Tan0006218 (gene) Snake gourd v1

Overview


Name	Tan0006218
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG07: 13598832 .. 13599533 (+)
RNA-Seq Expression	Tan0006218
Synteny	Tan0006218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACACTAGTTTTAAATTTATTTACCCATATATATATCCCTATCTTGAATCCCACCCTCTCTCAATTATTAGAAAAACACGAAGAGAGAGAGAGAGAAAAGGAAGGATGAGTGAAAGAGGGGAGGGGCAAAGCAGTTGGCCGGAAGAGAAAGAAGGGGAAACAAACTCCGGCGACCGGCGGACAGTGTATCCAAAGCCATTTTTTTCACCTCAAAATCCACAATCGAGGAGCAAAATCAAAAATAACTTCCTTATGACTGGTACCATCGGCGGCAGCGCCTCCTCCAACAAGAAGAAGTGACGAACTGATCTATCTCTGTTTCTTCATTTTTCTTCTCTGTCCTTAATTTCAAGTTTAATTTCAACTGCTGTTGTAAATTATCTATATATCTTGATTTCGCTCTTTAACCCTTTCAAATCTCTCTCTAATTTCTTCCCATCTCTTCTTCTCTCTATCTCTCCAGATCGATCTATTCATTTGTCGGCTTTTACTTTTGATCTGGTTTGCCGATCTTTACCCCCATTTGAGTCTGTCGTTTTTGGTATAAGATTAAATTTTCTAAGCTTAAACGTTTGAGTTGATGGGATGGATAATTTTAGGAGATCTTGTAATGTAAATTTCACTTCCTAATTAATATTAATTTCTATTTGTAAAGTTGAGAAAGAGTTTAAAGTTAAATATTGATACGACGTTAAATTTA

mRNA sequence

TAAACACTAGTTTTAAATTTATTTACCCATATATATATCCCTATCTTGAATCCCACCCTCTCTCAATTATTAGAAAAACACGAAGAGAGAGAGAGAGAAAAGGAAGGATGAGTGAAAGAGGGGAGGGGCAAAGCAGTTGGCCGGAAGAGAAAGAAGGGGAAACAAACTCCGGCGACCGGCGGACAGTGTATCCAAAGCCATTTTTTTCACCTCAAAATCCACAATCGAGGAGCAAAATCAAAAATAACTTCCTTATGACTGGTACCATCGGCGGCAGCGCCTCCTCCAACAAGAAGAAGTGACGAACTGATCTATCTCTGTTTCTTCATTTTTCTTCTCTGTCCTTAATTTCAAGTTTAATTTCAACTGCTGTTGTAAATTATCTATATATCTTGATTTCGCTCTTTAACCCTTTCAAATCTCTCTCTAATTTCTTCCCATCTCTTCTTCTCTCTATCTCTCCAGATCGATCTATTCATTTGTCGGCTTTTACTTTTGATCTGGTTTGCCGATCTTTACCCCCATTTGAGTCTGTCGTTTTTGGTATAAGATTAAATTTTCTAAGCTTAAACGTTTGAGTTGATGGGATGGATAATTTTAGGAGATCTTGTAATGTAAATTTCACTTCCTAATTAATATTAATTTCTATTTGTAAAGTTGAGAAAGAGTTTAAAGTTAAATATTGATACGACGTTAAATTTA

Coding sequence (CDS)

ATGAGTGAAAGAGGGGAGGGGCAAAGCAGTTGGCCGGAAGAGAAAGAAGGGGAAACAAACTCCGGCGACCGGCGGACAGTGTATCCAAAGCCATTTTTTTCACCTCAAAATCCACAATCGAGGAGCAAAATCAAAAATAACTTCCTTATGACTGGTACCATCGGCGGCAGCGCCTCCTCCAACAAGAAGAAGTGA

Protein sequence

MSERGEGQSSWPEEKEGETNSGDRRTVYPKPFFSPQNPQSRSKIKNNFLMTGTIGGSASSNKKK

Homology

The following BLAST results are available for this feature:

BLAST of Tan0006218 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006218 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006218 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006218 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006218.1	Tan0006218.1	mRNA