Tan0006079 (gene) Snake gourd v1

Overview


Name	Tan0006079
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Histone H2A
Location	LG03: 66286169 .. 66289234 (+)
RNA-Seq Expression	Tan0006079
Synteny	Tan0006079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGAATATGGCGTGTGTCGTTCACTTTCCATTTTATTTCTCATTATTTCATTTCAAAATCAAAGTGTCATCTCCGTTGAAAACCCGTCGTTAACCTTCCTCCCATTTTCACCCTTTTTCTGTTTGTTTCTCGAGAAATTTTTTTATCGATGGACTCTGGCGGCAAGGCGAAGAAAGGCGCCGCCGGCAGAAGAGGCGGCGGAGGCCCCAAGAAGAAGCCGGTCTCTCGGTCCGTCAAAGCCGGCCTCCAGTTTCCTGTCGGCAGAATCGGCCGCTACTTGAAGAAGGGCCGCTACTCTCAGCGGGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTTGCTGCAGAGGTGAATTTCTGCTCTGTCTTGTTAGTTTGTCACTTTCGATCACTTAATTTAGGGTTTTTTTAGCTTCTGTTAGAGGATTACACGTTTTGAATGTCTGTGCAAAATCGGAACCGTTGGGTAGTAATCTCTGAGTTTGGGTGATTTTTTTATGGATTGAATGCTTGGATTGAAGTGCATTTTTTTTCTTTCTTTTTGTCATTAGATTAGAATTTGATTTTCTTGCTCCACTTTTTCGGGGATGAAATCCCCAATTTGAAGAATTAGGTATTTTTTTTAATCCTATCTATCTAATCTGTTTTCTGAATTCTTTCTATGGAAAGACAAGTTCCTTCCAAGTTTTAAGACAATCTAGAAAGGTTAAGAATTAAAAAAAGAAAAAGACTTTTTGGTGTTTTTTTTTTCTTCCTAATTTTAATTTTTTAAATTCATATATGGATGTTTTCTTTGATTAGTTCTAAATAGTTTTAAATTAAGGTCGGGTTACAAATTTGGTCTATATGGTTTGGAGGAGGTTAGAATTTAGTCAGAGTCGGAATTAGTCCTATGGATTGATAAAATCCTCATGTATCAAACCTCATAAATTATTTGGACGAATTCTAACTTTTAAAACATGATAAAATTTATTAGCCCTTTTTTTAATTCTATGATATGAAAAACGATTGTGAAAGTATGATCAGAAAACAAAGAAAAATTTTAGTAAATAACTAAATAGGTATAAATTTTATAAGGAGGAAACTAAGAATAAAACTTCATAAAAAAAGGTATTTTAGAGTGCGTTTTGCTAGTGATCTAAAAACAAAAATTTGAAAATGAAGAATTTGATGAAAAATAGGGTTGTATGTTATGTTTTTCGGTTTTTTTTTTCTTTTTAAATATTTGTTTGGTAGAAGATTTAGATTTTTTTCAGTACATCAACATTTGAGGTGGATGTCAGTTGAGCTATGCTCTTGTTGGCATAGAAGATTTAGAGTTTGAACAAACAAATGTTGTTCATAAAATTCTTAATTTTGGAGTTACAGAATCCAAATACTCATCCAAAGATAAAGCCTTGAATTCATTTGATTTAGTGAATCTGAAAACAAGAAATTGAATCTGTGACAGGATACCAACCGTCCTCGGTATGTGCTTTGCTTGCTTTTATATCTCTTTTTCAGCTGTCCTTTAGATTCTGATTCCGATAACGACTTTTTGAATGCCAATTTAGGATTTATTTAGCAAGATTTGTTAATTTTGCCTTTAAAAAAAATGGCTGCTTTGTAATAACAGTTGCCATTTGAGTAGTGGATATGGGTATTCTTGATTCTTTATAGATCTTTGTTTTTAAGAGAAAACATACATTGCCTTCTAAATCCACTTTTAAATAATTTTTTAGGCCTTAGAACTCTTTATTTAGCTTCTGTCCGCTTTTCTTAAAGGAAACATTTGAATTTTAGTCTAATTCCAAAAGCGAAAACAAACTTTTAAAAACTTTTTTTTTTTTTTTAGATTTCAAAATTTGACTTGGTTTTTGAAAATATTTTTGGGAGTAGATAACAAAACAAAGTAATTCATGTGTGGAAGTAGTGTTTATAAACTTAATTTTTAAAAACAAAAAATCAAGGACCAAAATGGTTATCAAATGGAGCCTTAATTTCTCTACTTCTTATTGAGAAAAAACGTTCATCATCAATTAAGTTTAGCAGAATTGTTTTATTCTCGGATGGAATCTTACACATCTATGATAATACAAGAAGTGATATCGTATATTGAATAATTGGGTTATCTGGGGTTAAATAATATTATATGATTCCACAAATTATAATAACTCATAAACCATTATAACTCATGTTATTATAACCCACTCGGCGCCTCAAACAACCCTTAGATTAAATATGTCTAACCTATAAACTTATTTATTTTTTTTTTGTATTGTAGTGATTTAATATGGTATTAGAGCGGGAGATCTTAAGGTCGAATATTTATAACATTGTTTCGTTCCCAATTCATGTTGATAATTACTTGTTAGATTTTGTGCCAATTCTCAAGCCTACGAATGAAATGAAGTATTAACTATTAAGAATACCTACACAAAATTAGATATACTATAACCTATCAGCTTAGGACTAAATGATGCTTTAGGTTTTGGAACTAGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTTTTGGCTGTGAGGAACGACGAGGAACTCGGAAAGCTTCTCGCCGGGGTAACGATCGCTCACGGTGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCTGAGAAGGCAGCAGCAGCAAAGGAGCCCAAGTCCCCTTCCAAAAGCACCAGGTCCCCCAAGAAGGCATAATTTCTCCAATGCCCCACCTACTTAATTCTGTACTTAATTTCTTAGCTGTACTTAGATTGGACTCATCTTCATGTTTAGGACCACTTTATCTGTTTGTGCCTTTATATTGTAGGACACTCCTCTGTTCTCAGTTCTCACAACTCAAGTTGAAAGTTGAAATGATGTATGATTTAACCCCTCTTCTTAATCTTCATCTCTTCCTAAGTGGATTTGTTTTCTATTTTGAACTTTATGACACATTGAATTGGCTTCCATATATGGATTGAATGGTAGGAACAGTGTTTTAAAAAAGTTCGAGGCGTGCGCCTAGGCTCAAGGCATAACCCCTGCATCTCACTCG

