Tan0005870 (gene) Snake gourd v1

Overview


Name	Tan0005870
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	LG07: 20102462 .. 20110416 (-)
RNA-Seq Expression	Tan0005870
Synteny	Tan0005870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATTTTGGTGGCATTAGGAACGGAAGACTCGAGCGATGAGATGGTAATATGAAAGAGGGAAAAAACGAGAGCCCCCAAATCAAATCCCTAGCCTTTTGCAATTCGCTAGCCCTAGGCCCCAAATCGCTATGCCGTCATTGGTAATATGTATTTTTCAGGTCTTACAAGCCCTAGCTGCAGCTTCCGCCATCTCTTCCTCTTCTTCCACCAGCAACTCCAATCTTCCTCCACCTCCTAAAGATGCATGAAGTCTTGTGTACCAACGACTACTTCCTCGATGGAAATCTCTCTCTCACTCCCACCTGGTACCTTCGTCTCTCTGCCTCTCCCTCTCGTACTAAACCTAATTTTATCTTCTTCTTTGGAACCATGTTTTATTTGTTCGTACTTCCTCGCTGGAAATCTCTCTCTCATTCCATTTGTGTTAATTAAGCTTCGCTTACTGTTTATTCTGTCAATCATGTCATGGCAAGAGTTAGATTTTATTGTAGGTGCCCCTTGATATTGTATATGTATGTAATTTGTTGTTCTAATTTGCGATACCTCATTTGTTCCTTTTTTTTTGTCTTATCTATTATGTAGTCTCCAATTCGAATTTCGATATCAAAAGTTGATCAAGTGGATGCAACGCGGTTAGATATTGAAATGTCGGCCATGCTGAAAGAACAACTGGTTAAGGTTTTTGCTTTGATGAAGGTATGGGTTACTTGTTATTTTGACATTAAAATGTAAATTCTTGATTGTAAAGTTATTTAGGATTCATTCAGTATTGTCTTCTACTTTGATGGATTAGCTAGGAATGTTGTTTCAATATGAAGCAGAGTTTGATGCTTTTTTGGAGTTCCTTATTTGACACTTTTCAATTTAGATAGGCAAGCCCACACCGAGAATTTCTCTCATTAATTTGCAGTATAGAGATGAGCGTGCAATAAAAATTCCACGAAAAGGTAAGGTGGCCTAAACAACTCCTACTATGTTGCTTCTTTAACTGATTGTTATGGTATGGATGGTGTAGGAATATAATTACATTTATCCAAATTTGACAAGTAAGAAAAATAATTATAATTCAATTTGAAGTTTCTAGAATTAAAATTCAAACAACCATGAAATTGCAATATTCATGATTCTTGATATGTTTTTTAGAGGGATCGCGCCCATGTGTATATGGTTGTGTGTAGTTGAGAGTTGGAACAGCTTGTTAGAACTTGGTTAAAGATCAATCTTGGAATGCATGAATGACTTTGATTATAATTTATGTTTAGACATGCATGAATGGATAGTTGGTTTAAAATAAATGAACGTAAGAGAATGGATCATTTGAGATGTTTGGTTAACTGCAAAATTTTGTATACTTGAGCTATTTGAATGAATGGTTTGATAACGTCTACTTGAGGTGTTGGGGTGTTTAATCGAGCACGAAATTCCTGAAATACTTGAATGATTGGATGAGGACAATAGAAATATCCATAAAGTATACCTTATAGGTTATCCAAAGTATACTAACTTATTGATAAGAGTATGCTGAAAAATAATATGTCAAAGATAATCCAATGGTTGTGCTTATAAGTGATTGAGTATATGGAAAAGGGAAAACTTTTTATCTTATGTTATAAGATATCATAGAGTTTTGTGCCATAGTAGATATATCAAATAGCTGCATATTAGTCTATATCGCATACATAAATTTTTTAATAATATTATACACTATTTATATCTATTAAATTATATATAATCTGATGTATTTGTGTAAAAATTTGTGATAGATGCAAGTTTCTTTGGAAATACTTTCAAGAGACGGAAAGACTAAATATGTTCAGAGTAGTAGAGTTCAAACAATCTTGCACCATGTTTTGGTACACTGATGAAACCACGATAGACAATACTAATTTCATACAATCCTAGGTAAGAATCTAAATAATTCACTTGGTTATATCTAATATTGTTTTATTTTGATAGTGATAATTGCACATATATTGGTTGGTAATTTTTTCCCCATGTGTCCCTCTCAATTTCTTATCTCGTCATTGTCATTGGTTGCAATTGGGCCATAGTTTTCAGTGACCCATTGGAATTGTGCTCATATGTTTGGTCTCGGTTTTCACATGTTCTAAGATGTTTAAGTTTAATTTCAAAAACTGTGTAAAATAGTAAATTCCCTACCTTGTAGGAGTCGAGCAAGAGCATACAGTTAGAAGCATTTCATGTTTTTAAGGTAATGGTCTCTCAAATTAACCTTATGATGAATTTGAAGTCTCATTGAATCATGTTTATACGTCAACAACTTCTCGTTGCAAATCAAAACAAACCCGCTGATATAGTTGGCATCCTTATTGAGGTTAAAAGCCCACCTTGTGAAACATGCAGACAAAGCCCACAAAGGATTGATCCACTCTCCAAGAGCCCTGTTATTGGTGAAAGGAGCTGGCCCAAAGGAATACATCTAGAATGTTCACACCAACAAATTTGTTAGGAGGATTCCTCTTTCTCCTCTAAGTTTTTGCCATCTGTCCCTTGTTTGTTACTCTCAGAATTATTCTTTTATTATTTTATTCTTTGGCTCTTCTGCCCTTATATAACCGATGTATTATTATCGAGAAATGGTGAATAGAAATTGAGGCTTCCTCACAATTTTCTCTGTGTTAATTCTCAAACTTGGTATCAAAGCTTCAATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAACAGTCCACCACTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGAAAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGCCTTGCCCTCCTATGTTTCTATCTCAAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTTTAGCTCAGAATCAACTACATCAATCAATCCTCTCTATGAAGCATGGATGACAGTTGATCAGCTACTGATCAGTTGGCTTTATAATTCAATGATTTCAGAAGTCGCAACACAGGTTATGGGGTGCAACACGGCCAAAGACCTGTGGGATGTTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGTGTCAAACATTTCAACAATCACGCAAAGGTAATATGAAAATGTCTGAATATTTAAGGATTATGAAGTGTCATGCTGACAATCTAGGGCAAGCTAGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACGAAGAATACAACCCAGTTGTGGTTGGCATTCAAGGTAAATATGAGATATCATGGGCAGATGCTCAAAACGATCTTTTTATGTTTGAAAAACGACTGGAGTTTCAGAATACTCAACGAAACAGTGTGTCCTTCAGTCACAATGCCTCAGTCAATATGGCAATAAATAGAGGAACACAATCGCAGAGGCAACAACAACAAAATTATTCTCCAAACAATTACAATCGGTCGAACAACAACAACAGTCAACGAGGAGGAACCCCAAATTCCAGAGGACGTGGTCGAGGTAGAGGATATAACTCTAACAATCGACCAATATGTCAAGTTTGTGGGAAAATAGGACATACTGCACTCGTTTGTTACAATCGTTTCAATAAGGAATATTCTCCAAGCACAAATCAGAACAGACAAAGTCAACCTAATCAACAAGGTTTTGGACCGAATACCTCCTCCTCATCATTTCAGGCTCCAAATGTTTTTGTGGCCAGTCCTAACACTCCGAGTAACCCCTTCTTGGCCACTCCAGAAACTATTGGTGACCCCTCTTGGTATGCTAATAGTGGGGCTTCACATCATGTGACAACTGACTTTGGAAACCTAGCCAATCCAATTGAATATGGAGGTATGGACTCAATCATTGTAGGTAATGGTTCACAGTCTCCTATTACCTTCACTGGCAATTCATGTTTAACTTCTGGTAAATACAATCTGCGTTTGCAAAATGTGTTATGTGCACCTAATATGGCTAAGAATTTGATTAGCATTTCGAGACTTGCTCAAGATAATGATATTTATATTGAGTTTCATGACACCTATTGTGTTGTTAAGGACAAGGGCACGGGCAAACAACTTTTGAAAGGGGATCTTAAAGAAGGTCTATACTGCCTTGCGAATACCTTAGTCAAACCAGTGGACATCTCTCAGCCAATATTGAGTAGTAATGAGTCCAAAATGTACAAAAATAATAGTGTTGCTTTTTCTGTTTGTCACAAACCCAACAAGGTGACCAAGACTTTTTGGCACAGACATCTTGGTCATCCTTCAACTAAAATTTTAGACTCTGTCATTCGTTCTTGTAATCTTCCTGTTTTGGTTAATGAAGAACACTATTTTTGTAACTCTTGTCAGTATGGTAAATCACATGCTCTACCGTTTTCGATATCAGAGTCTCGCGCATCTAAGAAATTTGAATTGGTTTATTCTGATGTATGGGGACCTGCACCTGTTTTATCTACCTCTGGTTTCCGATATTATGTGCTATTCCTTGATGATTACAGTAGATTTGTGTGGGTTTATCCCTTAAAACAAAAATCAGACACTGGTAATGCGTTTCAACACTTCTTGGCTATGGTCCAGACTCAATTCAATGGTAACATTCAGTCATTTCAGTCTGATAATGGCACAGAATTCTTGAGAGTTCATCAACTCTGTAGTCAGCTGGGAATTAAGTCACGGTATTCGTGTCCTTACACTTCTCAACAGAATGGCAGGGCTGAACGGAAGCATAGACACTTGGTTGAGACTTGCTTAACTCTGTTAGCTCAGGCTTCGATGCCTCTTGTATTTTGGTGGTGGGAGCTTCTTGGTCGCGAATCGATCGATCAATGGCCTCCCCACACCTACATTGCAAGGTCAGTCACCACGTTTTCTTCTCACAGGTAAACACTTAGACTTTGCTAATCTAAGGGTGTTTGGGTGTGCTTGCTTTCCAAATTTACGACCCTATCAGAGGCACAAGTTTGATTTTCACTCTCAGCGGTGTGTTTATCTTGGTCCCAATCCAACTCATAAAGGTTTCAGTGCAAGAACTCTGCTGGCAGGATTTTTGTTACTCACCATGTGATATTTAATGAGGTTGATTTCCCTTTTACAGATGCTACTTGGGCCACACCTTCAGCTCCTCTCACGAGTACCAGTCCTCCCTTGTCTCCTTCCCCTGCTACCTGGTTTCCCTCCTACCCTGTGCCTCTCCCCAATACCTCCTCTCAGCATACCGTCAGTATACCTGCCTCATCGACCTCACAACCCTCTCCCAACCTTCCGCATTCCTCCCCGCTACTTGCCTCTCGGTCCTCCAGCAGTCCTCTGACACCTTGCTCTGCTCCCACCTGCCCCTCTCTATCTCCTAGTCCTCATCCCTCCTTGTCTCCAAATCATCCTATCCTCTCTGTTGATTCTTCCTTTGACAGTTCTGCTCCCCCTTCATCCTCCTTCTATCCTGACATTCCTTCTTCTCCTTTACCCTTGTCAGCTCCGTCTACTATGCCCCAGCCTTCACATCCTATGGTTACTCGTGGGAAAGCTGGCATTTTTTAAGCCTAAAGCTTGGTTATCCACAAAGCCTCAGGTTGACTGGTCCCTTACCGAACCCACGCGTGTTCAGGTTGACTGGTCCCCAATGGAAGGCTGCTATGGACCAGGAATACACTGCTCTAATGCAAAATCATACCTGGGAGTTGGTCCCACCTGATCCTATATATAATATCATTGGAAACAAGTGGATCTTTCGGATCAAACGGAATGCTGATGGATCCATTCAAAGGTACAAAGCCCGCCTTGTAGCCAAGGGCTTTCATCAGAATCCTGGGGTTGACTTCTTTGAGACGTTCAGTCCGGTTGTCAAATTCTCCACCATTCGAGTTGTTCTCAACTTGGCTGTCACAAATAATTGGAGGTTGCGGCAACTCGACTTCAACAATACATTTCTTAATGGTTCTCTCACTGAGGATGTCTATATGCAACAACCACCTGGCTATGTGGATCCCGTTCATCCCTCACATATTTGCAAGCTGACCAAGGCCATTTATGGTTTGAAGCAAGCTCCGAGAGCTTGGAATTCTACCTTGAAATCTGTCTTACTTGACTGGGGATTCGTGAATTCCAAGGCTGATACATCCCTCTTCATATATAGTTCTGGTCAGTCCATTCTACTTCTTTTAGTGTATGTTGATGATGTGGTTCTCACGGGCAATGATGCTGTTTTGATGGATAATCTGGTCACCTCTCTGGATCAACGTTTTGCTCTTAAAGATTTGGGTCCGTTGAGCTATTTCTTGGGCATTCAGGTACAATATGTTGAATCTGGCATTATTTTAACTCAATCTCAGTATGCCACTGATCTTCTCCTTCGCCTTGACTGCCCTGCATTGAAACCGGCGCCCTCCCCAAGTGTTGTGGGCAAATTTCTATCTGTCAATAGTGGAACTCCTGCCTAATCCGTTCATCTATCGGAGCACTATTGGTGCGCTTGATGCCTCACGAACACACGCCGACGATCATCCTACATTGTCAACTATCTCGAGCGGTTTCTTGGTCTCCAACCGATGAACACTGACAGGCTGTGAAGCGTGTCTTGCGCTACATCTCAGGCACAAAACATTATGGTCTACTGATTCAACCCAGCTCTGATCAATCCATCCATGCCTTTTCCGATGCCGACTAGGCCTCTAATCCTGACGACAGACGTTCAGTGGTTGCTTACTGTGTTTTTATTGGTAATAGTCTCATCTCTTGGTCCTCGAAGAAGCAATCCGTCGTGGCGAGGTCAAGCACGGAGTCAGAATATCGTGCCTTGGCTCATGCTTCCACTGAGATTATATGGCTTCAACAACTTCTTGGTGAATTAGGTGTTCAATCCTCAGCTCCACCAATTATATGGTGTGACAACTTAAGTGCCAGTGCCTTGGCTGCCAATCCTGTTTTTCACGCCAGGACCAAACATATCGAAATCGACGTACACTTTGTTCGTGATCAAGTACTCCGTGGTGCACTTGAGATACGTTACGTCCCTACTTCTGATCAAGTGGCCAACTGCTTGACCAAGCCATTGTCACACTCTCAGTTCTCTATGTTTCGATCCAAACTTGGGGTCACTTCGTTACCCTCTCGTTTCCGGGGGGTATTGAGGTTAAAAGCCCACCTTGTGAGACCAGTGACTCAACATGCAGACAAAGCCAACAAAGGATTGATCCACTCTCCAAGAGCCCTGTTATTGGTGAAAGGAGCTGGCCCAAAGGAATACATCTAGAATGTTCACACCAACAAATTTGTTACGAGGATTCCTCTCTCCTCTAAGTTTTTGCCATCTGTCCCTTGTTTGTTACTCTCAGAATTATTCTTTTATTCTTTTATTCTTTGGCTCTTCTGCCCTTATATAACCAGTGTATTATCATCGAGAAATGGTGAATAGAAATTGAGGCTTCCTCAAAATTTTCTGTGTTAATTCTCAAACTATCCTCGTCACAAATCCAAGCAAGCTTCTAAGGCTGTTTACTGATTTCAAAACTGATAAAGGTACACAACATAATCTTTGTAATGCCCATTAATTTCCTTGGCTTTGTTCTCTCTTCTACAATTCTACGTTACTTTTATCACAGAGGATGAACAGTTTGAGGCTGACAAAGCTCACGTTGTTAGAGAAATTGCTGCGCTTGAATCGAAAGGTCCATGAGAAAGAGGGAGATTCTTATATGAATATCTTGTATTTTTTTTCTTCCCTTCTCTATCCAATTTGGATGTCAATTATAATAGCTAAATCAGCTCTCCAAATGATGACTTTGATCAAATGTTTTACAATATTAATAATGGGCTTTATATATATTTATATATTCGCCTTTTTCTCTGTATTCTAACGGTTTCCACGTGTGTGTATATTATTATAAGGACACTGATTGTAC

mRNA sequence

AAAAGATTTTGGTGGCATTAGGAACGGAAGACTCGAGCGATGAGATGGTAATATGAAAGAGGGAAAAAACGAGAGCCCCCAAATCAAATCCCTAGCCTTTTGCAATTCGCTAGCCCTAGGCCCCAAATCGCTATGCCGTCATTGGTAATATGTATTTTTCAGGTCTTACAAGCCCTAGCTGCAGCTTCCGCCATCTCTTCCTCTTCTTCCACCAGCAACTCCAATCTTCCTCCACCTCCTAAAGATGCATGAAGTCTTGTGTACCAACGACTACTTCCTCGATGGAAATCTCTCTCTCACTCCCACCTGTCTCCAATTCGAATTTCGATATCAAAAGTTGATCAAGTGGATGCAACGCGGTTAGATATTGAAATGTCGGCCATGCTGAAAGAACAACTGGTTAAGGTTTTTGCTTTGATGAAGATAGGCAAGCCCACACCGAGAATTTCTCTCATTAATTTGCAGTATAGAGATGAGCGTGCAATAAAAATTCCACGAAAAGATGCAAGTTTCTTTGGAAATACTTTCAAGAGACGGAAAGACTAAATATGTTCAGAGTAGTAGAGTTCAAACAATCTTGCACCATGTTTTGGTACACTGATGAAACCACGATAGACAATACTAATTTCATACAATCCTAGGAGTCGAGCAAGAGCATACAGTTAGAAGCATTTCATGTTTTTAAGACAAAGCCCACAAAGGATTGATCCACTCTCCAAGAGCCCTGTTATTGGTGAAAGGAGCTGGCCCAAAGGAATACATCTAGAATGTTCACACCAACAAATTTGTTAGGAGGATTCCTCTTTCTCCTCTAAGTTTTTGCCATCTGTCCCTTGTTTGTTACTCTCAGAATTATTCTTTTATTATTTTATTCTTTGGCTCTTCTGCCCTTATATAACCGATGTATTATTATCGAGAAATGGTGAATAGAAATTGAGGCTTCCTCACAATTTTCTCTGTGTTAATTCTCAAACTTGGTATCAAAGCTTCAATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAACAGTCCACCACTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGAAAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGCCTTGCCCTCCTATGTTTCTATCTCAAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTTTAGCTCAGAATCAACTACATCAATCAATCCTCTCTATGAAGCATGGATGACAGTTGATCAGCTACTGATCAGTTGGCTTTATAATTCAATGATTTCAGAAGTCGCAACACAGGTTATGGGGTGCAACACGGCCAAAGACCTGTGGGATGTTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGTGTCAAACATTTCAACAATCACGCAAAGGTAATATGAAAATGTCTGAATATTTAAGGATTATGAAGTGTCATGCTGACAATCTAGGGCAAGCTAGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACGAAGAATACAACCCAGTTGTGGTTGGCATTCAAGGTAAATATGAGATATCATGGGCAGATGCTCAAAACGATCTTTTTATGTTTGAAAAACGACTGGAGTTTCAGAATACTCAACGAAACAGTGTGTCCTTCAGTCACAATGCCTCAGTCAATATGGCAATAAATAGAGGAACACAATCGCAGAGGCAACAACAACAAAATTATTCTCCAAACAATTACAATCGGTCGAACAACAACAACAGTCAACGAGGAGGAACCCCAAATTCCAGAGGACGTGGTCGAGGTAGAGGATATAACTCTAACAATCGACCAATATGTCAAGTTTGTGGGAAAATAGGACATACTGCACTCGTTTGTTACAATCGTTTCAATAAGGAATATTCTCCAAGCACAAATCAGAACAGACAAAGTCAACCTAATCAACAAGGTTTTGGACCGAATACCTCCTCCTCATCATTTCAGGCTCCAAATGTTTTTGTGGCCAGTCCTAACACTCCGAGTAACCCCTTCTTGGCCACTCCAGAAACTATTGGTGACCCCTCTTGGTATGCTAATAGTGGGGCTTCACATCATGTGACAACTGACTTTGGAAACCTAGCCAATCCAATTGAATATGGAGGTATGGACTCAATCATTGTAGGTAATGGTTCACAGTCTCCTATTACCTTCACTGGCAATTCATGTTTAACTTCTGGTAAATACAATCTGCGTTTGCAAAATGTGTTATGTGCACCTAATATGGCTAAGAATTTGATTAGCATTTCGAGACTTGCTCAAGATAATGATATTTATATTGAGTTTCATGACACCTATTGTGTTGTTAAGGACAAGGGCACGGGCAAACAACTTTTGAAAGGGGATCTTAAAGAAGGTCTATACTGCCTTGCGAATACCTTAGTCAAACCAGTGGACATCTCTCAGCCAATATTGAGTAGTAATGAGTCCAAAATGTACAAAAATAATAGTGTTGCTTTTTCTGTTTGTCACAAACCCAACAAGGTGACCAAGACTTTTTGGCACAGACATCTTGGTCATCCTTCAACTAAAATTTTAGACTCTGTCATTCGTTCTTGTAATCTTCCTGTTTTGGTTAATGAAGAACACTATTTTTGTAACTCTTGTCAGTATGGTAAATCACATGCTCTACCGTTTTCGATATCAGAGTCTCGCGCATCTAAGAAATTTGAATTGGTTTATTCTGATGTATGGGGACCTGCACCTGTTTTATCTACCTCTGGTTTCCGATATTATGTGCTATTCCTTGATGATTACAGTAGATTTGTGTGGGTTTATCCCTTAAAACAAAAATCAGACACTGGTAATGCGTTTCAACACTTCTTGGCTATGGTCCAGACTCAATTCAATGGTAACATTCAGTCATTTCAGTCTGATAATGGCACAGAATTCTTGAGAGTTCATCAACTCTGTAGTCAGCTGGGAATTAAGTCACGGTATTCGTGTCCTTACACTTCTCAACAGAATGGCAGGGCTGAACGGAAGCATAGACACTTGGTTGAGACTTGCTTAACTCTGTTAGCTCAGGCTTCGATGCCTCTTGTATTTTGGTGGTGGGAGCTTCTTGGTCGCGAATCGATCGATCAATGGCCTCCCCACACCTACATTGCAAGGTCAGTCACCACGTTTTCTTCTCACAGGTAAACACTTAGACTTTGCTAATCTAAGGGTGTTTGGGTGTGCTTGCTTTCCAAATTTACGACCCTATCAGAGGCACAAGTTTGATTTTCACTCTCAGCGGTGTGTTTATCTTGGTCCCAATCCAACTCATAAAGGTTTCAGTGCAAGAACTCTGCTGGCAGGATTTTTGTTACTCACCATGTGATATTTAATGAGGTTGATTTCCCTTTTACAGATGCTACTTGGGCCACACCTTCAGCTCCTCTCACGAGTACCAGTCCTCCCTTGTCTCCTTCCCCTGCTACCTGGTTTCCCTCCTACCCTGTGCCTCTCCCCAATACCTCCTCTCAGCATACCGTCAGTATACCTGCCTCATCGACCTCACAACCCTCTCCCAACCTTCCGCATTCCTCCCCGCTACTTGCCTCTCGGTCCTCCAGCAGTCCTCTGACACCTTGCTCTGCTCCCACCTGCCCCTCTCTATCTCCTAGTCCTCATCCCTCCTTGTCTCCAAATCATCCTATCCTCTCTGTTGATTCTTCCTTTGACAGTTCTGCTCCCCCTTCATCCTCCTTCTATCCTGACATTCCTTCTTCTCCTTTACCCTTGTCAGCTCCGTCTACTATGCCCCAGCCTTCACATCCTATGGTTACTCGTGGGAAAGCTGGCATTTTTTAAGCCTAAAGCTTGGTTATCCACAAAGCCTCAGGTTGACTGGTCCCTTACCGAACCCACGCGTGTTCAGGTTGACTGGTCCCCAATGGAAGGCTGCTATGGACCAGGAATACACTGCTCTAATGCAAAATCATACCTGGGAGTTGGTCCCACCTGATCCTATATATAATATCATTGGAAACAAGTGGATCTTTCGGATCAAACGGAATGCTGATGGATCCATTCAAAGGTACAAAGCCCGCCTTGTAGCCAAGGGCTTTCATCAGAATCCTGGGGTTGACTTCTTTGAGACGTTCAGTCCGGTTGTCAAATTCTCCACCATTCGAGTTGTTCTCAACTTGGCTGTCACAAATAATTGGAGGTTGCGGCAACTCGACTTCAACAATACATTTCTTAATGGTTCTCTCACTGAGGATGTCTATATGCAACAACCACCTGGCTATGTGGATCCCGTTCATCCCTCACATATTTGCAAGCTGACCAAGGCCATTTATGGTTTGAAGCAAGCTCCGAGAGCTTGGAATTCTACCTTGAAATCTGTCTTACTTGACTGGGGATTCGTGAATTCCAAGGCTGATACATCCCTCTTCATATATAGTTCTGGTCAGTCCATTCTACTTCTTTTAGTGTATGTTGATGATGTGGTTCTCACGGGCAATGATGCTGTTTTGATGGATAATCTGGTCACCTCTCTGGATCAACGTTTTGCTCTTAAAGATTTGGGTCCGTTGAGCTATTTCTTGGGCATTCAGGTACAATATGTTGAATCTGGCATTATTTTAACTCAATCTCAGTATGCCACTGATCTTCTCCTTCGCCTTGACTGCCCTGCATTGAAACCGGCGCCCTCCCCAAGTGTTGTGGGCAAATTTCTATCTGTCAATAGTGGAACTCCTGCCTAATCCGTTCATCTATCGGAGCACTATTGGTGCGCTTGATGCCTCACGAACACACGCCGACGATCATCCTACATTGTCAACTATCTCGAGCGGTTTCTTGGTCTCCAACCGATGAACACTGACAGGCTGTGAAGCGTGTCTTGCGCTACATCTCAGGCACAAAACATTATGGTCTACTGATTCAACCCAGCTCTGATCAATCCATCCATGCCTTTTCCGATGCCGACTAGGCCTCTAATCCTGACGACAGACGTTCAGTGGTTGCTTACTGTGTTTTTATTGGTAATAGTCTCATCTCTTGGTCCTCGAAGAAGCAATCCGTCGTGGCGAGGTCAAGCACGGAGTCAGAATATCGTGCCTTGGCTCATGCTTCCACTGAGATTATATGGCTTCAACAACTTCTTGGTGAATTAGGTGTTCAATCCTCAGCTCCACCAATTATATGGTGTGACAACTTAAGTGCCAGTGCCTTGGCTGCCAATCCTGTTTTTCACGCCAGGACCAAACATATCGAAATCGACGTACACTTTGTTCGTGATCAAGTACTCCGTGGTGCACTTGAGATACGTTACGTCCCTACTTCTGATCAAGTGGCCAACTGCTTGACCAAGCCATTGTCACACTCTCAGTTCTCTATGTTTCGATCCAAACTTGGGGTCACTTCGTTACCCTCTCGTTTCCGGGGGGTATTGAGGTTAAAAGCCCACCTTGTGAGACCAGTGACTCAACATGCAGACAAAGCCAACAAAGGATTGATCCACTCTCCAAGAGCCCTGTTATTGGTGAAAGGAGCTGGCCCAAAGGAATACATCTAGAATGTTCACACCAACAAATTTGTTACGAGGATTCCTCTCTCCTCTAAGTTTTTGCCATCTGTCCCTTGTTTGTTACTCTCAGAATTATTCTTTTATTCTTTTATTCTTTGGCTCTTCTGCCCTTATATAACCAGTGTATTATCATCGAGAAATGGTGAATAGAAATTGAGGCTTCCTCAAAATTTTCTGTGTTAATTCTCAAACTATCCTCGTCACAAATCCAAGCAAGCTTCTAAGGCTGTTTACTGATTTCAAAACTGATAAAGAGGATGAACAGTTTGAGGCTGACAAAGCTCACGTTGTTAGAGAAATTGCTGCGCTTGAATCGAAAGGTCCATGAGAAAGAGGGAGATTCTTATATGAATATCTTGTATTTTTTTTCTTCCCTTCTCTATCCAATTTGGATGTCAATTATAATAGCTAAATCAGCTCTCCAAATGATGACTTTGATCAAATGTTTTACAATATTAATAATGGGCTTTATATATATTTATATATTCGCCTTTTTCTCTGTATTCTAACGGTTTCCACGTGTGTGTATATTATTATAAGGACACTGATTGTAC

Coding sequence (CDS)

ATGGCCAACGCCTTATTGAATGAATCCTCGTCGTTCTCTACTGGTGCACCCCATTTTAACAGTCCACCACTCAACCAACTCTTAAATCAGGTAACTACTATCAAATTGGAAAGAGGGAATTTCCTTCTATGGAAAAATCTAGCATTACCAATCCTTCGTAGCTACAAACTCGAGAGTCATCTCCTGGGAACCAAGCCTTGCCCTCCTATGTTTCTATCTCAAGCTAGAACCGAAGGGAATGTAACAGTCGAAGGCGCCTCCTTTAGCTCAGAATCAACTACATCAATCAATCCTCTCTATGAAGCATGGATGACAGTTGATCAGCTACTGATCAGTTGGCTTTATAATTCAATGATTTCAGAAGTCGCAACACAGGTTATGGGGTGCAACACGGCCAAAGACCTGTGGGATGTTATTCAGCTCTTATTTGGAGTTCAATCACGAGCAGAGGAAGATTACCTGTGTCAAACATTTCAACAATCACGCAAAGGTAATATGAAAATGTCTGAATATTTAAGGATTATGAAGTGTCATGCTGACAATCTAGGGCAAGCTAGAAGCCCTGTTTCCACTCGATCTTTGATATCACAGGTTTTACTTGGACTTGACGAAGAATACAACCCAGTTGTGGTTGGCATTCAAGGTAAATATGAGATATCATGGGCAGATGCTCAAAACGATCTTTTTATGTTTGAAAAACGACTGGAGTTTCAGAATACTCAACGAAACAGTGTGTCCTTCAGTCACAATGCCTCAGTCAATATGGCAATAAATAGAGGAACACAATCGCAGAGGCAACAACAACAAAATTATTCTCCAAACAATTACAATCGGTCGAACAACAACAACAGTCAACGAGGAGGAACCCCAAATTCCAGAGGACGTGGTCGAGGTAGAGGATATAACTCTAACAATCGACCAATATGTCAAGTTTGTGGGAAAATAGGACATACTGCACTCGTTTGTTACAATCGTTTCAATAAGGAATATTCTCCAAGCACAAATCAGAACAGACAAAGTCAACCTAATCAACAAGGTTTTGGACCGAATACCTCCTCCTCATCATTTCAGGCTCCAAATGTTTTTGTGGCCAGTCCTAACACTCCGAGTAACCCCTTCTTGGCCACTCCAGAAACTATTGGTGACCCCTCTTGGTATGCTAATAGTGGGGCTTCACATCATGTGACAACTGACTTTGGAAACCTAGCCAATCCAATTGAATATGGAGGTATGGACTCAATCATTGTAGGTAATGGTTCACAGTCTCCTATTACCTTCACTGGCAATTCATGTTTAACTTCTGGTAAATACAATCTGCGTTTGCAAAATGTGTTATGTGCACCTAATATGGCTAAGAATTTGATTAGCATTTCGAGACTTGCTCAAGATAATGATATTTATATTGAGTTTCATGACACCTATTGTGTTGTTAAGGACAAGGGCACGGGCAAACAACTTTTGAAAGGGGATCTTAAAGAAGGTCTATACTGCCTTGCGAATACCTTAGTCAAACCAGTGGACATCTCTCAGCCAATATTGAGTAGTAATGAGTCCAAAATGTACAAAAATAATAGTGTTGCTTTTTCTGTTTGTCACAAACCCAACAAGGTGACCAAGACTTTTTGGCACAGACATCTTGGTCATCCTTCAACTAAAATTTTAGACTCTGTCATTCGTTCTTGTAATCTTCCTGTTTTGGTTAATGAAGAACACTATTTTTGTAACTCTTGTCAGTATGGTAAATCACATGCTCTACCGTTTTCGATATCAGAGTCTCGCGCATCTAAGAAATTTGAATTGGTTTATTCTGATGTATGGGGACCTGCACCTGTTTTATCTACCTCTGGTTTCCGATATTATGTGCTATTCCTTGATGATTACAGTAGATTTGTGTGGGTTTATCCCTTAAAACAAAAATCAGACACTGGTAATGCGTTTCAACACTTCTTGGCTATGGTCCAGACTCAATTCAATGGTAACATTCAGTCATTTCAGTCTGATAATGGCACAGAATTCTTGAGAGTTCATCAACTCTGTAGTCAGCTGGGAATTAAGTCACGGTATTCGTGTCCTTACACTTCTCAACAGAATGGCAGGGCTGAACGGAAGCATAGACACTTGGTTGAGACTTGCTTAACTCTGTTAGCTCAGGCTTCGATGCCTCTTGTATTTTGGTGGTGGGAGCTTCTTGGTCGCGAATCGATCGATCAATGGCCTCCCCACACCTACATTGCAAGGTCAGTCACCACGTTTTCTTCTCACAGGTAA

Protein sequence

MANALLNESSSFSTGAPHFNSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGASFSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQSRAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYNPVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFNKEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYANSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVDISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLVNEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSRYSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWWWELLGRESIDQWPPHTYIARSVTTFSSHR

Homology

[Close]

BLAST of Tan0005870 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.4e-85
Identity = 233/716 (32.54%), Postives = 345/716 (48.18%), Query Frame = 0


Query: 20  NSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEG 79
           N+  LN  ++ VT  KL   N+L+W      +   Y+L   L G+   PP          
Sbjct: 12  NTSILNVNMSNVT--KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMPP---------- 71

Query: 80  NVTVEGASFSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVI 139
                 A+  +++   +NP Y  W   D+L+ S +  ++   V   V    TA  +W+ +
Sbjct: 72  ------ATIGTDAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETL 131

Query: 140 QLLFGVQSRAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVL 199
           + ++   S      L    +Q  KG   + +Y++ +    D L     P+     + +VL
Sbjct: 132 RKIYANPSYGHVTQLRTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVL 191

Query: 200 LGLDEEYNPVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSH--NASVNMAI 259
             L EEY PV+  I  K      D    L    +RL    ++  +VS +     + N   
Sbjct: 192 ENLPEEYKPVIDQIAAK------DTPPTLTEIHERLLNHESKILAVSSATVIPITANAVS 251

Query: 260 NRGTQSQRQQQQNYSPNNY-NRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPI---CQVCG 319
           +R T +          N Y NR+NNNNS+    P  +        N+ ++P    CQ+CG
Sbjct: 252 HRNTTTTNNNNNGNRNNRYDNRNNNNNSK----PWQQSSTNFHPNNNQSKPYLGKCQICG 311

Query: 320 KIGHTALVCYNRFNKEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNP- 379
             GH+A  C          S  Q+  S  N Q           Q P     SP TP  P 
Sbjct: 312 VQGHSAKRC----------SQLQHFLSSVNSQ-----------QPP-----SPFTPWQPR 371

Query: 380 -FLATPETIGDPSWYANSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSC 439
             LA        +W  +SGA+HH+T+DF NL+    Y G D ++V +GS  PI+ TG++ 
Sbjct: 372 ANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTS 431

Query: 440 LTSGKYNLRLQNVLCAPNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDL 499
           L++    L L N+L  PN+ KNLIS+ RL   N + +EF      VKD  TG  LL+G  
Sbjct: 432 LSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKT 491

Query: 500 KEGLYCLANTLVKPVDISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPST 559
           K+ LY              PI SS    ++ + S         +K T + WH  LGHP+ 
Sbjct: 492 KDELY------------EWPIASSQPVSLFASPS---------SKATHSSWHARLGHPAP 551

Query: 560 KILDSVIRSCNLPVLVNEEHYF--CNSCQYGKSHALPFSISESRASKKFELVYSDVWGPA 619
            IL+SVI + +L VL N  H F  C+ C   KS+ +PFS S   +++  E +YSDVW  +
Sbjct: 552 SILNSVISNYSLSVL-NPSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWS-S 611

Query: 620 PVLSTSGFRYYVLFLDDYSRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNG 679
           P+LS   +RYYV+F+D ++R+ W+YPLKQKS     F  F  +++ +F   I +F SDNG
Sbjct: 612 PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNG 650

Query: 680 TEFLRVHQLCSQLGIKSRYSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFW 726
            EF+ + +  SQ GI    S P+T + NG +ERKHRH+VET LTLL+ AS+P  +W
Sbjct: 672 GEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYW 650

[Close]

BLAST of Tan0005870 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-83
Identity = 227/705 (32.20%), Postives = 333/705 (47.23%), Query Frame = 0


Query: 28  LNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGAS 87
           +N     KL   N+L+W      +   Y+L   L G+ P PP                A+
Sbjct: 18  VNMSNVTKLTSTNYLMWSRQVHALFDGYELAGFLDGSTPMPP----------------AT 77

Query: 88  FSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQS 147
             +++   +NP Y  W   D+L+ S +  ++   V   V    TA  +W+ ++ ++    
Sbjct: 78  IGTDAVPRVNPDYTRWRRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIY---- 137

Query: 148 RAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYN 207
            A   Y          G++    ++       D L     P+     + +VL  L ++Y 
Sbjct: 138 -ANPSY----------GHVTQLRFI----TRFDQLALLGKPMDHDEQVERVLENLPDDYK 197

Query: 208 PVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASV--NMAINRGTQSQR 267
           PV+  I  K      D    L    +RL  + ++  +++ +    +  N+  +R T + R
Sbjct: 198 PVIDQIAAK------DTPPSLTEIHERLINRESKLLALNSAEVVPITANVVTHRNTNTNR 257

Query: 268 QQQQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPI---CQVCGKIGHTALVC 327
            Q       NYN  NNNN      P+S G    R  N   +P    CQ+C   GH+A  C
Sbjct: 258 NQNNRGDNRNYN--NNNNRSNSWQPSSSG---SRSDNRQPKPYLGRCQICSVQGHSAKRC 317

Query: 328 YNRFNKEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGD 387
                    P  +Q + +   QQ   P T        N+ V SP   +N           
Sbjct: 318 ---------PQLHQFQSTTNQQQSTSPFTPWQ--PRANLAVNSPYNANN----------- 377

Query: 388 PSWYANSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQ 447
             W  +SGA+HH+T+DF NL+    Y G D +++ +GS  PIT TG++ L +   +L L 
Sbjct: 378 --WLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLN 437

Query: 448 NVLCAPNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTL 507
            VL  PN+ KNLIS+ RL   N + +EF      VKD  TG  LL+G  K+ LY      
Sbjct: 438 KVLYVPNIHKNLISVYRLCNTNRVSVEFFPASFQVKDLNTGVPLLQGKTKDELY------ 497

Query: 508 VKPVDISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCN 567
                   PI SS    M+       S C   +K T + WH  LGHPS  IL+SVI + +
Sbjct: 498 ------EWPIASSQAVSMFA------SPC---SKATHSSWHSRLGHPSLAILNSVISNHS 557

Query: 568 LPVLVNEEHYF--CNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYY 627
           LPVL N  H    C+ C   KSH +PFS S   +SK  E +YSDVW  +P+LS   +RYY
Sbjct: 558 LPVL-NPSHKLLSCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYY 617

Query: 628 VLFLDDYSRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCS 687
           V+F+D ++R+ W+YPLKQKS   + F  F ++V+ +F   I +  SDNG EF+ +    S
Sbjct: 618 VIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLRDYLS 629

Query: 688 QLGIKSRYSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFW 726
           Q GI    S P+T + NG +ERKHRH+VE  LTLL+ AS+P  +W
Sbjct: 678 QHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYW 629

[Close]

BLAST of Tan0005870 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.8e-33
Identity = 128/459 (27.89%), Postives = 197/459 (42.92%), Query Frame = 0


Query: 275 NYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFNKEYSPST 334
           +Y RS+NN  + G    S+ R + R  N      C  C + GH    C N    +   S 
Sbjct: 204 SYQRSSNNYGRSGARGKSKNRSKSRVRN------CYNCNQPGHFKRDCPNPRKGKGETSG 263

Query: 335 NQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYANSGASHH 394
            +N            NT++      NV +          L+ PE+     W  ++ ASHH
Sbjct: 264 QKN----------DDNTAAMVQNNDNVVLFINEEEECMHLSGPES----EWVVDTAASHH 323

Query: 395 VTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCL-TSGKYNLRLQNVLCAPNMAKN 454
             T   +L      G   ++ +GN S S I   G+ C+ T+    L L++V   P++  N
Sbjct: 324 -ATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMN 383

Query: 455 LISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVDISQPIL 514
           L  IS +A D D Y  +                 K  L +G   +A  + +         
Sbjct: 384 L--ISGIALDRDGYESYFANQ-------------KWRLTKGSLVIAKGVAR--------- 443

Query: 515 SSNESKMYKNNSVAFSVCH-----KPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLVN 574
                 +Y+ N+    +C        ++++   WH+ +GH S K L  + +   +     
Sbjct: 444 ----GTLYRTNA---EICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKG 503

Query: 575 EEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYS 634
                C+ C +GK H + F  S  R     +LVYSDV GP  + S  G +Y+V F+DD S
Sbjct: 504 TTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDAS 563

Query: 635 RFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFL--RVHQLCSQLGIKS 694
           R +WVY LK K      FQ F A+V+ +    ++  +SDNG E+      + CS  GI+ 
Sbjct: 564 RKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRH 610

Query: 695 RYSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFW 726
             + P T Q NG AER +R +VE   ++L  A +P  FW
Sbjct: 624 EKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFW 610

[Close]

BLAST of Tan0005870 vs. ExPASy Swiss-Prot
Match: Q03494 (Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-DR2 PE=3 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-22
Identity = 89/330 (26.97%), Postives = 146/330 (44.24%), Query Frame = 0


Query: 413 SIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAKNLISISRLAQDNDIYIEFHD 472
           +I+       PI   GN               L  PN+A +L+S+S LA  N       +
Sbjct: 481 NIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN 540

Query: 473 TYCVVKDKGTGKQLLKGDLKEG-LYCLANTLVKPVDISQPILSSNESKMYKNNSVAFSVC 532
           T  + +  GT   +L   +K G  Y L+   + P  IS+  +++    + K+ SV     
Sbjct: 541 T--LERSDGT---VLAPIVKHGDFYWLSKKYLIPSHISKLTINN----VNKSKSV----- 600

Query: 533 HKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVL-------VNEEHYFCNSCQYGKS-- 592
              NK      HR LGH + + +   ++   +  L        N   Y C  C  GKS  
Sbjct: 601 ---NKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTK 660

Query: 593 --HALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVWVYPLKQKS 652
             H     +    + + F+ +++D++GP   L  S   Y++ F D+ +RF WVYPL  + 
Sbjct: 661 HRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRR 720

Query: 653 DTG--NAFQHFLAMVQTQFNGNIQSFQSDNGTEFLR--VHQLCSQLGIKSRYSCPYTSQQ 712
           +    N F   LA ++ QFN  +   Q D G+E+    +H+  +  GI + Y+    S+ 
Sbjct: 721 EESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRA 780

Query: 713 NGRAERKHRHLVETCLTLLAQASMPLVFWW 727
           +G AER +R L+  C TLL  + +P   W+
Sbjct: 781 HGVAERLNRTLLNDCRTLLHCSGLPNHLWF 793

[Close]

BLAST of Tan0005870 vs. ExPASy Swiss-Prot
Match: Q12337 (Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-GR1 PE=5 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-22
Identity = 89/330 (26.97%), Postives = 146/330 (44.24%), Query Frame = 0


Query: 413 SIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAKNLISISRLAQDNDIYIEFHD 472
           +I+       PI   GN               L  PN+A +L+S+S LA  N       +
Sbjct: 481 NIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLSELANQNITACFTRN 540

Query: 473 TYCVVKDKGTGKQLLKGDLKEG-LYCLANTLVKPVDISQPILSSNESKMYKNNSVAFSVC 532
           T  + +  GT   +L   +K G  Y L+   + P  IS+  +++    + K+ SV     
Sbjct: 541 T--LERSDGT---VLAPIVKHGDFYWLSKKYLIPSHISKLTINN----VNKSKSV----- 600

Query: 533 HKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVL-------VNEEHYFCNSCQYGKS-- 592
              NK      HR LGH + + +   ++   +  L        N   Y C  C  GKS  
Sbjct: 601 ---NKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKSTK 660

Query: 593 --HALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVWVYPLKQKS 652
             H     +    + + F+ +++D++GP   L  S   Y++ F D+ +RF WVYPL  + 
Sbjct: 661 HRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRR 720

Query: 653 DTG--NAFQHFLAMVQTQFNGNIQSFQSDNGTEFLR--VHQLCSQLGIKSRYSCPYTSQQ 712
           +    N F   LA ++ QFN  +   Q D G+E+    +H+  +  GI + Y+    S+ 
Sbjct: 721 EESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRA 780

Query: 713 NGRAERKHRHLVETCLTLLAQASMPLVFWW 727
           +G AER +R L+  C TLL  + +P   W+
Sbjct: 781 HGVAERLNRTLLNDCRTLLHCSGLPNHLWF 793

[Close]

BLAST of Tan0005870 vs. NCBI nr
Match: PNX76291.1 (gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense])

HSP 1 Score: 517.7 bits (1332), Expect = 1.7e-142
Identity = 303/707 (42.86%), Postives = 410/707 (57.99%), Query Frame = 0


Query: 20  NSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEG 79
           NS   N L + V ++KL+R N+ LW+++ LPI+R  +L+ ++LG K CP  F++ A    
Sbjct: 6   NSNHKNDLPSTV-SVKLDRDNYPLWQSMVLPIIRGARLDGYMLGKKKCPEEFITAA---- 65

Query: 80  NVTVEGASFSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVI 139
                      +S+   NP +E W   DQ L+ WL NSM   +ATQ++ C T+  LWD  
Sbjct: 66  -----------DSSKKFNPEFEDWQAYDQQLLGWLRNSMTVGIATQLLHCETSMQLWDEA 125

Query: 140 QLLFGVQSRAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVL 199
           Q L G  +R++  YL   F  +RKG MKM +YL  MK  AD L  A +P+ST  LI Q L
Sbjct: 126 QSLAGAHTRSQITYLKSEFHSTRKGEMKMEDYLIKMKNLADKLKLAGNPISTSDLIIQTL 185

Query: 200 LGLDEEYNPVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINR 259
            GLD EYNPVVV +  +  +SW D Q  L  FE R+E    Q NS++   N ++N   N 
Sbjct: 186 NGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFENRIE----QLNSLT---NLTLNATANV 245

Query: 260 GTQSQRQQQQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTA 319
             +S  +  +  S NN+  SNNN   RG   N RG   GRG   + +  CQVCG   H A
Sbjct: 246 AKKSDHRGNRFNSNNNWRGSNNN--WRGS--NFRGWRGGRGRGRSFKTTCQVCGLDNHIA 305

Query: 320 LVCYNRFNKEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPET 379
           + C+ RF+K YS S   N  +  ++QG                        N FLA+  +
Sbjct: 306 IDCFYRFDKTYSRS---NHSANNDKQG----------------------SHNAFLASQNS 365

Query: 380 IGDPSWYANSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNL 439
           I D  WY +SGAS+HVT       N  E+ G +S+IVGNG +  I  TG+S L S    L
Sbjct: 366 IEDYDWYFDSGASNHVTHQTDKFQNLSEHHGKNSLIVGNGEKLEIVATGSSKLKS----L 425

Query: 440 RLQNVLCAPNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLA 499
            L ++L  P + KNL+S+S+LA DN+I +EF +  C VKDK TGK +L+G LK+GLY L+
Sbjct: 426 NLHDILYVPKITKNLLSVSKLAADNNILVEFDENCCFVKDKLTGKAILRGILKDGLYQLS 485

Query: 500 NTLVKPVDISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIR 559
                                 K++S   S+        K  WHR LGHP+ K+LD V++
Sbjct: 486 E---------------------KDSSAYVSI--------KESWHRKLGHPNNKVLDIVLK 545

Query: 560 SCNLPVLVNEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRY 619
           SCN+ +  +++  FC +CQYGK H LPF  S S A +  ELV++DVWGPAP++S+SGF+Y
Sbjct: 546 SCNVKLSPSDQFSFCEACQYGKMHFLPFKTSFSHAKEILELVHTDVWGPAPIISSSGFKY 605

Query: 620 YVLFLDDYSRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLC 679
           YV F+DD++RF W+YPLKQKSDT +AF  F  MV+ QF+  I++ Q D G E+  V +  
Sbjct: 606 YVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFSKKIKTIQCDGGGEYKPVQKHA 627

Query: 680 SQLGIKSRYSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
            + GI+ R SCPYTSQQNGRAERKHRH+ E  LTLLAQA MPL +WW
Sbjct: 666 IEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWW 627

[Close]

BLAST of Tan0005870 vs. NCBI nr
Match: GAU19483.1 (hypothetical protein TSUD_77270 [Trifolium subterraneum])

HSP 1 Score: 516.5 bits (1329), Expect = 3.8e-142
Identity = 298/694 (42.94%), Postives = 398/694 (57.35%), Query Frame = 0


Query: 33  TIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGASFSSES 92
           ++KL+R N+ LWK+L LP++R  KL+ ++LGT+ CP  F++               SS+S
Sbjct: 18  SVKLDRNNYPLWKSLVLPVIRGCKLDGYMLGTEGCPEEFIT---------------SSDS 77

Query: 93  TTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQSRAEED 152
           + + N  +  W   DQ L+ W+ NSM +E+ATQ++ C T+K LWD  Q L G  +R++  
Sbjct: 78  SKNKNSAFVEWQANDQRLLGWMLNSMTTEIATQLLHCETSKQLWDEAQSLAGAHTRSQII 137

Query: 153 YLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYNPVVVG 212
           YL   F   RKG MKM +YL  MK   D L  A +PVST  LI Q L GLD EYNPVVV 
Sbjct: 138 YLKSEFHSIRKGEMKMEDYLIKMKNLVDKLKLAGNPVSTSDLIIQTLNGLDSEYNPVVVK 197

Query: 213 IQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYS 272
           +  +  +SW D Q  L  FE R+E  N   N  + + NA+ N+A        R   +  S
Sbjct: 198 LSDQTTLSWVDLQAQLLTFESRIEQLN---NLTNLTLNATANVA-------NRSDHRGKS 257

Query: 273 PNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFNKEYSP 332
            NN  R +N+   RG        GRGRG +  N   CQVCG   H A+ C++RF+K YS 
Sbjct: 258 SNNNWRGSNSRGWRG--------GRGRGKSGKNP--CQVCGLSNHIAIDCFHRFDKTYSR 317

Query: 333 STNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYANSGAS 392
           S   N  +  ++QG                        N FLA+  ++ D  WY +SGAS
Sbjct: 318 S---NHSAGHDKQG----------------------SHNAFLASQNSVEDYDWYFDSGAS 377

Query: 393 HHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAK 452
           +HVT       +  E+ G +S++VGNG +  I  TG+S L S    L L ++L  PN+ K
Sbjct: 378 NHVTHQTEKFQDLTEHHGKNSLVVGNGEKLAILATGSSKLKS----LNLHDILYVPNITK 437

Query: 453 NLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVDISQPI 512
           NL+S+S+LA DN+I +EF +  C VKDK TGK +LKG LK+GLY L+ T           
Sbjct: 438 NLLSVSKLAADNNILVEFDENCCFVKDKLTGKVILKGLLKDGLYQLSGT----------- 497

Query: 513 LSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLVNEEHY 572
                    K N  AF          K  WHR LGHP+ K+LD V+ SC + V  ++   
Sbjct: 498 ---------KRNPSAF-------VSVKESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFS 557

Query: 573 FCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVW 632
           FC +CQYGK H LPF  S S A +  ELV++DVWGPAP++++SGF+YYV F+DD+SRF W
Sbjct: 558 FCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTW 617

Query: 633 VYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSRYSCPY 692
           +YPLKQKS+T  AF  F  + + QFN  I+  Q D G E+  V +L  + GI+ R SCPY
Sbjct: 618 IYPLKQKSETVQAFIQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPY 620

Query: 693 TSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
           TSQQNGRAERKHRH+ E  LTLLAQA MPL +WW
Sbjct: 678 TSQQNGRAERKHRHITEFGLTLLAQAQMPLHYWW 620

[Close]

BLAST of Tan0005870 vs. NCBI nr
Match: PNX94503.1 (putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense])

HSP 1 Score: 503.8 bits (1296), Expect = 2.5e-138
Identity = 290/699 (41.49%), Postives = 394/699 (56.37%), Query Frame = 0


Query: 28  LNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGAS 87
           L    ++KL+R NF LWK+L LP++R  K + ++LGTK CP  F++              
Sbjct: 12  LPSTVSVKLDRDNFPLWKSLVLPLIRGCKYDGYMLGTKKCPDQFVT-------------- 71

Query: 88  FSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQS 147
            S ++T  INP Y+ W   DQ L+ WL NSM  ++ATQV+ C T+K LWD  Q L G  +
Sbjct: 72  -SIDNTEKINPDYQDWQADDQALLGWLMNSMTVDIATQVLHCETSKQLWDEAQSLAGAHT 131

Query: 148 RAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYN 207
           R+   YL   F  + K  MKM +YL  MK  AD L  A SP+S+  L+ Q L GLD EYN
Sbjct: 132 RSRIIYLKSEFHNTHKREMKMEQYLAKMKNLADKLKLAGSPISSSDLMIQTLNGLDSEYN 191

Query: 208 PVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQ 267
           PVVV +  +  ISW D Q  L  FE RL+  N   N    + NAS N A    +   +  
Sbjct: 192 PVVVKLSDQTNISWVDFQAQLLAFESRLDQLNNFNN---INLNASANFASKNESGGNK-- 251

Query: 268 QQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFN 327
              +      R +N+   RG      GRGR R  +   RPICQ+CGK GHTA  CY RF+
Sbjct: 252 ---FGSRGGWRGSNSRGMRG------GRGRAR-MSKPPRPICQICGKFGHTAAQCYYRFD 311

Query: 328 KEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYA 387
           K Y         ++ N    G  + S+                  F+A+P    D  WY 
Sbjct: 312 KSY---------TEKNHYAEGEGSHSA------------------FVASPYHGQDYEWYF 371

Query: 388 NSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCA 447
           +SGAS+HVT   G L +  E  G +S++VGNG +  I  +G++ L     ++ L+NVL  
Sbjct: 372 DSGASNHVTHQSGQLQDLNENNGKNSLLVGNGEKLKILASGSTKLN----DVNLRNVLYV 431

Query: 448 PNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVD 507
           P + KNL+S+S+L  DN+  +EF + YC VKDK TGK LLKG LK+GLY L+        
Sbjct: 432 PEITKNLLSVSKLTIDNNALVEFDENYCYVKDKLTGKALLKGRLKDGLYQLS-------- 491

Query: 508 ISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLV 567
                 ++ E    K+     S+        K  WHR LGHP+ K+L+ V++  N+ +  
Sbjct: 492 ------ANKEPPTNKDPCAYISL--------KEIWHRKLGHPNNKVLEKVLKDNNVKISP 551

Query: 568 NEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDY 627
           +++  FC +CQ+GK H LPF  S S A +  +L+++DVWGPAP+LS S F+YYV FLDD+
Sbjct: 552 SDKFTFCEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDF 611

Query: 628 SRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSR 687
           SRF W++PLKQKS+T +AF  F  +V+ QFN  I+  + D G E+  V +     GI+ +
Sbjct: 612 SRFTWIFPLKQKSETIHAFNQFKNLVENQFNKKIKVIRCDGGGEYKPVQKCAIDSGIQFQ 627

Query: 688 YSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
            SCPYTSQQNGRAERKHRH+ E  LTLLAQA MPL +WW
Sbjct: 672 MSCPYTSQQNGRAERKHRHVTELGLTLLAQAKMPLSYWW 627

[Close]

BLAST of Tan0005870 vs. NCBI nr
Match: PNY01489.1 (copia-like polyprotein, partial [Trifolium pratense])

HSP 1 Score: 498.0 bits (1281), Expect = 1.4e-136
Identity = 292/699 (41.77%), Postives = 405/699 (57.94%), Query Frame = 0


Query: 28  LNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGAS 87
           L  + ++KL+R N+ LWK+L LP++R  K + ++LGTK CP  F++              
Sbjct: 13  LPSIISVKLDRDNYPLWKSLVLPLIRGCKFDGYILGTKECPEQFVT-------------- 72

Query: 88  FSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQS 147
            S++ +  +NP ++ WM  DQ L+ WL NSM  ++ATQ++ C T+K LWD  Q L G  +
Sbjct: 73  -SADKSKKVNPDFQDWMADDQALLGWLMNSMAIDIATQLLHCETSKQLWDEAQSLAGAHT 132

Query: 148 RAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYN 207
           ++   YL   F  +RKG MKM EYL  MK  +D L  + SP+S   L+ Q L GLD EYN
Sbjct: 133 KSRIIYLKSEFHNTRKGEMKMEEYLIKMKNLSDKLKLSGSPISNSDLMIQTLNGLDAEYN 192

Query: 208 PVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQ 267
           PVVV +  +  +SW D Q  L  FE RL+  N   N    + NAS N A     +++ + 
Sbjct: 193 PVVVKLSDQINLSWVDVQAQLLAFESRLDQLN---NFSGLTLNASANFA----NKTEFRG 252

Query: 268 QQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFN 327
            + +S  N+ RS N    RG        GRG+G  SN +  CQVC   GHTA+ C  RF+
Sbjct: 253 NKFHSRGNWRRS-NFRGMRG--------GRGKGRMSNTK--CQVCSGTGHTAVDCSYRFD 312

Query: 328 KEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYA 387
           + Y   T +N  ++ ++QG           + + FVASP               D  WY 
Sbjct: 313 RSY---TGRNYSTEADKQG-----------SHSAFVASPYHGQ-----------DYEWYF 372

Query: 388 NSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCA 447
           +SGAS+HVT          E+ G +S++VGNG +  I  +G++ L +    L L +VL  
Sbjct: 373 DSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKLNT----LNLHDVLYV 432

Query: 448 PNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVD 507
           P + KNL+S+S+L  DN+I++EF    C VKDK TG+ LLKG LK+GLY L+       D
Sbjct: 433 PQITKNLLSVSKLTADNNIFVEFDANCCSVKDKLTGQTLLKGRLKDGLYQLS-------D 492

Query: 508 ISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLV 567
           +S     SN     K+  V  SV        K  WHR LGHP+ K+L+ V++ CN+ +  
Sbjct: 493 VSP---QSN-----KDPCVYMSV--------KESWHRKLGHPNNKVLEKVLKDCNVKISP 552

Query: 568 NEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDY 627
           +++  FC +CQ+GK H LPF  S S   +   L++SDVWGPAP+LS SGF+YYV F+DD+
Sbjct: 553 SDQFSFCEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDF 612

Query: 628 SRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSR 687
           SRF W++PLKQKSDT +AF  F  + + QFN  I+  Q D G E+  V ++  + GI+ R
Sbjct: 613 SRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEYKAVQKVSIEAGIQFR 626

Query: 688 YSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
            SCPYTSQQNGRAERKHRH+VE  LTLLAQA MPL +WW
Sbjct: 673 MSCPYTSQQNGRAERKHRHVVELGLTLLAQAKMPLRYWW 626

[Close]

BLAST of Tan0005870 vs. NCBI nr
Match: PNX78574.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense])

HSP 1 Score: 498.0 bits (1281), Expect = 1.4e-136
Identity = 290/694 (41.79%), Postives = 388/694 (55.91%), Query Frame = 0


Query: 33  TIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGASFSSES 92
           ++ L+R NF LWK+L LPI+R  +L+ ++LGTK CP  F++ A   G             
Sbjct: 18  SVMLDRENFPLWKSLVLPIIRGCRLDGYILGTKECPEQFITSAEASGK------------ 77

Query: 93  TTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQSRAEED 152
              INP +  W   DQ ++ WL N+M +  A+Q++ C T+K LW+  Q L    +R+   
Sbjct: 78  --KINPDFGDWQAEDQRVLGWLLNTMTTGTASQLLHCETSKQLWEEAQSLASAHTRSRVI 137

Query: 153 YLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYNPVVVG 212
           YL   F  +RKG  KM +YL  MK  AD L  A SP++   LI Q L GLD +YNP+VV 
Sbjct: 138 YLRSEFHNTRKGEKKMEDYLMKMKDLADKLKMAGSPITNVDLIIQTLNGLDSDYNPIVVK 197

Query: 213 IQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYS 272
           +  +  +SW D Q  L  FE RL+  N+  N    + NA+ N+A             N +
Sbjct: 198 LSDQINLSWVDLQAQLLAFESRLDQLNSFNN---LNRNATTNVA-------------NKA 257

Query: 273 PNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFNKEYSP 332
               N  N+  S RG +  +   GRG+G  SN+  ICQVC K GHTA+ C +R++K Y+ 
Sbjct: 258 QFRGNIYNHRGSWRGSSFRNTRGGRGKGRPSND--ICQVCNKHGHTAIECDHRYDKSYTG 317

Query: 333 STNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYANSGAS 392
           S+  N   +  +                          N FLA+     D  WY +SGAS
Sbjct: 318 SSYSNANVERQR------------------------THNAFLASRYNSQDYEWYFDSGAS 377

Query: 393 HHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAK 452
           +HVT          E  G +S+IVGNG++  I  +G+S L     NL L +VL  P + K
Sbjct: 378 NHVTHQADKFQELTENSGKNSLIVGNGAKLKIDASGSSKLK----NLNLHDVLYVPQITK 437

Query: 453 NLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVDISQPI 512
           NL+S+S+L  DN+I +EF +  C VKDK TGK LL+G LK+GLY L+N            
Sbjct: 438 NLLSVSKLTSDNNIIVEFDNDCCFVKDKLTGKVLLRGILKDGLYQLSN------------ 497

Query: 513 LSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLVNEEHY 572
                S+  K+  V  SV        K  WHR LGHPS  +LD V++ CN+    +++  
Sbjct: 498 ---GSSQTNKDPCVYLSV--------KESWHRKLGHPSNNVLDKVLKICNVKTSPSDKFK 557

Query: 573 FCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVW 632
           FC +CQ GKSH LPF  S S A +  EL+++DVWGPAP+ S SGF+YYV F+DD SRF W
Sbjct: 558 FCEACQLGKSHLLPFKSSSSHAQEVLELIHTDVWGPAPINSISGFKYYVHFIDDSSRFTW 617

Query: 633 VYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSRYSCPY 692
           +YPLKQKSDT +AF  F  MV+ QFN  I+  Q D G EF  V ++  + GIK R SCPY
Sbjct: 618 IYPLKQKSDTIHAFMQFKNMVENQFNKRIKIIQCDGGGEFKPVQKVALETGIKFRMSCPY 628

Query: 693 TSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
           TSQQNGRAERKHRH+ E  LTLLAQA+M L +WW
Sbjct: 678 TSQQNGRAERKHRHVAELGLTLLAQANMSLHYWW 628

[Close]

BLAST of Tan0005870 vs. ExPASy TrEMBL
Match: A0A2K3LCM1 (Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g032236 PE=4 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 8.2e-143
Identity = 303/707 (42.86%), Postives = 410/707 (57.99%), Query Frame = 0


Query: 20  NSPPLNQLLNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEG 79
           NS   N L + V ++KL+R N+ LW+++ LPI+R  +L+ ++LG K CP  F++ A    
Sbjct: 6   NSNHKNDLPSTV-SVKLDRDNYPLWQSMVLPIIRGARLDGYMLGKKKCPEEFITAA---- 65

Query: 80  NVTVEGASFSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVI 139
                      +S+   NP +E W   DQ L+ WL NSM   +ATQ++ C T+  LWD  
Sbjct: 66  -----------DSSKKFNPEFEDWQAYDQQLLGWLRNSMTVGIATQLLHCETSMQLWDEA 125

Query: 140 QLLFGVQSRAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVL 199
           Q L G  +R++  YL   F  +RKG MKM +YL  MK  AD L  A +P+ST  LI Q L
Sbjct: 126 QSLAGAHTRSQITYLKSEFHSTRKGEMKMEDYLIKMKNLADKLKLAGNPISTSDLIIQTL 185

Query: 200 LGLDEEYNPVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINR 259
            GLD EYNPVVV +  +  +SW D Q  L  FE R+E    Q NS++   N ++N   N 
Sbjct: 186 NGLDSEYNPVVVKLSDQTTLSWVDLQAQLLTFENRIE----QLNSLT---NLTLNATANV 245

Query: 260 GTQSQRQQQQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTA 319
             +S  +  +  S NN+  SNNN   RG   N RG   GRG   + +  CQVCG   H A
Sbjct: 246 AKKSDHRGNRFNSNNNWRGSNNN--WRGS--NFRGWRGGRGRGRSFKTTCQVCGLDNHIA 305

Query: 320 LVCYNRFNKEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPET 379
           + C+ RF+K YS S   N  +  ++QG                        N FLA+  +
Sbjct: 306 IDCFYRFDKTYSRS---NHSANNDKQG----------------------SHNAFLASQNS 365

Query: 380 IGDPSWYANSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNL 439
           I D  WY +SGAS+HVT       N  E+ G +S+IVGNG +  I  TG+S L S    L
Sbjct: 366 IEDYDWYFDSGASNHVTHQTDKFQNLSEHHGKNSLIVGNGEKLEIVATGSSKLKS----L 425

Query: 440 RLQNVLCAPNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLA 499
            L ++L  P + KNL+S+S+LA DN+I +EF +  C VKDK TGK +L+G LK+GLY L+
Sbjct: 426 NLHDILYVPKITKNLLSVSKLAADNNILVEFDENCCFVKDKLTGKAILRGILKDGLYQLS 485

Query: 500 NTLVKPVDISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIR 559
                                 K++S   S+        K  WHR LGHP+ K+LD V++
Sbjct: 486 E---------------------KDSSAYVSI--------KESWHRKLGHPNNKVLDIVLK 545

Query: 560 SCNLPVLVNEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRY 619
           SCN+ +  +++  FC +CQYGK H LPF  S S A +  ELV++DVWGPAP++S+SGF+Y
Sbjct: 546 SCNVKLSPSDQFSFCEACQYGKMHFLPFKTSFSHAKEILELVHTDVWGPAPIISSSGFKY 605

Query: 620 YVLFLDDYSRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLC 679
           YV F+DD++RF W+YPLKQKSDT +AF  F  MV+ QF+  I++ Q D G E+  V +  
Sbjct: 606 YVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNMVENQFSKKIKTIQCDGGGEYKPVQKHA 627

Query: 680 SQLGIKSRYSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
            + GI+ R SCPYTSQQNGRAERKHRH+ E  LTLLAQA MPL +WW
Sbjct: 666 IEAGIQFRMSCPYTSQQNGRAERKHRHIAEFGLTLLAQAKMPLNYWW 627

[Close]

BLAST of Tan0005870 vs. ExPASy TrEMBL
Match: A0A2Z6MBG6 (Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_77270 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 1.8e-142
Identity = 298/694 (42.94%), Postives = 398/694 (57.35%), Query Frame = 0


Query: 33  TIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGASFSSES 92
           ++KL+R N+ LWK+L LP++R  KL+ ++LGT+ CP  F++               SS+S
Sbjct: 18  SVKLDRNNYPLWKSLVLPVIRGCKLDGYMLGTEGCPEEFIT---------------SSDS 77

Query: 93  TTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQSRAEED 152
           + + N  +  W   DQ L+ W+ NSM +E+ATQ++ C T+K LWD  Q L G  +R++  
Sbjct: 78  SKNKNSAFVEWQANDQRLLGWMLNSMTTEIATQLLHCETSKQLWDEAQSLAGAHTRSQII 137

Query: 153 YLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYNPVVVG 212
           YL   F   RKG MKM +YL  MK   D L  A +PVST  LI Q L GLD EYNPVVV 
Sbjct: 138 YLKSEFHSIRKGEMKMEDYLIKMKNLVDKLKLAGNPVSTSDLIIQTLNGLDSEYNPVVVK 197

Query: 213 IQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYS 272
           +  +  +SW D Q  L  FE R+E  N   N  + + NA+ N+A        R   +  S
Sbjct: 198 LSDQTTLSWVDLQAQLLTFESRIEQLN---NLTNLTLNATANVA-------NRSDHRGKS 257

Query: 273 PNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFNKEYSP 332
            NN  R +N+   RG        GRGRG +  N   CQVCG   H A+ C++RF+K YS 
Sbjct: 258 SNNNWRGSNSRGWRG--------GRGRGKSGKNP--CQVCGLSNHIAIDCFHRFDKTYSR 317

Query: 333 STNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYANSGAS 392
           S   N  +  ++QG                        N FLA+  ++ D  WY +SGAS
Sbjct: 318 S---NHSAGHDKQG----------------------SHNAFLASQNSVEDYDWYFDSGAS 377

Query: 393 HHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAK 452
           +HVT       +  E+ G +S++VGNG +  I  TG+S L S    L L ++L  PN+ K
Sbjct: 378 NHVTHQTEKFQDLTEHHGKNSLVVGNGEKLAILATGSSKLKS----LNLHDILYVPNITK 437

Query: 453 NLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVDISQPI 512
           NL+S+S+LA DN+I +EF +  C VKDK TGK +LKG LK+GLY L+ T           
Sbjct: 438 NLLSVSKLAADNNILVEFDENCCFVKDKLTGKVILKGLLKDGLYQLSGT----------- 497

Query: 513 LSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLVNEEHY 572
                    K N  AF          K  WHR LGHP+ K+LD V+ SC + V  ++   
Sbjct: 498 ---------KRNPSAF-------VSVKESWHRRLGHPNNKVLDKVLESCKVKVPPSDNFS 557

Query: 573 FCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVW 632
           FC +CQYGK H LPF  S S A +  ELV++DVWGPAP++++SGF+YYV F+DD+SRF W
Sbjct: 558 FCEACQYGKMHLLPFKSSSSHAQEPLELVHTDVWGPAPIMTSSGFKYYVHFVDDFSRFTW 617

Query: 633 VYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSRYSCPY 692
           +YPLKQKS+T  AF  F  + + QFN  I+  Q D G E+  V +L  + GI+ R SCPY
Sbjct: 618 IYPLKQKSETVQAFIQFKNLTENQFNKRIKVIQCDGGGEYKPVQKLAVEAGIQFRMSCPY 620

Query: 693 TSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
           TSQQNGRAERKHRH+ E  LTLLAQA MPL +WW
Sbjct: 678 TSQQNGRAERKHRHITEFGLTLLAQAQMPLHYWW 620

[Close]

BLAST of Tan0005870 vs. ExPASy TrEMBL
Match: A0A2K3MUJ9 (Putative retrotransposon Ty1-copia subclass protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g017679 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.2e-138
Identity = 290/699 (41.49%), Postives = 394/699 (56.37%), Query Frame = 0


Query: 28  LNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGAS 87
           L    ++KL+R NF LWK+L LP++R  K + ++LGTK CP  F++              
Sbjct: 12  LPSTVSVKLDRDNFPLWKSLVLPLIRGCKYDGYMLGTKKCPDQFVT-------------- 71

Query: 88  FSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQS 147
            S ++T  INP Y+ W   DQ L+ WL NSM  ++ATQV+ C T+K LWD  Q L G  +
Sbjct: 72  -SIDNTEKINPDYQDWQADDQALLGWLMNSMTVDIATQVLHCETSKQLWDEAQSLAGAHT 131

Query: 148 RAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYN 207
           R+   YL   F  + K  MKM +YL  MK  AD L  A SP+S+  L+ Q L GLD EYN
Sbjct: 132 RSRIIYLKSEFHNTHKREMKMEQYLAKMKNLADKLKLAGSPISSSDLMIQTLNGLDSEYN 191

Query: 208 PVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQ 267
           PVVV +  +  ISW D Q  L  FE RL+  N   N    + NAS N A    +   +  
Sbjct: 192 PVVVKLSDQTNISWVDFQAQLLAFESRLDQLNNFNN---INLNASANFASKNESGGNK-- 251

Query: 268 QQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFN 327
              +      R +N+   RG      GRGR R  +   RPICQ+CGK GHTA  CY RF+
Sbjct: 252 ---FGSRGGWRGSNSRGMRG------GRGRAR-MSKPPRPICQICGKFGHTAAQCYYRFD 311

Query: 328 KEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYA 387
           K Y         ++ N    G  + S+                  F+A+P    D  WY 
Sbjct: 312 KSY---------TEKNHYAEGEGSHSA------------------FVASPYHGQDYEWYF 371

Query: 388 NSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCA 447
           +SGAS+HVT   G L +  E  G +S++VGNG +  I  +G++ L     ++ L+NVL  
Sbjct: 372 DSGASNHVTHQSGQLQDLNENNGKNSLLVGNGEKLKILASGSTKLN----DVNLRNVLYV 431

Query: 448 PNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVD 507
           P + KNL+S+S+L  DN+  +EF + YC VKDK TGK LLKG LK+GLY L+        
Sbjct: 432 PEITKNLLSVSKLTIDNNALVEFDENYCYVKDKLTGKALLKGRLKDGLYQLS-------- 491

Query: 508 ISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLV 567
                 ++ E    K+     S+        K  WHR LGHP+ K+L+ V++  N+ +  
Sbjct: 492 ------ANKEPPTNKDPCAYISL--------KEIWHRKLGHPNNKVLEKVLKDNNVKISP 551

Query: 568 NEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDY 627
           +++  FC +CQ+GK H LPF  S S A +  +L+++DVWGPAP+LS S F+YYV FLDD+
Sbjct: 552 SDKFTFCEACQFGKLHLLPFKTSSSHAKEPLDLIHTDVWGPAPILSQSNFKYYVHFLDDF 611

Query: 628 SRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSR 687
           SRF W++PLKQKS+T +AF  F  +V+ QFN  I+  + D G E+  V +     GI+ +
Sbjct: 612 SRFTWIFPLKQKSETIHAFNQFKNLVENQFNKKIKVIRCDGGGEYKPVQKCAIDSGIQFQ 627

Query: 688 YSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
            SCPYTSQQNGRAERKHRH+ E  LTLLAQA MPL +WW
Sbjct: 672 MSCPYTSQQNGRAERKHRHVTELGLTLLAQAKMPLSYWW 627

[Close]

BLAST of Tan0005870 vs. ExPASy TrEMBL
Match: A0A2K3NEN7 (Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 6.7e-137
Identity = 292/699 (41.77%), Postives = 405/699 (57.94%), Query Frame = 0


Query: 28  LNQVTTIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGAS 87
           L  + ++KL+R N+ LWK+L LP++R  K + ++LGTK CP  F++              
Sbjct: 13  LPSIISVKLDRDNYPLWKSLVLPLIRGCKFDGYILGTKECPEQFVT-------------- 72

Query: 88  FSSESTTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQS 147
            S++ +  +NP ++ WM  DQ L+ WL NSM  ++ATQ++ C T+K LWD  Q L G  +
Sbjct: 73  -SADKSKKVNPDFQDWMADDQALLGWLMNSMAIDIATQLLHCETSKQLWDEAQSLAGAHT 132

Query: 148 RAEEDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYN 207
           ++   YL   F  +RKG MKM EYL  MK  +D L  + SP+S   L+ Q L GLD EYN
Sbjct: 133 KSRIIYLKSEFHNTRKGEMKMEEYLIKMKNLSDKLKLSGSPISNSDLMIQTLNGLDAEYN 192

Query: 208 PVVVGIQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQ 267
           PVVV +  +  +SW D Q  L  FE RL+  N   N    + NAS N A     +++ + 
Sbjct: 193 PVVVKLSDQINLSWVDVQAQLLAFESRLDQLN---NFSGLTLNASANFA----NKTEFRG 252

Query: 268 QQNYSPNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFN 327
            + +S  N+ RS N    RG        GRG+G  SN +  CQVC   GHTA+ C  RF+
Sbjct: 253 NKFHSRGNWRRS-NFRGMRG--------GRGKGRMSNTK--CQVCSGTGHTAVDCSYRFD 312

Query: 328 KEYSPSTNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYA 387
           + Y   T +N  ++ ++QG           + + FVASP               D  WY 
Sbjct: 313 RSY---TGRNYSTEADKQG-----------SHSAFVASPYHGQ-----------DYEWYF 372

Query: 388 NSGASHHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCA 447
           +SGAS+HVT          E+ G +S++VGNG +  I  +G++ L +    L L +VL  
Sbjct: 373 DSGASNHVTHQTDKFQGFNEHNGKNSLMVGNGEKLKIVASGSTKLNT----LNLHDVLYV 432

Query: 448 PNMAKNLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVD 507
           P + KNL+S+S+L  DN+I++EF    C VKDK TG+ LLKG LK+GLY L+       D
Sbjct: 433 PQITKNLLSVSKLTADNNIFVEFDANCCSVKDKLTGQTLLKGRLKDGLYQLS-------D 492

Query: 508 ISQPILSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLV 567
           +S     SN     K+  V  SV        K  WHR LGHP+ K+L+ V++ CN+ +  
Sbjct: 493 VSP---QSN-----KDPCVYMSV--------KESWHRKLGHPNNKVLEKVLKDCNVKISP 552

Query: 568 NEEHYFCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDY 627
           +++  FC +CQ+GK H LPF  S S   +   L++SDVWGPAP+LS SGF+YYV F+DD+
Sbjct: 553 SDQFSFCEACQFGKLHLLPFKSSSSHVQEPLGLIHSDVWGPAPILSPSGFKYYVHFIDDF 612

Query: 628 SRFVWVYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSR 687
           SRF W++PLKQKSDT +AF  F  + + QFN  I+  Q D G E+  V ++  + GI+ R
Sbjct: 613 SRFTWIFPLKQKSDTIHAFIQFKNLAENQFNKKIKIIQCDGGGEYKAVQKVSIEAGIQFR 626

Query: 688 YSCPYTSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
            SCPYTSQQNGRAERKHRH+VE  LTLLAQA MPL +WW
Sbjct: 673 MSCPYTSQQNGRAERKHRHVVELGLTLLAQAKMPLRYWW 626

[Close]

BLAST of Tan0005870 vs. ExPASy TrEMBL
Match: A0A2K3LJ49 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g034552 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 6.7e-137
Identity = 290/694 (41.79%), Postives = 388/694 (55.91%), Query Frame = 0


Query: 33  TIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGASFSSES 92
           ++ L+R NF LWK+L LPI+R  +L+ ++LGTK CP  F++ A   G             
Sbjct: 18  SVMLDRENFPLWKSLVLPIIRGCRLDGYILGTKECPEQFITSAEASGK------------ 77

Query: 93  TTSINPLYEAWMTVDQLLISWLYNSMISEVATQVMGCNTAKDLWDVIQLLFGVQSRAEED 152
              INP +  W   DQ ++ WL N+M +  A+Q++ C T+K LW+  Q L    +R+   
Sbjct: 78  --KINPDFGDWQAEDQRVLGWLLNTMTTGTASQLLHCETSKQLWEEAQSLASAHTRSRVI 137

Query: 153 YLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYNPVVVG 212
           YL   F  +RKG  KM +YL  MK  AD L  A SP++   LI Q L GLD +YNP+VV 
Sbjct: 138 YLRSEFHNTRKGEKKMEDYLMKMKDLADKLKMAGSPITNVDLIIQTLNGLDSDYNPIVVK 197

Query: 213 IQGKYEISWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQNYS 272
           +  +  +SW D Q  L  FE RL+  N+  N    + NA+ N+A             N +
Sbjct: 198 LSDQINLSWVDLQAQLLAFESRLDQLNSFNN---LNRNATTNVA-------------NKA 257

Query: 273 PNNYNRSNNNNSQRGGTPNSRGRGRGRGYNSNNRPICQVCGKIGHTALVCYNRFNKEYSP 332
               N  N+  S RG +  +   GRG+G  SN+  ICQVC K GHTA+ C +R++K Y+ 
Sbjct: 258 QFRGNIYNHRGSWRGSSFRNTRGGRGKGRPSND--ICQVCNKHGHTAIECDHRYDKSYTG 317

Query: 333 STNQNRQSQPNQQGFGPNTSSSSFQAPNVFVASPNTPSNPFLATPETIGDPSWYANSGAS 392
           S+  N   +  +                          N FLA+     D  WY +SGAS
Sbjct: 318 SSYSNANVERQR------------------------THNAFLASRYNSQDYEWYFDSGAS 377

Query: 393 HHVTTDFGNLANPIEYGGMDSIIVGNGSQSPITFTGNSCLTSGKYNLRLQNVLCAPNMAK 452
           +HVT          E  G +S+IVGNG++  I  +G+S L     NL L +VL  P + K
Sbjct: 378 NHVTHQADKFQELTENSGKNSLIVGNGAKLKIDASGSSKLK----NLNLHDVLYVPQITK 437

Query: 453 NLISISRLAQDNDIYIEFHDTYCVVKDKGTGKQLLKGDLKEGLYCLANTLVKPVDISQPI 512
           NL+S+S+L  DN+I +EF +  C VKDK TGK LL+G LK+GLY L+N            
Sbjct: 438 NLLSVSKLTSDNNIIVEFDNDCCFVKDKLTGKVLLRGILKDGLYQLSN------------ 497

Query: 513 LSSNESKMYKNNSVAFSVCHKPNKVTKTFWHRHLGHPSTKILDSVIRSCNLPVLVNEEHY 572
                S+  K+  V  SV        K  WHR LGHPS  +LD V++ CN+    +++  
Sbjct: 498 ---GSSQTNKDPCVYLSV--------KESWHRKLGHPSNNVLDKVLKICNVKTSPSDKFK 557

Query: 573 FCNSCQYGKSHALPFSISESRASKKFELVYSDVWGPAPVLSTSGFRYYVLFLDDYSRFVW 632
           FC +CQ GKSH LPF  S S A +  EL+++DVWGPAP+ S SGF+YYV F+DD SRF W
Sbjct: 558 FCEACQLGKSHLLPFKSSSSHAQEVLELIHTDVWGPAPINSISGFKYYVHFIDDSSRFTW 617

Query: 633 VYPLKQKSDTGNAFQHFLAMVQTQFNGNIQSFQSDNGTEFLRVHQLCSQLGIKSRYSCPY 692
           +YPLKQKSDT +AF  F  MV+ QFN  I+  Q D G EF  V ++  + GIK R SCPY
Sbjct: 618 IYPLKQKSDTIHAFMQFKNMVENQFNKRIKIIQCDGGGEFKPVQKVALETGIKFRMSCPY 628

Query: 693 TSQQNGRAERKHRHLVETCLTLLAQASMPLVFWW 727
           TSQQNGRAERKHRH+ E  LTLLAQA+M L +WW
Sbjct: 678 TSQQNGRAERKHRHVAELGLTLLAQANMSLHYWW 628

[Close]

BLAST of Tan0005870 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-09
Identity = 72/278 (25.90%), Postives = 126/278 (45.32%), Query Frame = 0


Query: 33  TIKLERGNFLLWKNLALPILRSYKLESHLLGTKPCPPMFLSQARTEGNVTVEGASFSSES 92
           T+ L + N+ +W+ L   +  S+ +  H+ G+    PM      TE              
Sbjct: 25  TLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPM------TE-------------- 84

Query: 93  TTSINPLYEAWMTVDQLLISWLYNSMISEVATQV--MGCNTAKDLWDVIQLLFGVQSRAE 152
                   + W   D L+  W+Y ++   +   +  +GC TA+DLW  ++ LF     A 
Sbjct: 85  --------KRWKERDGLVKMWIYGTITDSLLDTIIKVGC-TARDLWLSLENLFRDNKEAR 144

Query: 153 EDYLCQTFQQSRKGNMKMSEYLRIMKCHADNLGQARSPVSTRSLISQVLLGLDEEYNPVV 212
                   + +   ++ + EY + +K  +D L    SP+S R L+  +L GL E+Y+ ++
Sbjct: 145 ALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYIL 204

Query: 213 VGIQGKYEI-SWADAQNDLFMFEKRLEFQNTQRNSVSFSHNASVNMAINRGTQSQRQQQQ 272
             I+ K    S+ +A++ L M E RL   N  ++S+S +++ S++  +    + Q +  Q
Sbjct: 205 NVIKHKSPFPSFTEARSMLLMEESRL--SNKSKSSLSHTNHPSLSNVLFTVPRQQERYPQ 264

Query: 273 NYSPNNYN--RSNNNNSQRGGTPNSRGRGRGRGYNSNN 306
            Y  NN N  R  +    RGG     G   GR YN+NN
Sbjct: 265 EYHNNNSNMGRGRSKKKNRGG-----GSSDGR-YNNNN 265

[Close]

BLAST of Tan0005870 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-05
Identity = 21/70 (30.00%), Postives = 33/70 (47.14%), Query Frame = 0


Query: 542 WHRHLGHPSTKILDSVIRSCNLPVLVNEEHYFCNSCQYGKSHALPFSISESRASKKFELV 601
           WH  L H S + ++ +++   L         FC  C YGK+H + FS  +       + V
Sbjct: 72  WHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYV 131

Query: 602 YSDVWGPAPV 612
           +SD+WG   V
Sbjct: 132 HSDLWGAPSV 141

The following BLAST results are available for this feature:

BLAST of Tan0005870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.4e-85	32.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.4e-83	32.20	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.8e-33	27.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q03494	1.8e-22	26.97	Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
Q12337	1.8e-22	26.97	Transposon Ty2-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]

BLAST of Tan0005870 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX76291.1	1.7e-142	42.86	gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium praten...	[more]
GAU19483.1	3.8e-142	42.94	hypothetical protein TSUD_77270 [Trifolium subterraneum]	[more]
PNX94503.1	2.5e-138	41.49	putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense...	[more]
PNY01489.1	1.4e-136	41.77	copia-like polyprotein, partial [Trifolium pratense]	[more]
PNX78574.1	1.4e-136	41.79	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense]	[more]

BLAST of Tan0005870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3LCM1	8.2e-143	42.86	Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) OS=Trifolium prat...	[more]
A0A2Z6MBG6	1.8e-142	42.94	Integrase catalytic domain-containing protein OS=Trifolium subterraneum OX=3900 ...	[more]
A0A2K3MUJ9	1.2e-138	41.49	Putative retrotransposon Ty1-copia subclass protein (Fragment) OS=Trifolium prat...	[more]
A0A2K3NEN7	6.7e-137	41.77	Copia-like polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g024786...	[more]
A0A2K3LJ49	6.7e-137	41.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens...	[more]

BLAST of Tan0005870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	1.4e-09	25.90	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
ATMG00300.1	1.6e-05	30.00	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 597..693 e-value: 4.7E-12 score: 46.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 593..755 score: 18.293158
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 523..582 e-value: 5.2E-11 score: 42.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 589..730 e-value: 3.5E-30 score: 106.7
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 103..234 e-value: 6.0E-9 score: 35.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 261..304
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 44..432
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 44..432
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 593..741

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005870.1	Tan0005870.1	mRNA
Tan0005870.2	Tan0005870.2	mRNA
Tan0005870.3	Tan0005870.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding