Tan0006268 (gene) Snake gourd v1

Overview
NameTan0006268
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionsperm mitochondrial-associated cysteine-rich protein-like
LocationLG01: 85797307 .. 85797714 (-)
RNA-Seq ExpressionTan0006268
SyntenyTan0006268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCGGTTAGATTTCCGGCCAAAATCCTGGCTCTGGTCGTCGTTTTCCACCTCAAGTCCGCCATCTCTGCCGCCGACGACGCCACCATGCCCACACCCATCTCCTGCGCCAACTGCACCATTTGTCAATCCGCCTGCCGCCCTCCGCCGGCCTCAACTTCTCCGACGTATGAGGCACTGCCACCACCGCCGCCGATTGCAGAGCCAGAGCCATTGCCAGTGCCGGTTGCTCCGGCGAACTGCCCTCCCACTATTGTCCAGTGCTGCCAGTTTCTGCCGCCACCACCGCCGCGGCCGAATGGTAATATATACACGCCGTTTTATAATGAGTCGTCGTCTTCATTTTTGAAAGGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGA

mRNA sequence

ATGTCTCCGGTTAGATTTCCGGCCAAAATCCTGGCTCTGGTCGTCGTTTTCCACCTCAAGTCCGCCATCTCTGCCGCCGACGACGCCACCATGCCCACACCCATCTCCTGCGCCAACTGCACCATTTGTCAATCCGCCTGCCGCCCTCCGCCGGCCTCAACTTCTCCGACGTATGAGGCACTGCCACCACCGCCGCCGATTGCAGAGCCAGAGCCATTGCCAGTGCCGGTTGCTCCGGCGAACTGCCCTCCCACTATTGTCCAGTGCTGCCAGTTTCTGCCGCCACCACCGCCGCGGCCGAATGGTAATATATACACGCCGTTTTATAATGAGTCGTCGTCTTCATTTTTGAAAGGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGA

Coding sequence (CDS)

ATGTCTCCGGTTAGATTTCCGGCCAAAATCCTGGCTCTGGTCGTCGTTTTCCACCTCAAGTCCGCCATCTCTGCCGCCGACGACGCCACCATGCCCACACCCATCTCCTGCGCCAACTGCACCATTTGTCAATCCGCCTGCCGCCCTCCGCCGGCCTCAACTTCTCCGACGTATGAGGCACTGCCACCACCGCCGCCGATTGCAGAGCCAGAGCCATTGCCAGTGCCGGTTGCTCCGGCGAACTGCCCTCCCACTATTGTCCAGTGCTGCCAGTTTCTGCCGCCACCACCGCCGCGGCCGAATGGTAATATATACACGCCGTTTTATAATGAGTCGTCGTCTTCATTTTTGAAAGGTGGGTTGGTCTCTGTTTTGGCCCCTGTTTTTGGGTTGGCCGCCATTTTCTGA

Protein sequence

MSPVRFPAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPPPIAEPEPLPVPVAPANCPPTIVQCCQFLPPPPPRPNGNIYTPFYNESSSSFLKGGLVSVLAPVFGLAAIF
Homology
BLAST of Tan0006268 vs. NCBI nr
Match: KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 2.2e-45
Identity = 106/132 (80.30%), Postives = 112/132 (84.85%), Query Frame = 0

Query: 7   PAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPPP 66
           PAK LALV+VFHLKSAI+AADDA+MPTP SC NC +CQSACRPPP    P     PPPPP
Sbjct: 3   PAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPP-DAQPLLPP-PPPPP 62

Query: 67  IAEPEPLPVPVAPANCPPTIVQCCQFLPP--PPPRPNG-NIYTPFYNESSSSFLKGGLVS 126
           IAEPEPLPVPV PANCPPTIVQCCQF+PP  PPP PNG NIYTPFYNES SSFLK GLVS
Sbjct: 63  IAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 122

Query: 127 VLAPVFGLAAIF 136
           VLAPVFG+AAIF
Sbjct: 123 VLAPVFGVAAIF 132

BLAST of Tan0006268 vs. NCBI nr
Match: KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.0 bits (484), Expect = 6.5e-45
Identity = 105/132 (79.55%), Postives = 111/132 (84.09%), Query Frame = 0