mRNA sequence

CACGAATATGGCGTGTGTCGTTCACTTTCCATTTTATTTCTCATTATTTCATTTCAAAATCAAAGTGTCATCTCCGTTGAAAACCCGTCGTTAACCTTCCTCCCATTTTCACCCTTTTTCTGTTTGTTTCTCGAGAAATTTTTTTATCGATGGACTCTGGCGGCAAGGCGAAGAAAGGCGCCGCCGGCAGAAGAGGCGGCGGAGGCCCCAAGAAGAAGCCGGTCTCTCGGTCCGTCAAAGCCGGCCTCCAGTTTCCTGTCGGCAGAATCGGCCGCTACTTGAAGAAGGGCCGCTACTCTCAGCGGGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTTGCTGCAGAGGTTTTGGAACTAGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTTTTGGCTGTGAGGAACGACGAGGAACTCGGAAAGCTTCTCGCCGGGGTAACGATCGCTCACGGTGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCTGAGAAGGCAGCAGCAGCAAAGGAGCCCAAGTCCCCTTCCAAAAGCACCAGGTCCCCCAAGAAGGCATAATTTCTCCAATGCCCCACCTACTTAATTCTGTACTTAATTTCTTAGCTGTACTTAGATTGGACTCATCTTCATGTTTAGGACCACTTTATCTGTTTGTGCCTTTATATTGTAGGACACTCCTCTGTTCTCAGTTCTCACAACTCAAGTTGAAAGTTGAAATGATGTATGATTTAACCCCTCTTCTTAATCTTCATCTCTTCCTAAGTGGATTTGTTTTCTATTTTGAACTTTATGACACATTGAATTGGCTTCCATATATGGATTGAATGGTAGGAACAGTGTTTTAAAAAAGTTCGAGGCGTGCGCCTAGGCTCAAGGCATAACCCCTGCATCTCACTCG

Coding sequence (CDS)

ATGGACTCTGGCGGCAAGGCGAAGAAAGGCGCCGCCGGCAGAAGAGGCGGCGGAGGCCCCAAGAAGAAGCCGGTCTCTCGGTCCGTCAAAGCCGGCCTCCAGTTTCCTGTCGGCAGAATCGGCCGCTACTTGAAGAAGGGCCGCTACTCTCAGCGGGTCGGAACCGGCGCTCCGGTTTACCTTGCTGCTGTGCTTGAGTACCTTGCTGCAGAGGTTTTGGAACTAGCTGGGAATGCAGCAAGAGACAACAAGAAGAACAGGATCATCCCGAGGCACGTGCTTTTGGCTGTGAGGAACGACGAGGAACTCGGAAAGCTTCTCGCCGGGGTAACGATCGCTCACGGTGGGGTGCTTCCGAACATCAACCCAGTTCTTCTTCCAAAGAAATCTGAGAAGGCAGCAGCAGCAAAGGAGCCCAAGTCCCCTTCCAAAAGCACCAGGTCCCCCAAGAAGGCATAA

Protein sequence

MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA

Homology

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BLAST of Tan0006079 vs. ExPASy Swiss-Prot
Match: Q9LZ46 (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.9e-67
Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSG K KKGAAGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAA-AKEPKSPSKSTRSPKKA 153
           INP+LLPKKSEKAA+  K PKSPSK+T+SPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Tan0006079 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-66
Identity = 139/154 (90.26%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MD+G K KKG AG R GGGPKKKPVSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAPVY
Sbjct: 1   MDTGAKLKKG-AGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAA--KEPKSPSKSTRSPKKA 153
           INPVLLPKK+EKAAAA  KEPKSP+K+T+SPKKA
Sbjct: 121 INPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

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BLAST of Tan0006079 vs. ExPASy Swiss-Prot
Match: A2Y5G8 (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MDSGGKA--KKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAP 60
           M+ G K   K GA GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSEKAAA-----AKEPKSPSK-STRSPKKA 153
           PNINPVLLPKK+  AAA      K PKSP K +T+SPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of Tan0006079 vs. ExPASy Swiss-Prot
Match: Q6L500 (Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-62
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MDSGGKA--KKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAP 60
           M+ G K   K GA GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLK+GRYSQR+GTGAP
Sbjct: 1   MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAP 60

Query: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVL 120
           VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVL
Sbjct: 61  VYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVL 120

Query: 121 PNINPVLLPKKSEKAAA-----AKEPKSPSK-STRSPKKA 153
           PNINPVLLPKK+  AAA      K PKSP K +T+SPKKA
Sbjct: 121 PNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKA 160

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BLAST of Tan0006079 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.2e-61
Identity = 129/152 (84.87%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MD+  K KKGA GR+  GGP+KK V+RS +AGLQFPVGRIGRYLKKGRY+QRVGTGAPVY
Sbjct: 1   MDASTKTKKGAGGRK--GGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INP+LLPKK+EKAA     KSPSK+T+SPKKA
Sbjct: 121 INPILLPKKNEKAATT--TKSPSKATKSPKKA 148

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BLAST of Tan0006079 vs. NCBI nr
Match: XP_022143711.1 (histone H2A [Momordica charantia])

HSP 1 Score: 270.4 bits (690), Expect = 9.5e-69
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKGAAGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+AAA KEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

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BLAST of Tan0006079 vs. NCBI nr
Match: XP_004142082.1 (probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_018188 [Cucumis sativus])

HSP 1 Score: 267.7 bits (683), Expect = 6.1e-68
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+AAAAKEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

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BLAST of Tan0006079 vs. NCBI nr
Match: XP_008447608.1 (PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone H2A.4 [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 8.0e-68
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA-AAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+A  AAKEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Tan0006079 vs. NCBI nr
Match: KAE9455642.1 (hypothetical protein C3L33_12460, partial [Rhododendron williamsianum])

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-66
Identity = 142/152 (93.42%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M+SGGKAKKGAAGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKK+EK AAAKEPKSPSK+T+SPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of Tan0006079 vs. NCBI nr
Match: KAG5553850.1 (hypothetical protein RHGRI_011654 [Rhododendron griersonianum])

HSP 1 Score: 262.3 bits (669), Expect = 2.6e-66
Identity = 141/152 (92.76%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M++GGKAKKGAAGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAPVY
Sbjct: 1   METGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKK+EK AAAKEPKSPSK+T+SPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of Tan0006079 vs. ExPASy TrEMBL
Match: A0A6J1CR43 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.6e-69
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKGAAGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+AAA KEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAAAGKEPKSPSKGTKSPKKA 151

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BLAST of Tan0006079 vs. ExPASy TrEMBL
Match: A0A0A0KXF2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.0e-68
Identity = 144/152 (94.74%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG   KKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGADSKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+AAAAKEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAAAAKEPKSPSKGTKSPKKA 152

[Close]

BLAST of Tan0006079 vs. ExPASy TrEMBL
Match: A0A5A7U1I6 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.9e-68
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA-AAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+A  AAKEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Tan0006079 vs. ExPASy TrEMBL
Match: A0A1S3BHV2 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.9e-68
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSGGKAKKG AGRRGG GPKKKPVSRSVKAGLQFPVGRIGRYLK GRYSQRVGTGAPVY
Sbjct: 1   MDSGGKAKKGFAGRRGGAGPKKKPVSRSVKAGLQFPVGRIGRYLKNGRYSQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKA-AAAKEPKSPSKSTRSPKKA 153
           INPVLLPKKSE+A  AAKEPKSPSK T+SPKKA
Sbjct: 121 INPVLLPKKSERAGTAAKEPKSPSKGTKSPKKA 153

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BLAST of Tan0006079 vs. ExPASy TrEMBL
Match: A0A6A4LE10 (Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.6e-67
Identity = 142/152 (93.42%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M+SGGKAKKGAAGRR GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAPVY
Sbjct: 1   MESGGKAKKGAAGRR-GGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRI+PRH+LLA+RNDEELGKLLAGVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIVPRHLLLAIRNDEELGKLLAGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           INPVLLPKK+EK AAAKEPKSPSK+T+SPKKA
Sbjct: 121 INPVLLPKKNEK-AAAKEPKSPSKATKSPKKA 150

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BLAST of Tan0006079 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-68
Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSG K KKGAAGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKSEKAAA-AKEPKSPSKSTRSPKKA 153
           INP+LLPKKSEKAA+  K PKSPSK+T+SPKK+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

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BLAST of Tan0006079 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-64
Identity = 138/177 (77.97%), Postives = 145/177 (81.92%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           MDSG K KKGAAGRR GGGPKKKPVSRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVLEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAVLEYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 VRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEKAAA-AKEPKSPSKSTRSPKKA 153
           VRNDEELG LL GVTIAHGGVLPNINP+LLPKKSEKAA+  K PKSPSK+T+SPKK+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

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BLAST of Tan0006079 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-53
Identity = 117/153 (76.47%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MDSGGKAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVY 60
           M+S GK KK   GR+  G PK K VS+S+KAGLQFPVGRI R+LKKGRY+QR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPN 120
           +AAVLEYLAAEVLELAGNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKS-EKAAAAKEPKSPSKSTRSPKKA 153
           IN VLLPKKS  K A  K  KSP K   SPKKA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVK---SPKKA 150

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BLAST of Tan0006079 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-50
Identity = 110/147 (74.83%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 6   KAKKGAAGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVL 65
           K  +GA GR+  GG +KK VS+SVKAGLQFPVGRI RYLKKGRY+ R G+GAPVYLAAVL
Sbjct: 9   KPTRGAGGRK--GGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVL 68

Query: 66  EYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVL 125
           EYLAAEVLELAGNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVL
Sbjct: 69  EYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVL 128

Query: 126 LPKKSEKAAAAKEPKSPSKSTRSPKKA 153
           LPKKS  +++  E  S   +T+SPKKA
Sbjct: 129 LPKKSTASSSQAEKAS---ATKSPKKA 150

[Close]

BLAST of Tan0006079 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 174.1 bits (440), Expect = 8.6e-44
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 13  GRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPVYLAAVLEYLAAEV 72
           G++ G G  KK  SRS KAGLQFPVGRI R+LK G+Y++RVG GAPVYLAAVLEYLAAEV
Sbjct: 5   GKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEV 64

Query: 73  LELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKSEK 132
           LELAGNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+  
Sbjct: 65  LELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS 124

Query: 133 AAAAKE 139
           +   +E
Sbjct: 125 SKPTEE 130

The following BLAST results are available for this feature:

BLAST of Tan0006079 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ46	1.9e-67	90.20	Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1	[more]
Q9M531	1.2e-66	90.26	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
A2Y5G8	1.1e-62	84.38	Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3...	[more]
Q6L500	1.1e-62	84.38	Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 ...	[more]
Q2HU68	1.2e-61	84.87	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]

BLAST of Tan0006079 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143711.1	9.5e-69	96.05	histone H2A [Momordica charantia]	[more]
XP_004142082.1	6.1e-68	94.74	probable histone H2A.4 [Cucumis sativus] >KGN54228.1 hypothetical protein Csa_01...	[more]
XP_008447608.1	8.0e-68	94.77	PREDICTED: probable histone H2A.4 [Cucumis melo] >KAA0047349.1 putative histone ...	[more]
KAE9455642.1	1.2e-66	93.42	hypothetical protein C3L33_12460, partial [Rhododendron williamsianum]	[more]
KAG5553850.1	2.6e-66	92.76	hypothetical protein RHGRI_011654 [Rhododendron griersonianum]	[more]

BLAST of Tan0006079 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CR43	4.6e-69	96.05	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111013553 PE=3 SV=1	[more]
A0A0A0KXF2	3.0e-68	94.74	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_4G293870 PE=3 SV=1	[more]
A0A5A7U1I6	3.9e-68	94.77	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001750 P...	[more]
A0A1S3BHV2	3.9e-68	94.77	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490019 PE=3 SV=1	[more]
A0A6A4LE10	5.6e-67	93.42	Histone H2A (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_12460 PE...	[more]

BLAST of Tan0006079 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	1.3e-68	90.20	histone H2A 12	[more]
AT5G02560.2	1.5e-64	77.97	histone H2A 12	[more]
AT5G59870.1	2.7e-53	76.47	histone H2A 6	[more]
AT5G27670.1	1.2e-50	74.83	histone H2A 7	[more]
AT4G27230.1	8.6e-44	71.43	histone H2A 2	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 23..45 score: 69.23 coord: 81..95 score: 73.78 coord: 109..127 score: 75.79 coord: 52..67 score: 86.43 coord: 67..80 score: 89.46
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 12..132 e-value: 7.6E-79 score: 277.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 25..127 e-value: 8.18351E-66 score: 194.091
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 21..98 e-value: 1.3E-12 score: 48.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 9..138 e-value: 1.8E-63 score: 214.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 15..136
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 101..134 e-value: 6.3E-19 score: 67.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..147
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..147
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 31..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0006079.1	Tan0006079.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity