Tan0006182 (gene) Snake gourd v1

Overview
NameTan0006182
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 12305920 .. 12306111 (+)
RNA-Seq ExpressionTan0006182
SyntenyTan0006182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCTGCAAGGAGGAGAAAGAGCTGGAGCGCCGACAGGCCACCGGCACGTGCCCGTCATGTGGCGGCAAAGTACAGGCTGTGGATGTGGAGAGAAAATGGAGGCTCTGTTTGATTCCGCTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTAACGTGTGGTCGTCGTTTGGAGCTGTATCTTTAG

mRNA sequence

ATGTTGTTCTGCAAGGAGGAGAAAGAGCTGGAGCGCCGACAGGCCACCGGCACGTGCCCGTCATGTGGCGGCAAAGTACAGGCTGTGGATGTGGAGAGAAAATGGAGGCTCTGTTTGATTCCGCTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTAACGTGTGGTCGTCGTTTGGAGCTGTATCTTTAG

Coding sequence (CDS)

ATGTTGTTCTGCAAGGAGGAGAAAGAGCTGGAGCGCCGACAGGCCACCGGCACGTGCCCGTCATGTGGCGGCAAAGTACAGGCTGTGGATGTGGAGAGAAAATGGAGGCTCTGTTTGATTCCGCTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTAACGTGTGGTCGTCGTTTGGAGCTGTATCTTTAG

Protein sequence

MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLELYL
Homology
BLAST of Tan0006182 vs. NCBI nr
Match: XP_008451097.1 (PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 6.3e-27
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKEEKEL RRQATGTCPSCGGKVQAVDVERKWRLC +PLCFKIKRKYYC+ CGRRLE
Sbjct: 1  MLFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLICGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. NCBI nr
Match: XP_038891000.1 (uncharacterized protein LOC120080412 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFC EEKEL RRQATGTCPSCGGKVQAVDVERKWRLC +PLCFKIKRKYYCV CGRRLE
Sbjct: 1  MLFCNEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. NCBI nr
Match: XP_011648964.1 (uncharacterized protein LOC105434563 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKEEKEL R+QATGTCPSCGGKVQAVDVER+WR C +PLCFKIKRKYYC+ CGRRLE
Sbjct: 1  MLFCKEEKELGRQQATGTCPSCGGKVQAVDVERRWRFCFVPLCFKIKRKYYCLICGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. NCBI nr
Match: XP_022929732.1 (uncharacterized protein LOC111436231 [Cucurbita moschata] >XP_022996867.1 uncharacterized protein LOC111491984 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKE+KEL RRQA G CP CGGKV+AVDVERKWRLCL PLCFKIKRKYYCV CGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. NCBI nr
Match: XP_023547069.1 (uncharacterized protein LOC111805987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKE+KEL RRQA G CP CGGKV+AVDVERKWRLCL PLCFKIKRKYYC+ CGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCLMCGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. ExPASy TrEMBL
Match: A0A1S3BRU0 (uncharacterized protein LOC103492473 OS=Cucumis melo OX=3656 GN=LOC103492473 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.1e-27
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKEEKEL RRQATGTCPSCGGKVQAVDVERKWRLC +PLCFKIKRKYYC+ CGRRLE
Sbjct: 1  MLFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLICGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. ExPASy TrEMBL
Match: A0A6J1K383 (uncharacterized protein LOC111491984 OS=Cucurbita maxima OX=3661 GN=LOC111491984 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKE+KEL RRQA G CP CGGKV+AVDVERKWRLCL PLCFKIKRKYYCV CGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. ExPASy TrEMBL
Match: A0A6J1ENJ0 (uncharacterized protein LOC111436231 OS=Cucurbita moschata OX=3662 GN=LOC111436231 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.4e-25
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          MLFCKE+KEL RRQA G CP CGGKV+AVDVERKWRLCL PLCFKIKRKYYCV CGRRLE
Sbjct: 1  MLFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLE 60

Query: 61 LY 63
          LY
Sbjct: 61 LY 62

BLAST of Tan0006182 vs. ExPASy TrEMBL
Match: A0A6J1D838 (uncharacterized protein LOC111018230 OS=Momordica charantia OX=3673 GN=LOC111018230 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          M+FCKEE EL RRQA+GTCPSCGGKV+AVDVERKWRL  +PLCFKIKRKY CV CGRRLE
Sbjct: 1  MIFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLE 60

Query: 61 L 62
          L
Sbjct: 61 L 60

BLAST of Tan0006182 vs. ExPASy TrEMBL
Match: A0A067JYB9 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19990 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          +L  +EEKEL+RRQA G+CP CGGKVQA+DVE KW  C +P+C+KIKRKY+C  C RRLE
Sbjct: 5  LLCDEEEKELDRRQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCARRLE 64

Query: 61 LY 63
          LY
Sbjct: 65 LY 66

BLAST of Tan0006182 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-19
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 5  KEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLELY 63
          +EE EL R+QA G+CP CGGKVQ +DVERKW  C +PLCFKIKRKY C +C RRL LY
Sbjct: 9  EEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCDRRLVLY 66

BLAST of Tan0006182 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 7.5e-18
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 0

Query: 1  MLFCKEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRLE 60
          +++ +E+ EL R+QA G CP CGGKV AVD+E KW  C +PLCFK+KRKY C +C R L 
Sbjct: 5  VVYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCERHLV 64

Query: 61 LY 63
          LY
Sbjct: 65 LY 66

BLAST of Tan0006182 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-12
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 5  KEEKELERRQATGTCPSCGGKVQAVDVERKWRLCLIPLCFKIKRKYYCVTCGRRL 60
          ++E+ + R  A G CP CGG VQ VDV  +WR C +PL  K KR++ C TCG+RL
Sbjct: 9  QDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCGKRL 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_008451097.16.3e-2791.94PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo][more]
XP_038891000.11.1e-2691.94uncharacterized protein LOC120080412 [Benincasa hispida][more]
XP_011648964.11.2e-2587.10uncharacterized protein LOC105434563 [Cucumis sativus][more]
XP_022929732.11.7e-2487.10uncharacterized protein LOC111436231 [Cucurbita moschata] >XP_022996867.1 unchar... [more]
XP_023547069.13.8e-2485.48uncharacterized protein LOC111805987 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A1S3BRU03.1e-2791.94uncharacterized protein LOC103492473 OS=Cucumis melo OX=3656 GN=LOC103492473 PE=... [more]
A0A6J1K3838.4e-2587.10uncharacterized protein LOC111491984 OS=Cucurbita maxima OX=3661 GN=LOC111491984... [more]
A0A6J1ENJ08.4e-2587.10uncharacterized protein LOC111436231 OS=Cucurbita moschata OX=3662 GN=LOC1114362... [more]
A0A6J1D8381.9e-2183.61uncharacterized protein LOC111018230 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A067JYB91.5e-1867.74Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_19990 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G57123.11.0e-1968.97unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G29905.17.5e-1858.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G10695.12.1e-1250.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320METHIONYL-TRNA SYNTHETASEcoord: 4..62
NoneNo IPR availablePANTHERPTHR33320:SF13SUBFAMILY NOT NAMEDcoord: 4..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0006182.1Tan0006182.1mRNA