Tan0005999 (gene) Snake gourd v1

Overview
NameTan0005999
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
LocationLG03: 21084658 .. 21091714 (+)
RNA-Seq ExpressionTan0005999
SyntenyTan0005999
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACATGTCATTTTCTGTTGTCGACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGAGTAAATGTTGGTTGTACTAAGCGTGTCCTGTGCAACGTAGAATGTCATACGTTTTTAAATGATTAGTAGTATCGATATGCCTTACGAAATTTTAACGATATACTTGCTAGTTTTCATGAAAAGCTATTATGATTACACAGTTACTTTTAACATTTGATTACAGATGCATATGCTCATAGATGGCCAGGTGATATGATTTACGAGTTAATAGTTTTTTTTTAAACTCAAGTCACTCACTGAGCTTCATAGCTCATCCTTTCAGTATTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATAGTCTGCTGGAAGCTCCAAGAGTTTGATACTTTGTACGTGGGTGGAGATGTATAGGAAGTCTATATGTATTGTAGAAGGACTATAAGGTTATGTTTATGTGTACATTTTAGGTTGTCGTTGTGTGATCCATGGTTGGGTATGTTTTTGGTTGTGATGTTCATATCTCTTTCAGTTTTCCAGAGAGTCATAAGTAGGGTTACCCCTTTACGTAGGTTACGTAATTGTCAATATTCCGCTGTGTTATGTTTAAGTGTTTCTTATACAAGTCTAGTATGCTTATTAGGTAAAACAGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCATCTACCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAAGTGCTGTCTCTAAGGCTTGAACAACGGGGCCCCACTCTCTCATTGGCCTGAGAGGGTTGTTCTTTATGGTTGGACCATGCAACGTAGTTGTTCATTAGAGGAGCAGTGGGACTTAAGGAGCAAGAGGTAGACACAGTGGTAAAACGGTAATTTGACCTACCAGTGTCTACGAACAACCAGTGAAGGGTCGACTCATGGGTATTGGTTATATCGATGGACACAACTTGTCCTACAGTGATGAGAGTGCAGCTACGGGCTTTAGTGGAGTGTTACCGTAGCTAATGAATGTTGAATAACCGGGTCAAAGAGTTTGACAGGTTAGTCTCGGATCATTGAAGCTCGTTACGTGTAGGTCCATTAGGTCCCTCGGTTGGCTCAAATTGGACAAATTGAGGGTTTAAAGTTTGGTGTGAATTTGAAGTGTTCAAATTCATTATTTGGGTATTTATGTTGTTTATATGAGATATAGATGACATAAAATATAGTTTGATGTGAATGAGATTCATAATAAACTGTAGTATAGCCTAATTGATTAATTAGTGCTATTTGGAGAAATTCAATTGAGAGAAATTAAATTGAATGTGATTCAATTTAAAATTCCACATTTATGCAAATGAGATTTGTATAATAAGGTATGATATACCTTATATTATGTGATATGCAAATATGATTTGTATATCATATACTTGTGGTAAAATGGTGAATTGGTGGAGGTTTTAACTCCACCACACACCATTATAAAAGGATGCATTCAAAGGCATCTCATAAGCCTTTTTGCCATTTTTTGGATTTTGATCCAAAGAGAGCAAGACAATTCTCTCTAGAACTCTCTAAATTCTCTCTAAGATTTCTCCTCACTCAAAACCAAAGGGAGTCCCACCTACTCTCCCTCAACCTCCCGAGAACAATCGAGAAGACCCTGTGGAGGTGTCTTGCTGTTCGGATCGAGGTTCGTCGTCGAGGAGATCGTCCGTTCGAGAAAGATTGTGACCGGAGGAGGAAAGTATTGAAGAAGAGTTCTTCAACAAGTAAGTAGCATATACCTTACTGTTTTCTTCTCCTTTTTATGCATGTTTAGCCTAGGATCTATGAGATAGATTCAATTTTAAGATAGGAATTACACAACGAAACAACGACGTTTCATAACGTCTTCCGCTGCGGAAATTCCAAATCCCTTCATCATCTTCGTCGATATGTGAAGACGAAGCTCTCGCTGCCGTCTGACTCACCTGAAGTCGGAGCTCTCGCCGCCGTTTGAGTCGCCTGAAGTTGCTGAAGCTCCTCGTCGACGACCGAAAAAAAGCAAATCGCCTTCGTCTCCATCGACTGACCGAAGCCAAGCTCTCGCCGCATCTTAGTCACCAAGTCGATCTCACCGCCGTCGATTTATCAAAAAGCAACTTAGTCAGATCTCACAGCTGGATCTCGCAGCCCCTCGTCGACAATCTCACCGTCGTCTGAGTCGAATCTTACATTCGGAGATCTCACCGCCGTCTGAAGCAACTGAGTCGGATCTCACAGCCGGATTTCGCTGCCCCTCGTCGACGATCTCACCGCCGTCTGAGTCGGATCTCACAGTCGGAGATCTCACCGGCGTCTGAAGCAACTGAACTGGATCTCACAACCGAATCTCGCAACCCCTCGTCGACGATCGAAAAAGCAACTGAGTCACTTGAAGTTGTCGACCTGAAGCTGGAGCTGTTGTCGTTGTCTAAGTCGCCTGAAGTGGTCAGAAATCATTCTCTGCCACCGTCTGCAAGCCATCGACGATTGGATAAGCAACCTCCACCATTTTCAAGCCGTCTGTATTCGGGTAAATATGCATGCCTCTAATTTATGAAGATTTTTTTAGGATTTGAGACACTGTTTAGAATATTTGAGAATAAAAAGTTCCAAATTCCAACATATATTTCTCGATTTTCCTTGTGACTCTGTTTAAAATTTTATGAATTTTGGTATTGTGTGTTTGCCCAAGGGTTGATACAAGCATGTTGCCCTCAAGTGTTGTCAATTAGTTCTCGATAATTAGAAGAATTTTCAGAACATTTACCTTTAAGTTTAATTCTTAGCACACACTTTATAAGTGATATTATTTGAGAGTTTTGTTTTGCTATGCTATTTTTGTGAGAAACTTCAATATCTAAGTTAATTTTAGTAGTAAAAGGTTGTTGGGTGTTGTCAGTAAAGTTAAATAGGACTACATAATTTCGAGAAAGACGTGGACTTTAGAGTTAGCATGCATTTGATAGTTTAATCCAAAAGGTTCATCACGTTAACGTATTGCATTCTGACCTTTCCTCTACCCTAGAACACTGGTTCTTTGGAGACTTCCTTTGAGGCTTTCAAGAGTCGTTTGATCTTAACCATGTATTAACTTACAATTTTGAGTAGTTATATGACGAGCACTGTCTTCAGATATGTGGCTTTTGGTTATTTTTCTTTTCTTTGGTTTATATGTTTGATTGATCCATCTCTTCGTTGACTTAGGAAGCTTTCGAATTTGGAAGAATCATTCGAAGTCGTTCGATCTCCAGGTTGGTCCAACTGTTGGAGTTATTCTCACGCCGAAATCTTCCCTCACCTCTCGTTGGAACATCACATCGGTAAGTAAAGTACAATGACTATAAGTTGAATTTGAACAATTACTATTAGTTGGGTTTCTTGATATAGAACTATGATTATGATTTTCTTATATTTGATTGCATGATTACAATTTATGTTCCATTTTAGGGTGGATTATTTTGTATGGTAGTGGACCACTTTTTAGTTTTACCCAACTTCTTAATGAATTATATGAACTATTTATCTAAATTAGAAGAGCATTAATGAATGTGATACTGATAATTTCAGTACACCGTTCCATTCTCAGACAGATGGTCAATCAGAGAGGACCATCCAGACCTTAGAGGACATGTTAAGAGCATGTGTCCTTCAGTTTAAGGGAAGTAGGGATACCCACTTATGAATTATGGAGTTCGCTTATAATAACAACTATCAGTCTAGTATCGCATGACACCGTTTGAGGCTCTATATGGAAGACCATGTAGAAGGCCCGTGTGTTGGACGAGGTGGGGGAGTGGAAGCAAATCGTTCCTGAGTTGGTACAAGTTATGACGGATAATATTAAAGTGATTAGAGAGAATCTGAAAGTGGCCCAAGATTATTAGAAGAGCTACGCAGACAAGCGACGAAGAGACTTAGAATTCCAGGTCGGAGATCAAGTTTCCTTGAAGTTATTTCCATGGAGAGGTGTCATTCCGCTTTGGCAGGAAAGGTAAGCTGAGTCCTAGATATATTGGTCCTTATCAGATAACAAAACGAGTTGGGCCAACAACCTACAAACTTGAGTTGCCAACAGAACTGTCTCGAGTACATGATGTTTTTCATGTGTCCATGTTGAGGAAGTATATTCCAGACTCGAAATATGTGTTGCAATTACATAGACGATGCAGTTCAAATCTTTGATAGGAAAGAACAAGTTTTGAGAAACGAGACGATCCCACTCGTGAAGGTTCTTTGGAGACAACACGGAGTGTAAACCCGAGATCTCTCCTTGAAATTTCCTTAAAAAAAGAAGAAAAGAAAAAAGAAAAGAAAAGCTATGTTTGATATGTAATGTTTTGTTTTAAAAAGAAAAGAAAAGAAAAAGACAAAAGGAAAAGTTAAAATGGGTATAAGACAAAAGAAAAAACAAACTCAACTGTCTATCTTTTTAAGTAACTCATTTCTCTCCATTTCCTTCTCATTTTAACAAAAAAAAGCTGAGGGTTTCGTGGGAGAAGGACGAAGGAAGAGGAAGGATGGGTTTTCTAGAGTTGAAGTTGCAAAAGAAAGGAGGAGAACTCAATGTATGTTGGTATAGCAACAATGTAATCAATTCTGCCAAGTTCTGTTATTTGAATCACTTAGAGCTCCACAAGAAGAGATAAGAGGTGAGGTTTGATTTTCTTGAAATTTAATTCATGTTGGAACAAAATTTGTGAAGGAAGCTCGAGCAAATTCCGATCTTAAGTTACTGATTTGTGAAGAGAAAGGCAGAGGAGAGAATTTGCTGTCAAATCTGAGAAACCTTTGTTTTTTGGGTCGTGCTGATCAGTAGGATTTGAATCAGAAGGTCTAATAGGTATGATTGGAAAGCTTATTTCATTTCCTACAACTTTCACGAAGAACTAGTGAGTAGAAATCGACTGGAAGATATTTAAAATTTTAGGTCAATTTCGAGTTGCACCAGGGAAACGAATCTGGAATAGCAAAAGTTTATTTTTGGGGAAGAAGCTTTCAAGGTATTTTCGAACACATTCGTTGGGAATCTCAATTTTATTTCTTCATATGAATTTTAGAGGGTTCAAAGAGGAAGAGTTTGGTATAAAGTACATCCTTTTTGGCTAAGTATTTTAGAAGTTACGATTGTCTGAAATAAGTGCATGAAATTTGTAAAATGCTGGAAAAATAGTAGAGTGGTTTTTGTAATTTTAAGGTTGAAATTCATGAGCTCGACGTTCTAATACTTGGATTTGGTTTGTTTGACAGGCCAAGAGGAAATAGTTCGAGTGTACGGACAAGAGTTCTAGTTCTAACACTGTGAGTGACAAAACGAACTTCGAAAACGATTTATATGCTTAAATTAAGCTTAAGGAAACGCATGATTTCTCTTGAATGAAATGGTCTTAATGCTTTATGTTCCCTTTTGGAACACATATTTATAAGAATTCATGTTTTCCTACTAATGATTTTAAGTGCTCGTTTTGAGCCTAGATGTCTTGATGAAATTTATTCGTGAGCATATGTTTATTGATTACCGAAATTTGGTGAAAATGTTATGATTTCAAGCAAGCATGTACTAGCAAGTATGATTTAAAGATTTTTAGTTTTTATGAACGAGCTGAGTAAGCTTGAGTTTTATGAAAGAAAAGTTAAGCAACATAAAAATTAAGCAGACATGTTCAAATATTTTTATGTGATTTCTTGAGACTCGATTGAGTAAATGACTAAGATATTGAGCCCGAGGTTGTATAGTACCGTGTGCACACAAGTCATATTCTGTTGTCAACGTTGAGTGTACTCCGTGACAACAATGCTGTCGTGAGTGCTTGGCGAGCCCCACTACGACAAAGACGATGGGAGTTTTGGGCGGGCCCCAGTACATCGTAGAATAAACGTTTGTTGTATTGGGCATACCCTACACTACGTAGATTTTCATATGTTCTATATAGGTTAGTATTATCGATATGCCTTGCGGAATTTAAATGTCATGCTTGTTGGATTTCTGAAAAGCTATTATGATTCCACGTTTACTTTTAACGGTTGTTTACACATGCATATGCTCATAAGTTTCAAGGTGATATGTTTTACAAGTTCTAGATTTTAAACTCAGTCACTGATTGAGCTTCATAGCTCATTCTTCAGTGTTTTCCAAACCTTTCAGGTAGAGATCGAGCTCCTTGTACCTGACATCCTGCCATAGTCTACTGGAAGCTCCACGAGCTTGATATTTTGTACGTGGGCAGAGTTGTATAACAAGTCCATATGTGTTGTAGTTAATTTTGAGGGGACTATGTAGTTATAGTTGTATGTGCTAGTGGTTGTGGTTGTGTAATCACTGGTTTGGCCTGTTTTTGGTTCTGATGCTCTTTCCTGTTTTAGTTTTCAAGAGAGACTTAAGAAGAGTTTCTCCTTATGTATGTTTAGTAGTTGTCAGGTTTTCGCTGTGTTATGTTAAAGTGTTCCATATGCGAGCATAGTATGTTTATCAGGTTAAAAAGGGTGAACAAGTATTGTTAGGAGGTAAAAAATGTCTGTTGGCTTCATGCCGTCTTCCGGGCTAAGTTAGCAGGTAGTACGGAAGGGGGTGTGACAACTTGGTATCACAACAGTTAGCTCCATGGGGAATGTGATAGAGCAAGTTAGCACTAAGAAGAAAATGTGATAGAGCAAGTTAGCTCTAAGAAGAAACTAAGGAGTAATAGAAAGTTATTGAGTTTGTTCAGAAAGAACTAGTAGAGTATGGTCCAAGTAATGATAAGATTAAGTCCAGTTAGGGATAAAATGTGAATAGAAGTTTAGTATATTGTGTATTTGAGTTAAGTATCCAAAGTATGTCGAATGTGTTGATATATTATAGGAGTCATGCCACCACATACTAGTAGACGACGTAGGCAGGATCAGGGCGGGACGCAGGATCCTTCCCAAGGCCAATTTGAGAGGGGATCTAGTGCCCTGA

mRNA sequence

ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACATGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATACTACGCAGACAAGCGACGAAGAGACTTAGAATTCCAGGTCGGAGATCAAGAGTCATGCCACCACATACTAGTAGACGACGTAGGCAGGATCAGGGCGGGACGCAGGATCCTTCCCAAGGCCAATTTGAGAGGGGATCTAGTGCCCTGA

Coding sequence (CDS)

ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACATGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATACTACGCAGACAAGCGACGAAGAGACTTAGAATTCCAGGTCGGAGATCAAGAGTCATGCCACCACATACTAGTAGACGACGTAGGCAGGATCAGGGCGGGACGCAGGATCCTTCCCAAGGCCAATTTGAGAGGGGATCTAGTGCCCTGA

Protein sequence

MTETLSPRLYGTVCTHVEIELPVPDNLPYYADKRRRDLEFQVGDQESCHHILVDDVGRIRAGRRILPKANLRGDLVP
Homology
[Close]
BLAST of Tan0005999 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 46  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP 78
           ESCHH+  DD GRIR GRRILPK NL+GDLVP
Sbjct: 184 ESCHHVPADDAGRIRTGRRILPKVNLKGDLVP 215

[Close]
BLAST of Tan0005999 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 46  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP 78
           ESCHH+  DD GRIR GRRILPK NL+GDLVP
Sbjct: 184 ESCHHVPADDAGRIRTGRRILPKVNLKGDLVP 215

[Close]
BLAST of Tan0005999 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 46  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP 78
           ESCHH+  DD GRIR GRRILPK NL+GDLVP
Sbjct: 184 ESCHHVPADDAGRIRTGRRILPKVNLKGDLVP 215

[Close]
BLAST of Tan0005999 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 46  ESCHHILVDDVGRIRAGRRILPKANLRGDLVP 78
           ESCHH+  DD GRIR GRRILPK NL+GDLVP
Sbjct: 184 ESCHHVPADDAGRIRTGRRILPKVNLKGDLVP 215

The following BLAST results are available for this feature:
BLAST of Tan0005999 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0005999 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062409.17.5e-0678.13reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.17.5e-0678.13putative Retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Tan0005999 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9N33.6e-0678.13Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY73.6e-0678.13Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
BLAST of Tan0005999 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005999.1Tan0005999.1mRNA