Tan0006211 (gene) Snake gourd v1

Overview
NameTan0006211
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionEarly nodulin-75-like
LocationLG03: 65512236 .. 65512541 (+)
RNA-Seq ExpressionTan0006211
SyntenyTan0006211
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCCATATTATGGTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATGGATATCCCAAGCACGAAGCTGTTCCTTCCTATGCATACACTTATCATGGATATGTCCATCCTTATCCTTATGATCCTTATTATTATCAAGGATATCCTTATTCTGCAGCAACAACAGTCCCTCCTCCTCCTCCTGTATATTATCAACAAAACTATGGGCCAAACACGGGGGGAATTTTCACGTCCATGCTTTCCTCTGTCACTGGGAGTATTGGTGCTTCTTTCATCTCTTCTTTTCTTTTTACCTAA

mRNA sequence

ATGAATCCATATTATGGTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATGGATATCCCAAGCACGAAGCTGTTCCTTCCTATGCATACACTTATCATGGATATGTCCATCCTTATCCTTATGATCCTTATTATTATCAAGGATATCCTTATTCTGCAGCAACAACAGTCCCTCCTCCTCCTCCTGTATATTATCAACAAAACTATGGGCCAAACACGGGGGGAATTTTCACGTCCATGCTTTCCTCTGTCACTGGGAGTATTGGTGCTTCTTTCATCTCTTCTTTTCTTTTTACCTAA

Coding sequence (CDS)

ATGAATCCATATTATGGTTATTACAGCTATGGATATCCTTATCCTCATCAAGGATATGGATATCCCAAGCACGAAGCTGTTCCTTCCTATGCATACACTTATCATGGATATGTCCATCCTTATCCTTATGATCCTTATTATTATCAAGGATATCCTTATTCTGCAGCAACAACAGTCCCTCCTCCTCCTCCTGTATATTATCAACAAAACTATGGGCCAAACACGGGGGGAATTTTCACGTCCATGCTTTCCTCTGTCACTGGGAGTATTGGTGCTTCTTTCATCTCTTCTTTTCTTTTTACCTAA

Protein sequence

MNPYYGYYSYGYPYPHQGYGYPKHEAVPSYAYTYHGYVHPYPYDPYYYQGYPYSAATTVPPPPPVYYQQNYGPNTGGIFTSMLSSVTGSIGASFISSFLFT
Homology
[Close]
BLAST of Tan0006211 vs. NCBI nr
Match: KAA0045171.1 (early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 6.6e-10
Identity = 60/112 (53.57%), Postives = 68/112 (60.71%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGYPKHE---AVPSYAY-----TY-HGYVHPYPYDPYYYQGY 60
           MN  YG YSYGYPYPHQ  GYPK++     P+Y Y      Y HG+VHPY   P Y   Y
Sbjct: 1   MNNPYGCYSYGYPYPHQ--GYPKYQGQGVPPNYKYGAGYINYGHGHVHPY---PCYDYSY 60

Query: 61  PYSAATTVPPPPPVYYQQNYGPN-TGGIFTSMLSSVTGSIG-ASFISSFLFT 102
           PY   +T   PP   YQQNYG N T GI  SMLSSV+G+   ASFISS  F+
Sbjct: 61  PYPPPSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFFS 107

[Close]
BLAST of Tan0006211 vs. NCBI nr
Match: KAE8649545.1 (hypothetical protein Csa_017919 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 55/106 (51.89%), Postives = 61/106 (57.55%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGY-------PKHEAVPSYAYTYHGYVHPYP-YD-PYYYQGY 60
           MN  YG+YSYGYPYPHQGY         P H     Y    HG+VHPY  YD  Y YQ Y
Sbjct: 1   MNNPYGHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQAY 60

Query: 61  PYSAATTVPPPPPVYYQQNYGPN-TGGIFTSMLSSVTGSIG-ASFI 96
           PY   +T   PP   YQQNY  N  GGI  SMLSSV+G+   ASF+
Sbjct: 61  PYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFV 106

[Close]
BLAST of Tan0006211 vs. NCBI nr
Match: XP_008450016.1 (PREDICTED: early nodulin-75-like [Cucumis melo] >KAA0045161.1 early nodulin-75-like [Cucumis melo var. makuwa] >TYK23577.1 early nodulin-75-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07
Identity = 58/136 (42.65%), Postives = 64/136 (47.06%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGYPKHEAV-----PSYAYTYHGYVHPYPYDPYYYQGYP-YS 60
           MN  YGYYS+GYPYPH+   YPK++A      P+   +YH Y   YPY    YQGYP Y 
Sbjct: 1   MNNPYGYYSHGYPYPHK-RSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 61  AATTVPPPP--------PVYY----------------------QQNYGPNTGGIFTSMLS 101
           A TT  PPP          YY                         Y P   G  TSMLS
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGSLTSMLS 120

[Close]
BLAST of Tan0006211 vs. NCBI nr
Match: KAE8649547.1 (hypothetical protein Csa_018181 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-05
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 4   YYGYYSYGYPYPHQGYGYPKHEAVPSYA------YTYHGYVHPYPYDPYYYQGYP-YSAA 63
           Y  YY +  P  +QG  YPK++A P+ A       +YH Y   YPY    Y+GYP Y A 
Sbjct: 328 YEDYYPHRSPCNYQG-RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAP 387

Query: 64  TTVPPPPPVYYQQNYGPNTGGIFTSMLSSVTGSIGASFISSFLF 101
           TT  PPPP    Q+ G       TSM SSV GSIGASFISS LF
Sbjct: 388 TTKAPPPP----QSKGKKNCRALTSMASSVAGSIGASFISSLLF 426

[Close]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match: A0A0A0KZN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.5e-11
Identity = 58/111 (52.25%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGY-------PKHEAVPSYAYTYHGYVHPYP-YD-PYYYQGY 60
           MN  YG+YSYGYPYPHQGY         P H     Y    HG+VHPY  YD  Y YQ Y
Sbjct: 1   MNNPYGHYSYGYPYPHQGYPKYQGQGVPPNHNYGAGYTNYQHGHVHPYSCYDYSYLYQAY 60

Query: 61  PYSAATTVPPPPPVYYQQNYGPN-TGGIFTSMLSSVTGSIG-ASFISSFLF 101
           PY   +T   PP   YQQNY  N  GGI  SMLSSV+G+   ASF+SS  F
Sbjct: 61  PYPPPSTTLIPPQYNYQQNYDTNIKGGILASMLSSVSGNGSIASFVSSLFF 111

[Close]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match: A0A5A7TUH5 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00750 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.2e-10
Identity = 60/112 (53.57%), Postives = 68/112 (60.71%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGYPKHE---AVPSYAY-----TY-HGYVHPYPYDPYYYQGY 60
           MN  YG YSYGYPYPHQ  GYPK++     P+Y Y      Y HG+VHPY   P Y   Y
Sbjct: 1   MNNPYGCYSYGYPYPHQ--GYPKYQGQGVPPNYKYGAGYINYGHGHVHPY---PCYDYSY 60

Query: 61  PYSAATTVPPPPPVYYQQNYGPN-TGGIFTSMLSSVTGSIG-ASFISSFLFT 102
           PY   +T   PP   YQQNYG N T GI  SMLSSV+G+   ASFISS  F+
Sbjct: 61  PYPPPSTTLIPPQYNYQQNYGTNITEGILPSMLSSVSGNGSIASFISSLFFS 107

[Close]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match: A0A5A7TUG4 (Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00850 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-07
Identity = 58/136 (42.65%), Postives = 64/136 (47.06%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGYPKHEAV-----PSYAYTYHGYVHPYPYDPYYYQGYP-YS 60
           MN  YGYYS+GYPYPH+   YPK++A      P+   +YH Y   YPY    YQGYP Y 
Sbjct: 1   MNNPYGYYSHGYPYPHK-RSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 61  AATTVPPPP--------PVYY----------------------QQNYGPNTGGIFTSMLS 101
           A TT  PPP          YY                         Y P   G  TSMLS
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGSLTSMLS 120

[Close]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match: A0A1S3BP00 (early nodulin-75-like OS=Cucumis melo OX=3656 GN=LOC103491729 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-07
Identity = 58/136 (42.65%), Postives = 64/136 (47.06%), Query Frame = 0 

Query: 1   MNPYYGYYSYGYPYPHQGYGYPKHEAV-----PSYAYTYHGYVHPYPYDPYYYQGYP-YS 60
           MN  YGYYS+GYPYPH+   YPK++A      P+   +YH Y   YPY    YQGYP Y 
Sbjct: 1   MNNPYGYYSHGYPYPHK-RSYPKYKAAVPPRRPAGYTSYHEYEDYYPYPSRNYQGYPKYD 60

Query: 61  AATTVPPPP--------PVYY----------------------QQNYGPNTGGIFTSMLS 101
           A TT  PPP          YY                         Y P   G  TSMLS
Sbjct: 61  APTTKAPPPHQCSYHEYEDYYPYPSRNYQGYPKYDAPTTKAPPSHQYRPKKEGSLTSMLS 120

[Close]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match: A0A0A0KXB0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297410 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 0 

Query: 4   YYGYYSYGYPYPHQGYGYPKHEAVPSYA------YTYHGYVHPYPYDPYYYQGYP-YSAA 63
           Y  YY +  P  +QG  YPK++A P+ A       +YH Y   YPY    Y+GYP Y A 
Sbjct: 46  YEDYYPHRSPCNYQG-RYPKYDAPPTRAPPPDHQCSYHEYEDYYPYQSSLYEGYPMYDAP 105

Query: 64  TTVPPPPPVYYQQNYGPNTGGIFTSMLSSVTGSIGASFISSFLF 101
           TT  PPPP    Q+ G       TSM SSV GSIGASFISS LF
Sbjct: 106 TTKAPPPP----QSKGKKNCRALTSMASSVAGSIGASFISSLLF 144

The following BLAST results are available for this feature:
BLAST of Tan0006211 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0006211 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045171.16.6e-1053.57early nodulin-75-like [Cucumis melo var. makuwa] >TYK23567.1 early nodulin-75-li... [more]
KAE8649545.12.5e-0951.89hypothetical protein Csa_017919 [Cucumis sativus][more]
XP_008450016.18.9e-0742.65PREDICTED: early nodulin-75-like [Cucumis melo] >KAA0045161.1 early nodulin-75-l... [more]
KAE8649547.16.4e-0548.08hypothetical protein Csa_018181 [Cucumis sativus][more]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZN96.5e-1152.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296860 PE=4 SV=1[more]
A0A5A7TUH53.2e-1053.57Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
A0A5A7TUG44.3e-0742.65Early nodulin-75-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
A0A1S3BP004.3e-0742.65early nodulin-75-like OS=Cucumis melo OX=3656 GN=LOC103491729 PE=4 SV=1[more]
A0A0A0KXB03.1e-0548.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297410 PE=4 SV=1[more]
BLAST of Tan0006211 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006211.1Tan0006211.1mRNA