Query: 7   PAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPPP 66
           PAK LALV+VFHLKSAI+AADDA+MPTP SC NC +CQSACRPPP    P     PPPPP
Sbjct: 3   PAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPP-DAQPLLPP-PPPPP 62

Query: 67  IAEPEPLPVPVAPANCPPTIVQCCQFLPP--PPPRPNG-NIYTPFYNESSSSFLKGGLVS 126
           IAEPEPLPVPV P NCPPTIVQCCQF+PP  PPP PNG NIYTPFYNES SSFLK GLVS
Sbjct: 63  IAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPNGNNIYTPFYNESCSSFLKRGLVS 122

Query: 127 VLAPVFGLAAIF 136
           VLAPVFG+AAIF
Sbjct: 123 VLAPVFGVAAIF 132

BLAST of Tan0006268 vs. NCBI nr
Match: XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 102/136 (75.00%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 6   FPAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPP 65
           FPAK+LALVVVF+L SA+SA DDA M TPISC NCTICQS CRPP +   P     PPPP
Sbjct: 2   FPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPPP 61

Query: 66  -PIAEPEPLPVPVAPANCPPTIVQCCQFLPPPPPRP-----NGNIYTPFYNESSSSFLKG 125
            P AEPEPLP+PVAPANCPPTIVQCCQFLPPPPP P     NGNIYTP YNESSSSFL+ 
Sbjct: 62  APYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLRV 121

Query: 126 GLVSVLAPVFGLAAIF 136
           GL S LAPVFGL AIF
Sbjct: 122 GLGSALAPVFGLVAIF 137

BLAST of Tan0006268 vs. NCBI nr
Match: KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 6.7e-42
Identity = 99/135 (73.33%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 6   FPAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPP 65
           FPAK+LALVVVF+L +A+SA DDA MPTPISC NCTICQS C PPP+   P   + PPP 
Sbjct: 45  FPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPS 104

Query: 66  PIAEPEPLPVPVAPANCPPTIVQCCQFLPPPPPRP-----NGNIYTPFYNESSSSFLKGG 125
           P AEPEPLP PVAPANCPPTIVQCCQFLPPPPP P     NGN+YTP YN SSSSFL+ G
Sbjct: 105 PYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLRVG 164

Query: 126 LVSVLAPVFGLAAIF 136
           L S LAPVFGL AIF
Sbjct: 165 LGSALAPVFGLLAIF 178

BLAST of Tan0006268 vs. NCBI nr
Match: XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 6.7e-42
Identity = 99/135 (73.33%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 6   FPAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPP 65
           FPAK+LALVVVF+L +A+SA DDA MPTPISC NCTICQS C PPP+   P   + PPP 
Sbjct: 2   FPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPS 61

Query: 66  PIAEPEPLPVPVAPANCPPTIVQCCQFLPPPPPRP-----NGNIYTPFYNESSSSFLKGG 125
           P AEPEPLP PVAPANCPPTIVQCCQFLPPPPP P     NGN+YTP YN SSSSFL+ G
Sbjct: 62  PYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLRVG 121

Query: 126 LVSVLAPVFGLAAIF 136
           L S LAPVFGL AIF
Sbjct: 122 LGSALAPVFGLLAIF 135

BLAST of Tan0006268 vs. ExPASy TrEMBL
Match: A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.9e-44
Identity = 102/136 (75.00%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 6   FPAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPP 65
           FPAK+LALVVVF+L SA+SA DDA M TPISC NCTICQS CRPP +   P     PPPP
Sbjct: 2   FPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPPP 61

Query: 66  -PIAEPEPLPVPVAPANCPPTIVQCCQFLPPPPPRP-----NGNIYTPFYNESSSSFLKG 125
            P AEPEPLP+PVAPANCPPTIVQCCQFLPPPPP P     NGNIYTP YNESSSSFL+ 
Sbjct: 62  APYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLRV 121

Query: 126 GLVSVLAPVFGLAAIF 136
           GL S LAPVFGL AIF
Sbjct: 122 GLGSALAPVFGLVAIF 137

BLAST of Tan0006268 vs. ExPASy TrEMBL
Match: A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 99/135 (73.33%), Postives = 107/135 (79.26%), Query Frame = 0

Query: 6   FPAKILALVVVFHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPPPP 65
           FPAK+LALVVVF+L +A+SA DDA MPTPISC NCTICQS C PPP+   P   + PPP 
Sbjct: 45  FPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPS 104

Query: 66  PIAEPEPLPVPVAPANCPPTIVQCCQFLPPPPPRP-----NGNIYTPFYNESSSSFLKGG 125
           P AEPEPLP PVAPANCPPTIVQCCQFLPPPPP P     NGN+YTP YN SSSSFL+ G
Sbjct: 105 PYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLRVG 164

Query: 126 LVSVLAPVFGLAAIF 136
           L S LAPVFGL AIF
Sbjct: 165 LGSALAPVFGLLAIF 178

BLAST of Tan0006268 vs. ExPASy TrEMBL
Match: W9QFT0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 55/138 (39.86%), Postives = 73/138 (52.90%), Query Frame = 0

Query: 8   AKILALVVV----FHLKSAISAADDATMPTPISCANCTICQSACRPPPASTSPTYEALPP 67
           AK++ ++ V    F L  A   + DA +P+P  C NCT+CQ  C  PPAS +P+Y A PP
Sbjct: 4   AKLVFIIAVCLSAFSLCCAWENSGDA-LPSPTPCFNCTMCQYPCLSPPASGNPSYGAPPP 63

Query: 68  PPP----IAEPEPLPVPVAP--ANCPPTIVQCCQFLPPPPPRPNGNIYTPFYNESSSSFL 127
           PPP    +    PLP P  P    CPPT +QCCQ+ PPPP      +Y P YN +    L
Sbjct: 64  PPPELPGLPADIPLPPPQQPWQGKCPPTPIQCCQYTPPPP----YGVYVP-YNHALPCSL 123

Query: 128 KGGLVSVLAPVFGLAAIF 136
              L  ++  +F  A  F
Sbjct: 124 PIFLYVIMMLLFSSAVTF 135

BLAST of Tan0006268 vs. ExPASy TrEMBL
Match: A0A443NET1 (Nitrile-specifier protein 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00547500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-07
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 28  DATMPTPISCANCTICQSACRPPPASTSPTYEALPPPPPIAEPEPLPVPVAPANCPPT-I 87
           D  +P+P++C NC++CQ  C P P +T P Y+   PPP    P P P    P+NCPP+  
Sbjct: 34  DDNIPSPVACFNCSLCQYPCNPSPPAT-PAYQPFAPPPS-PPPPPSPSMPVPSNCPPSPP 93

Query: 88  VQCCQFLPPPPPRPNGNIYTPFYNESSSSFLK 119
            QCCQ  PP PP P  NI  P+YN  +S  L+
Sbjct: 94  SQCCQVPPPGPPHPPPNI--PYYNYGTSPPLR 121

BLAST of Tan0006268 vs. ExPASy TrEMBL
Match: A0A6A1VX00 (4Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR4G016275 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 51/137 (37.23%), Postives = 64/137 (46.72%), Query Frame = 0

Query: 21  SAISAADDATMPTPISCANCTICQSACR-------------------PPPASTS--PTYE 80
           SA   A    +P+P +C NCT+CQ  C                    PPP S +  P YE
Sbjct: 22  SATGEASGDVLPSPSACTNCTLCQYPCHTPAPPLPDYPLYGTPPLPPPPPPSLAEYPPYE 81

Query: 81  -ALPPPPPIAEPEPLPVPVAPANCPP-TIVQCCQFLPPPPPRPNGNIYTPFYNESSSSFL 135
            + PPPPP   P  LP   A  NCPP T+VQCCQ+   PPP   G  Y P+ N S+S   
Sbjct: 82  TSSPPPPPPPPPSQLP---AQGNCPPTTVVQCCQY---PPPIAYG--YVPYNNYSASCPS 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7037325.12.2e-4580.30hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607747.16.5e-4579.55hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008463043.11.2e-4375.00PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me... [more]
KGN44024.16.7e-4273.33hypothetical protein Csa_011878 [Cucumis sativus][more]
XP_011659730.16.7e-4273.33leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A1S3CI955.9e-4475.00sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365... [more]
A0A0A0K5363.2e-4273.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1[more]
W9QFT01.1e-0839.86Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1[more]
A0A443NET12.6e-0744.57Nitrile-specifier protein 5 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=C... [more]
A0A6A1VX001.1e-0537.234Fe-4S ferredoxin-type domain-containing protein OS=Morella rubra OX=262757 GN=C... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006268.1Tan0006268.1mRNA