Tan0006114 (gene) Snake gourd v1

Overview


Name	Tan0006114
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 1036958 .. 1037281 (+)
RNA-Seq Expression	Tan0006114
Synteny	Tan0006114

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGGGAGCAGAAACCGAAGATGTGATGAAGGGGGAGAGAGAGCAGAAGAGGCAGAAGAACAGAGAGCTTAAGGCTGTGTGGACATGTCTGGTTTTAGTTTTGGTAAGTGTATCAGGGGGATTTGTGATGGGTTGGTGGGCGGTTCAGTTTCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTTTGATGATTGCTCCCATCTTCATTTTGATCTCTGTTTTCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCATGATCGAACACCTGAAATTAGATGA

mRNA sequence

ATGCAGGTGGGAGCAGAAACCGAAGATGTGATGAAGGGGGAGAGAGAGCAGAAGAGGCAGAAGAACAGAGAGCTTAAGGCTGTGTGGACATGTCTGGTTTTAGTTTTGGTAAGTGTATCAGGGGGATTTGTGATGGGTTGGTGGGCGGTTCAGTTTCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTTTGATGATTGCTCCCATCTTCATTTTGATCTCTGTTTTCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCATGATCGAACACCTGAAATTAGATGA

Coding sequence (CDS)

ATGCAGGTGGGAGCAGAAACCGAAGATGTGATGAAGGGGGAGAGAGAGCAGAAGAGGCAGAAGAACAGAGAGCTTAAGGCTGTGTGGACATGTCTGGTTTTAGTTTTGGTAAGTGTATCAGGGGGATTTGTGATGGGTTGGTGGGCGGTTCAGTTTCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTTTGATGATTGCTCCCATCTTCATTTTGATCTCTGTTTTCATCTCCAGTTTCTGCAATTCCATGGACAGAATTTCTTCTTTAGTTTCATCCTTGGATCATGATCGAACACCTGAAATTAGATGA

Protein sequence

MQVGAETEDVMKGEREQKRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQWMVPFSLVLMIAPIFILISVFISSFCNSMDRISSLVSSLDHDRTPEIR

Homology

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BLAST of Tan0006114 vs. NCBI nr
Match: KAA0048855.1 (putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 putative permease/transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 187.2 bits (474), Expect = 7.4e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MQVGAETEDVMKGEREQKRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQW 60
           MQVG E EDVMKGE EQK+QKNR+LKAVW C+VLVLVSVSG F+MGWWAV+FHRSQKQQW
Sbjct: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFILISVFISSFCNSMDRISSLVSSLDHDRTPEIR 108
           MVPFSLVLMIAPIF+LISV ISSFCNSMDRISSLVSSLDHDR PEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

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BLAST of Tan0006114 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_010779 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 9.7e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MQVGAETEDVMKGEREQKRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQW 60
           MQVG E EDVMKGE EQK+QKNR+LKAVW C+VLVLVSVSG F+MGWWAV+FHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFILISVFISSFCNSMDRISSLVSSLDHDRTPEIR 108
           MVPFSLVLMIAPIF+LISV ISSFCNSMDRISSLVSSLDHDR PEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

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BLAST of Tan0006114 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_011278 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 2   QVGAETEDVMKGE-REQKRQKNRELKAVWTCLV-LVLVSVSGGFVMGWWAVQFHRSQKQQ 61
           + G   E  MK E R++KR  N +   + T ++ +V+  ++GG V GWW  QFH + +Q 
Sbjct: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73

Query: 62  WMVPFSLVLMIAPIFILISVFISSFCNSMDR-ISSLVSSLDH 101
           WMVPFSLVLMIAPIF+++S+ IS+FCNSMD+  +S   S DH
Sbjct: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

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BLAST of Tan0006114 vs. NCBI nr
Match: KAF3973370.1 (hypothetical protein CMV_003195 [Castanea mollissima])

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-09
Identity = 30/76 (39.47%), Postives = 50/76 (65.79%), Query Frame = 0


Query: 12 KGEREQKRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQWMVPFSLVLMIA 71
          +G+ E   ++   +K+       ++VS+ GG +MGWW  ++HR+ +Q WMVPF LVL+I 
Sbjct: 6  EGKEESHGERKERVKSCIVYSWSLMVSMIGGLIMGWWEYEYHRTNRQLWMVPFGLVLLIT 65

Query: 72 PIFILISVFISSFCNS 88
          P F+  S+F+S +C+S
Sbjct: 66 PPFVWFSIFVSDWCSS 81

[Close]

BLAST of Tan0006114 vs. NCBI nr
Match: TYJ26836.1 (hypothetical protein E1A91_A07G148100v1 [Gossypium mustelinum])

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0


Query: 14  EREQKRQKNRELKAV----WTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQWMVPFSLVLM 73
           E E+  +K+ ELK V      CL   LVS+SG  ++GWW  ++H +  Q W+VPF L+L 
Sbjct: 5   EEERLERKSEELKKVVHTCIACLWSFLVSLSGALMLGWWGYEYHPTNSQLWLVPFGLILF 64

