Tan0005877 (gene) Snake gourd v1

Overview
NameTan0005877
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG10: 67745427 .. 67747098 (-)
RNA-Seq ExpressionTan0005877
SyntenyTan0005877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGTCTATGGGAAGCCAGAAACAAATCTCTTATACACAATCTCCCTCCCAATAAAGAGCTTATCATTAAGATGATAGAGACAAGTACCTGTCATGGTGATATCCATACCTCTCTCAGCTCTTCCGGCAAGTCCTCGAAGACCCTGGCGAGTCACAGAATTTGGGATCCTCCTCCAGCCGGTTGGTGGAAACTGAACACCGACGCGACCTAGTTTGAAGAAAAACAACAAGGTAGCTTAGGTTGGATTGTCCATGACTCTTCAGGTTCTCCGATATACTCGGGCGTTCAATCGACCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTGGGCTTAAAATGCTTGAACGTTCTGGTTCTCGACTCTCACCTTCCTATCAACGTCGAATCGGATGCGACGAAAGCGATCAACTTGGTCAATGGAATCTCCGAAGACCTCGACGAAGCCTTTTCTTTAGCTTCGACAATCAAGGTCGCAACCTCCTCTTTCGGCAAAGTTACCTTTGCATGGTGCTCTCGAGAGAAGAGAACAAATCGCCGCCTCAATTGTCAAGACTTCTTTTTCCCCCAATTTTTTGTTGGATCAAAATCGATCTCCTTATACGGAGAACGAGCCTCTGGTTTGGTCCCCTCAGGCCTTTTTGTATTGCCTCTGCTATAAATGAGGTTGTTGCGGTTGGTTCTAATTTTTAATGAATTGCCTTTTCTTTCAAAAAAAAAAAAAATTAAAGCTAATGGACAATAATAATAATAATAATAATAAATTTAACATAAACATAATTTAACCTACTTTTTACAATCTCGCCATAACAATACATGATACACTTTCTTAATTCGTGAAGGGTTACGGTGGCAGCCCCTCCCTCTCTCACTCCCTATTGTTTAACGATTTGTCGGCCCGACGATCCCCTCCCTCCGTATCAGCCATATCAGGTAATCTTTCAAACGTTCACGGCCCGACGCCGGTAGGGTGAACATTGGTTCGGTTCCCGATTCCGGTATTCTTCTATACAAATATTTTTCCATATTCACTAGGAAAGTCTGAATGATATTCTGATTTCTAATTCAAATATTCCATATGAGCCTTCAAACCCTAAATTAAACCCCTACAATTTCTAACGAAGACCCTGGCGAGTCACAGAATTTGGGATCCTCCTCCAGCCGGTTGGTGGAAACTGAACACCGACGCGACCTAGTTTGAAGAAAAACAACAAGGTAGCTTAGGTTGGATTGTCCATGACTCTTCAGGTTCTCCGATATACTCGGGCGTTCAATCGACCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGTCATCCTCCTAGGCTTAAAATGCTTGAACGTTCTGGTTCTCGACTCTCACCTTCCTATCAACGTCGAATCGGATGCGACGAAAGCGATCAACTTGGTCAATGGAATCTCCGAAGACCTCGACGAAGCCTTTTCTTTAGCTTCGACAATCAAGGTCGCAACCTCCTCTTTCGGCAAAGTTACCTTTGCATGGTGCTCTCGAGAGAAGAACTCGTCTGCCCCCAACTTTCAAGACTTCTTTTTCCCCCAATTTTTTGTTGGATCAAAATCGATCTCCTTATACGGAGAACGAGCCTCTGGTTTGGTCCCCTCAGGCCTTTTTGTATTGCCTCTGCTATAA

mRNA sequence

ATGTGGAGTCTATGGGAAGCCAGAAACAAATCTCTTATACACAATCTCCCTCCCAATAAAGAGCTTATCATTAAGATGATAGAGACAAGTACCTGTCATGGTGATATCCATACCTCTCTCAGCTCTTCCGGCAAGTCCTCGAAGACCCTGGCGAGTCACAGAATTTGGGATCCTCCTCCAGCCGGTTCTCCGATATACTCGGGCGTTCAATCGACCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTGGGCTTAAAATGCTTGAACGTTCTGGTTCTCGACTCTCACCTTCCTATCAACGTCGAATCGGATGCGACGAAAGCGATCAACTTGGTCAATGGAATCTCCGAAGACCTCGACGAAGCCTTTTCTTTAGCTTCGACAATCAAGGTCGCAACCTCCTCTTTCGGCAAAGGTTACGGTGGCAGCCCCTCCCTCTCTCACTCCCTATTGTTTAACGATTTGTCGGCCCGACGATCCCCTCCCTCCGTATCAGCCATATCAGGTTCTCCGATATACTCGGGCGTTCAATCGACCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGTCATCCTCCTAGGCTTAAAATGCTTGAACGTTCTGGTTCTCGACTCTCACCTTCCTATCAACGTCGAATCGGATGCGACGAAAGCGATCAACTTGGTCAATGGAATCTCCGAAGACCTCGACGAAGCCTTTTCTTTAGCTTCGACAATCAAGGTCGCAACCTCCTCTTTCGGCAAAGTTACCTTTGCATGGTGCTCTCGAGAGAAGAACTCGTCTGCCCCCAACTTTCAAGACTTCTTTTTCCCCCAATTTTTTGTTGGATCAAAATCGATCTCCTTATACGGAGAACGAGCCTCTGGTTTGGTCCCCTCAGGCCTTTTTGTATTGCCTCTGCTATAA

Coding sequence (CDS)

ATGTGGAGTCTATGGGAAGCCAGAAACAAATCTCTTATACACAATCTCCCTCCCAATAAAGAGCTTATCATTAAGATGATAGAGACAAGTACCTGTCATGGTGATATCCATACCTCTCTCAGCTCTTCCGGCAAGTCCTCGAAGACCCTGGCGAGTCACAGAATTTGGGATCCTCCTCCAGCCGGTTCTCCGATATACTCGGGCGTTCAATCGACCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTGGGCTTAAAATGCTTGAACGTTCTGGTTCTCGACTCTCACCTTCCTATCAACGTCGAATCGGATGCGACGAAAGCGATCAACTTGGTCAATGGAATCTCCGAAGACCTCGACGAAGCCTTTTCTTTAGCTTCGACAATCAAGGTCGCAACCTCCTCTTTCGGCAAAGGTTACGGTGGCAGCCCCTCCCTCTCTCACTCCCTATTGTTTAACGATTTGTCGGCCCGACGATCCCCTCCCTCCGTATCAGCCATATCAGGTTCTCCGATATACTCGGGCGTTCAATCGACCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGTCATCCTCCTAGGCTTAAAATGCTTGAACGTTCTGGTTCTCGACTCTCACCTTCCTATCAACGTCGAATCGGATGCGACGAAAGCGATCAACTTGGTCAATGGAATCTCCGAAGACCTCGACGAAGCCTTTTCTTTAGCTTCGACAATCAAGGTCGCAACCTCCTCTTTCGGCAAAGTTACCTTTGCATGGTGCTCTCGAGAGAAGAACTCGTCTGCCCCCAACTTTCAAGACTTCTTTTTCCCCCAATTTTTTGTTGGATCAAAATCGATCTCCTTATACGGAGAACGAGCCTCTGGTTTGGTCCCCTCAGGCCTTTTTGTATTGCCTCTGCTATAA

Protein sequence

MWSLWEARNKSLIHNLPPNKELIIKMIETSTCHGDIHTSLSSSGKSSKTLASHRIWDPPPAGSPIYSGVQSTNTCWSIKILELKAILLGLKCLNVLVLDSHLPINVESDATKAINLVNGISEDLDEAFSLASTIKVATSSFGKGYGGSPSLSHSLLFNDLSARRSPPSVSAISGSPIYSGVQSTNTCWSIKILELKVILLGLKCLNVLVLDSHLPINVESDATKAINLVNGISEDLDEAFSLASTIKVATSSFGKVTFAWCSREKNSSAPNFQDFFFPQFFVGSKSISLYGERASGLVPSGLFVLPLL
Homology
The following BLAST results are available for this feature:
BLAST of Tan0005877 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0005877 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0005877 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0005877 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 180..269
e-value: 4.9E-8
score: 32.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005877.1Tan0005877.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity