (86.90%), Query Frame = 0


Query: 1   MAKSVAFCCLLLL-----MNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSP 60
           MAKSVAF CLLL+     M+AAFSLEQP EVPPSPSPESAADSPP PSPTPF HAP+SSP
Sbjct: 1   MAKSVAFYCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60

Query: 61  VKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGG 120
            +SPL SPPAPPPSD TP+PSPA VPSPSP PA S TADSD  NS ANGGG E+  SKGG
Sbjct: 61  AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120

Query: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           MNGGKKAGIAVGVIAAACFVG+GGIVYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of Tan0006273 vs. NCBI nr
Match: XP_023513399.1 (classical arabinogalactan protein 2-like [Cucurbita pepo subsp. pepo] >XP_023513400.1 classical arabinogalactan protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 131/163 (80.37%), Postives = 140/163 (85.89%), Query Frame = 0


Query: 1   MAKSVAFCCLLLLMNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSPVKSPL 60
           MAK +A+CC LLLMN AFSLEQ  +VPPSPSPESAA+ PP  SPTPF HAP SSPV+SPL
Sbjct: 1   MAKFIAYCCCLLLMNVAFSLEQTEKVPPSPSPESAANFPPLSSPTPFPHAPVSSPVESPL 60

Query: 61  NSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGGMNGGK 120
           +SPPAPPPSD  P+PSPA  PSPS  PA SP ADSD  NS +N GGEES +SKGGMNGGK
Sbjct: 61  HSPPAPPPSDLVPSPSPARGPSPSLNPAPSPAADSDFRNSISNNGGEESESSKGGMNGGK 120

Query: 121 KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 163

[Close]

BLAST of Tan0006273 vs. ExPASy TrEMBL
Match: A0A6J1K7T9 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111490958 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.2e-59
Identity = 141/168 (83.93%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MAKSVAFCCLLLL-----MNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSP 60
           MAKSVAFCCLLL+     M+AAFSLEQP EVPPSPSPESAADSPP PSPTPF HAP+SSP
Sbjct: 1   MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60

Query: 61  VKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGG 120
            +SPL SPPAPPPSD TP+PSPA VPSPSP PA S TADSD  NS ANGGG E+ ASKGG
Sbjct: 61  AESPLKSPPAPPPSDLTPSPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETEASKGG 120

Query: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of Tan0006273 vs. ExPASy TrEMBL
Match: A0A6J1H149 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111459430 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58
Identity = 138/168 (82.14%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MAKSVAFCCLLLL-----MNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSP 60
           MAKSVAFCCLLL+     M+AAFSLEQP EVPPSPSPESAADSPP PSPTPF HAP+SSP
Sbjct: 1   MAKSVAFCCLLLMFVAVFMDAAFSLEQPVEVPPSPSPESAADSPPVPSPTPFPHAPASSP 60

Query: 61  VKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGG 120
            +SPL SPPAPP SD TP PSPA VPSPSP PA S TADSD  NS ANGGG E+  SKGG
Sbjct: 61  AESPLKSPPAPPRSDLTPCPSPARVPSPSPAPAPSLTADSDFRNSIANGGGGETETSKGG 120

Query: 121 MNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           MNGGKKAGIAVGVIAAACFVG+GGIVYKKRQDNIRRSQ+GNAARSSFL
Sbjct: 121 MNGGKKAGIAVGVIAAACFVGVGGIVYKKRQDNIRRSQFGNAARSSFL 168

[Close]

BLAST of Tan0006273 vs. ExPASy TrEMBL
Match: A0A6J1FYT3 (alpha carbonic anhydrase 8-like OS=Cucurbita moschata OX=3662 GN=LOC111449065 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 9.0e-55
Identity = 131/163 (80.37%), Postives = 138/163 (84.66%), Query Frame = 0


Query: 1   MAKSVAFCCLLLLMNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSPVKSPL 60
           MAK +AFCC LLLMN AFSLEQ  EVPPSP PESAA  PP  SPTPF HAP+SSPV+SPL
Sbjct: 1   MAKFIAFCCCLLLMNVAFSLEQTEEVPPSPPPESAASFPPLLSPTPFPHAPASSPVESPL 60

Query: 61  NSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGGMNGGK 120
           +SPPAPPPSD  P+PSPA  PSPS  PA SP AD D  NS +N GGEES +SKGGMNGGK
Sbjct: 61  HSPPAPPPSDLVPSPSPARGPSPSLNPAPSPAADGDFRNSISNNGGEESESSKGGMNGGK 120

Query: 121 KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 163

[Close]

BLAST of Tan0006273 vs. ExPASy TrEMBL
Match: A0A6J1JA87 (proline-rich receptor-like protein kinase PERK12 OS=Cucurbita maxima OX=3661 GN=LOC111483972 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 127/163 (77.91%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 1   MAKSVAFCCLLLLMNAAFSLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSPVKSPL 60
           MAK +AFCC LLLMN AFSLEQ  EVPPS  PESA   PP  SP PF H P+SSPV+SPL
Sbjct: 1   MAKFIAFCCCLLLMNVAFSLEQTEEVPPSSPPESAVSFPPLSSPIPFPHVPASSPVESPL 60

Query: 61  NSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGEESVASKGGMNGGK 120
           +SPPAPPPSD  P+PSPA VPSPSP  A +P ADSD  NS +N GG ES +SKGGMNGGK
Sbjct: 61  HSPPAPPPSDLVPSPSPARVPSPSPNLAPTPAADSDFRNSISNNGGVESESSKGGMNGGK 120

Query: 121 KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL
Sbjct: 121 KAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 163

[Close]

BLAST of Tan0006273 vs. ExPASy TrEMBL
Match: A0A6J1CIM1 (classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC111011307 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.8e-48
Identity = 130/177 (73.45%), Postives = 138/177 (77.97%), Query Frame = 0


Query: 1   MAKSVAFCCLL----LLMNAAFSLE-----QPAEVPPSPSPESAADSPPFPSPTPFSHAP 60
           MAKSVAFCCLL    LL+N   SLE      PA   PSPSP+SAADSPP PSP PF HAP
Sbjct: 1   MAKSVAFCCLLLFVSLLINVTVSLEPLDVTAPAGGSPSPSPQSAADSPPLPSPAPFPHAP 60

Query: 61  SSSPVKSPLNSPPAPPPSDF----TPTPSPAPVPSPSPTPAHSPTADSDSSNSTANGGGE 120
           S+SP +SPLNSPPAPPPSD      PTPSP+P PSPSPTPA SP  DSD S S A+GG  
Sbjct: 61  SASPPESPLNSPPAPPPSDLPPRPAPTPSPSPSPSPSPTPAPSPNRDSDVSKSVASGGEV 120

Query: 121 ES-VASKGGMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           ES  ASKGGMNGGKKAGIA GVIAA CFVGIGGIVYKKRQ+NIRRSQYG+AARSSFL
Sbjct: 121 ESGAASKGGMNGGKKAGIAFGVIAAVCFVGIGGIVYKKRQNNIRRSQYGDAARSSFL 177

[Close]

BLAST of Tan0006273 vs. TAIR 10
Match: AT3G45230.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13
Identity = 67/147 (45.58%), Postives = 87/147 (59.18%), Query Frame = 0


Query: 28  PSPSPESAADSPPFPSPTPFSHAPSSSPVKSPLN-SPPAPPPSDFTPTPSPAPVPSPSP- 87
           P+PSP+  ADSP   +  P      +SP +SP+  S P  P ++ +P+PSPA  PS SP 
Sbjct: 27  PAPSPD-LADSPLIHASPPSKLGSHNSPAESPIEYSSPPEPETEHSPSPSPANSPSVSPP 86

Query: 88  ------------TPAHSPTA-DSDSSNSTANGGGEESVASKGGMNGGKKAGIAVGVIAAA 147
                       +P+ SP A D + S+ T   G +    S GGM+GGKK G+A G IAA 
Sbjct: 87  LPNDSQSPSSSASPSPSPEASDVNHSDITGIEGEKLPSGSGGGMSGGKKVGVAFGAIAAV 146

Query: 148 CFVGIGGIVYKKRQDNIRRSQYGNAAR 160
           C VG+ G VYKKRQ+NIRRS+YG AAR
Sbjct: 147 CVVGVAGFVYKKRQENIRRSRYGYAAR 172

[Close]

BLAST of Tan0006273 vs. TAIR 10
Match: AT2G28440.1 (proline-rich family protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08
Identity = 67/174 (38.51%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 19  SLEQPAEVPPSPSPESAADSPPFPSPTPFSHAPSSSPVKSP-------LNSPPAPPPSDF 78
           S E  +  PPS SPE  ADSP  PS +P +++P  SP  SP         SPP PPP   
Sbjct: 98  SPEVDSPQPPSSSPE--ADSPLPPSSSPEANSP-QSPASSPKPESLADSPSPPPPPPQPE 157

Query: 79  TPT----PSPAPVPSPS---------------PTPAHSPTADSDSSNSTANGGGEESVAS 138
           +P+    P PAPVP+PS               P+PA SP          ++  GEE    
Sbjct: 158 SPSSPSYPEPAPVPAPSDDDSDDDPEPETEYFPSPAPSPELGMAQDIKASDAAGEELNDE 217

Query: 139 KG---GMNGGKKAGIAVGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSFL 164
           +G   GM+G +KAGIA+G I     + IG +VYKKR+DN+ R++Y       FL
Sbjct: 218 RGEDYGMSGLEKAGIAIGTILGVGAIVIGALVYKKRRDNMTRARYTYFTEGEFL 268

[Close]

BLAST of Tan0006273 vs. TAIR 10
Match: AT5G60630.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G45230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-05
Identity = 48/115 (41.74%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 52  SSSPVKSPLNSPPAPPPSDFTPTPSPAPVPSPSPTPAHSPTADSDSSN---STANGGGEE 111
           S+  +   +    + P S+   +PSP  + +    P+ S   +S+  N   ST  GG E 
Sbjct: 26  STEEISPAIEHSSSLPQSETEMSPSPT-MSNDYDYPSSSQLTESNDLNYTDSTRPGGEEA 85

Query: 112 SVASKGGMNGGKKAGIA-VGVIAAACFVGIGGIVYKKRQDNIRRSQYGNAARSSF 163
           SV  + G  GGKK GIA VG IAAA  VG GG V KKR++NIRRS+YG A+   F
Sbjct: 86  SVGGENGGGGGKKTGIAVVGSIAAASMVGFGGYVLKKRRENIRRSRYGYASTEFF 139

The following BLAST results are available for this feature:

BLAST of Tan0006273 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPQ6	6.3e-05	59.15	Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii OX=3055 GN=GP1 PE=...	[more]

BLAST of Tan0006273 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995398.1	2.5e-59	83.93	lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]	[more]
KAG6605547.1	9.5e-59	82.74	hypothetical protein SDJN03_02864, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958106.1	1.8e-57	82.14	lysine-rich arabinogalactan protein 18-like [Cucurbita moschata]	[more]
XP_023534499.1	1.8e-57	82.14	alpha carbonic anhydrase 8-like [Cucurbita pepo subsp. pepo]	[more]
XP_023513399.1	1.1e-54	80.37	classical arabinogalactan protein 2-like [Cucurbita pepo subsp. pepo] >XP_023513...	[more]

BLAST of Tan0006273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7T9	1.2e-59	83.93	lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H149	8.7e-58	82.14	lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1FYT3	9.0e-55	80.37	alpha carbonic anhydrase 8-like OS=Cucurbita moschata OX=3662 GN=LOC111449065 PE...	[more]
A0A6J1JA87	1.4e-52	77.91	proline-rich receptor-like protein kinase PERK12 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CIM1	4.8e-48	73.45	classical arabinogalactan protein 1-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Tan0006273 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45230.1	2.2e-13	45.58	hydroxyproline-rich glycoprotein family protein	[more]
AT2G28440.1	2.1e-08	38.51	proline-rich family protein	[more]
AT5G60630.1	3.8e-05	41.74	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 79..96 score: 25.56 coord: 21..33 score: 38.46 coord: 62..78 score: 40.0 coord: 35..56 score: 41.82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..107
None	No IPR available	PANTHER	PTHR36721:SF5	PROTEIN, PUTATIVE-RELATED	coord: 5..163
None	No IPR available	PANTHER	PTHR36721	PROLINE-RICH FAMILY PROTEIN	coord: 5..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006273.1	Tan0006273.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016301	kinase activity