Query: 74  IAPIFILISVFISSFCNSMDRISSLVSSLDHD 102
           + P+ I  ++F+S FCN     SS  SSL HD
Sbjct: 65  VTPLIIWFAIFVSYFCNFTGNGSS--SSL-HD 93

[Close]

BLAST of Tan0006114 vs. ExPASy TrEMBL
Match: A0A5D3DB24 (Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00680 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.6e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MQVGAETEDVMKGEREQKRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQW 60
           MQVG E EDVMKGE EQK+QKNR+LKAVW C+VLVLVSVSG F+MGWWAV+FHRSQKQQW
Sbjct: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFILISVFISSFCNSMDRISSLVSSLDHDRTPEIR 108
           MVPFSLVLMIAPIF+LISV ISSFCNSMDRISSLVSSLDHDR PEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of Tan0006114 vs. ExPASy TrEMBL
Match: A0A0A0L8F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.7e-44
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 1   MQVGAETEDVMKGEREQKRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQW 60
           MQVG E EDVMKGE EQK+QKNR+LKAVW C+VLVLVSVSG F+MGWWAV+FHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 61  MVPFSLVLMIAPIFILISVFISSFCNSMDRISSLVSSLDHDRTPEIR 108
           MVPFSLVLMIAPIF+LISV ISSFCNSMDRISSLVSSLDHDR PEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRISSLVSSLDHDRPPEIR 107

[Close]

BLAST of Tan0006114 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.8e-15
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 0


Query: 2   QVGAETEDVMKGE-REQKRQKNRELKAVWTCLV-LVLVSVSGGFVMGWWAVQFHRSQKQQ 61
           + G   E  MK E R++KR  N +   + T ++ +V+  ++GG V GWW  QFH + +Q 
Sbjct: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73

Query: 62  WMVPFSLVLMIAPIFILISVFISSFCNSMDR-ISSLVSSLDH 101
           WMVPFSLVLMIAPIF+++S+ IS+FCNSMD+  +S   S DH
Sbjct: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of Tan0006114 vs. ExPASy TrEMBL
Match: A0A7N2MCB4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.9e-09
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 12 KGEREQKRQKNRELKAVWTCLVL---VLVSVSGGFVMGWWAVQFHRSQKQQWMVPFSLVL 71
          K  RE+   + RE   V TC+V    +LVS+ GG  MGWW  ++H +  Q WMVPF LVL
Sbjct: 5  KEGREESHGERRE--RVKTCIVYSWSLLVSMIGGLTMGWWEYEYHSTNSQLWMVPFGLVL 64

Query: 72 MIAPIFILISVFISSFCNS 88
          +I P+F+  S+F+S  C+S
Sbjct: 65 LITPLFVWFSIFVSDLCSS 81

[Close]

BLAST of Tan0006114 vs. ExPASy TrEMBL
Match: A0A5B7BZC7 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_043245 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.4e-09
Identity = 31/68 (45.59%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 18  KRQKNRELKAVWTCLVLVLVSVSGGFVMGWWAVQFHRSQKQQWMVPFSLVLMIAPIFILI 77
           K +K+   KA   CL   L+SV GG V+GWW  ++H +  Q WMVPF L+L + P+ +  
Sbjct: 51  KLEKSTVKKACIACLASSLISVVGGLVLGWWEFKYHPTNSQLWMVPFGLILFVTPVIVGF 110

Query: 78  SVFISSFC 86
           SVF+S FC
Sbjct: 111 SVFVSHFC 118

The following BLAST results are available for this feature:

BLAST of Tan0006114 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0006114 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048855.1	7.4e-44	87.85	putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 p...	[more]
KGN56386.1	9.7e-44	87.85	hypothetical protein Csa_010779 [Cucumis sativus]	[more]
KGN56384.1	1.6e-14	48.04	hypothetical protein Csa_011278 [Cucumis sativus]	[more]
KAF3973370.1	7.7e-09	39.47	hypothetical protein CMV_003195 [Castanea mollissima]	[more]
TYJ26836.1	2.3e-08	42.39	hypothetical protein E1A91_A07G148100v1 [Gossypium mustelinum]	[more]

BLAST of Tan0006114 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB24	3.6e-44	87.85	Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0L8F5	4.7e-44	87.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
A0A0A0L5S1	7.8e-15	48.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
A0A7N2MCB4	2.9e-09	45.57	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5B7BZC7	6.4e-09	45.59	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_043245...	[more]

BLAST of Tan0006114 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 30..82 e-value: 4.1E-17 score: 61.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR35165	OS08G0113900 PROTEIN	coord: 5..102
None	No IPR available	PANTHER	PTHR35165:SF1	OS08G0113900 PROTEIN	coord: 5..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006114.1	Tan0006114.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane