Tan0005836 (gene) Snake gourd v1

Overview
NameTan0005836
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionycf20-like protein
LocationLG07: 5524646 .. 5526365 (-)
RNA-Seq ExpressionTan0005836
SyntenyTan0005836
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGGCTTTGGATATGTGCTCTACATTTTCCAATCCCAATTCCCAAACTCGCGATTCTCTTTGCTCCGTCGACGAATAGCAGTTCTCCGGAGCGGAACCTGGAATCGAATTCTAGGTATTAATTTCCCCCTCATTTTCTCCCATTTTCCTTTCATTCTTGTTCAGGGCTCTTTCAGTTTTTTCAATCCTCCCGCTGGTGGAAACATTTATCAACTTCTGAAACTTGTCAAAATAAATTGATTTTCAAGTTCTCTCGCCTTAATTTTGCCTAATTTCTCCCTGTTTGGCTGCCGAGTAATATGAGAAGTATAATGGATTCAAGCAATTTCTTACTCTTGTTGTTTTGTTTTAGTCATTTCTATCAAATGTGGTTAAGATTTTTGTTCGGCGAGTGTTTGCAGTGTCATACATGGGGGTGAGGATTAATAATTTTTCATCATTTTGTTCAGAAATTGGAATTTGAAATTTCAAATACGATGATGGAAGTTATCAAATCCTAAGCGGTTCCTTAAGTTATTCATTGGGTGCTTTTTGGGGCTTATTATTATTTTTTCCAGTAACAAAGCAGAGAGCTATACCTTTTGAATGGTTCGTGAGTGGATTTTTTTTCTATTAAATCACAACTAAAGTCCAGTGGAAAGATGGATATTGTTTCTTGAATCTGAATTTATGTGTTTTCTGCTTATTGTTGTCATCGTTCAACATCAAATGAGATTCCAATCCTCCTTTAGATTGTGGCCCTGAGGGAGTCTTAAGTCATTTTTCATAACATTGCCAAACTCGAGTCTTTGTGTTTTATGTAAAAGTGACTCTTATTTGATCAGTTTTCTGTTATATTAAGCAAAATATTCTTCAGTGATCTCAGGTTCTCAACATTTTATTCAGCCATATAGGAAGTGAAACTTCAATGGCACAGTCTGCTAGTTTAGTCTCTACTAGCTTCCTAAACTATGGCTTTACTTCCAAAAGGAATGCTTTATATTGGAGATATGATATGATAAAATCACGTTCATCCCCTCGTAGTCTTCGTGTCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATAATTAGACTGGTGCCCGAGATCTCAAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTAGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTGTGTGTTCTGCTTACAGAGTATGTTACTCGATTTTATTACAGTCGACCAAAAGTAACTTTCCCCATTGCTCTACTCAACAACTTCAAAATGGGTTTCACTTATGGTCTCTTCATTGATGCTTTCAAACTTGCTAGTTAACTGCACTTGGTGAAGCCATTCTGGTGGCTAGCATATTTACATTTGTAAAGTTCTACCCTTCTCTTTTCTTTACTAATTTTGTTCCATATCTTTAAAGCTTGTTTTTATTGTTTTTGATGAACCCTGCCCTCCCTTCTTCATTGTTTTCTTCTGTATATTTTCATCTACAATTTACACTGAAGAGTTAATTCTGAACCTATTCACCCTCTTCAAATGCAATTGAGTAACAGATTTGAATGTAATTGATATCTTTTTTTAGTTTAGTTCTTGTTCATGTATTGAAATGCACCACTGTCAATGGAGAATTGTTTGATTCAACTGTTTCTTTCCAAAATACGTTCTGAG

mRNA sequence

TTCGGCTTTGGATATGTGCTCTACATTTTCCAATCCCAATTCCCAAACTCGCGATTCTCTTTGCTCCGTCGACGAATAGCAGTTCTCCGGAGCGGAACCTGGAATCGAATTCTAGTGATCTCAGGTTCTCAACATTTTATTCAGCCATATAGGAAGTGAAACTTCAATGGCACAGTCTGCTAGTTTAGTCTCTACTAGCTTCCTAAACTATGGCTTTACTTCCAAAAGGAATGCTTTATATTGGAGATATGATATGATAAAATCACGTTCATCCCCTCGTAGTCTTCGTGTCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATAATTAGACTGGTGCCCGAGATCTCAAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTAGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTGTGTGTTCTGCTTACAGAGTATGTTACTCGATTTTATTACAGTCGACCAAAAGTAACTTTCCCCATTGCTCTACTCAACAACTTCAAAATGGGTTTCACTTATGGTCTCTTCATTGATGCTTTCAAACTTGCTAGTTAACTGCACTTGGTGAAGCCATTCTGGTGGCTAGCATATTTACATTTGTAAAGTTCTACCCTTCTCTTTTCTTTACTAATTTTGTTCCATATCTTTAAAGCTTGTTTTTATTGTTTTTGATGAACCCTGCCCTCCCTTCTTCATTGTTTTCTTCTGTATATTTTCATCTACAATTTACACTGAAGAGTTAATTCTGAACCTATTCACCCTCTTCAAATGCAATTGAGTAACAGATTTGAATGTAATTGATATCTTTTTTTAGTTTAGTTCTTGTTCATGTATTGAAATGCACCACTGTCAATGGAGAATTGTTTGATTCAACTGTTTCTTTCCAAAATACGTTCTGAG

Coding sequence (CDS)

ATGGCACAGTCTGCTAGTTTAGTCTCTACTAGCTTCCTAAACTATGGCTTTACTTCCAAAAGGAATGCTTTATATTGGAGATATGATATGATAAAATCACGTTCATCCCCTCGTAGTCTTCGTGTCAAAGCTGTGCAAGATACTGGAGGTCCTCGTAGGTTAGTTGATATAATTAGACTGGTGCCCGAGATCTCAAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCCCTTTTTGGAGGAATCTCATTGTTGGGTGGCTTTTATGTAGCACAGACTATATCATTGTCATTTGGAGCTTTAGGAGTAAATGATGTGATTGCTGCTGTGGTGTGTGTTCTGCTTACAGAGTATGTTACTCGATTTTATTACAGTCGACCAAAAGTAACTTTCCCCATTGCTCTACTCAACAACTTCAAAATGGGTTTCACTTATGGTCTCTTCATTGATGCTTTCAAACTTGCTAGTTAA

Protein sequence

MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Homology
[Close]
BLAST of Tan0005836 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPIALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   I L NN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAATELTSKIVYSSHKQLNIKINLFNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
           FK+G TYGLF+DAFKL S
Sbjct: 91  FKIGITYGLFVDAFKLGS 108

[Close]
BLAST of Tan0005836 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0 

Query: 53  RLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCV 112
           RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +
Sbjct: 5   RLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAFIL 64

Query: 113 LLTEYVTRFYYSR--PKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           L  E V R++Y R          +LN FKMG +Y LF++AFKL S
Sbjct: 65  LFCELVNRWFYRRGVKMGDLQAEVLNIFKMGVSYSLFLEAFKLGS 109

[Close]
BLAST of Tan0005836 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-08
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 79  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPIALLNN 138
           G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    I LLNN
Sbjct: 31  GLISLLLGFFISTGLSTIPGQTGDWGIIAASLIVAAIELVSKIVYSNKKKYGVRINLLNN 90

Query: 139 FKMGFTYGLFIDAFKLAS 156
            K+G TYGLF+DAFKL S
Sbjct: 91  LKIGITYGLFVDAFKLGS 108

[Close]
BLAST of Tan0005836 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 0 

Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR----PKVTFPIALL--- 142
           LL GF++A  ++  FG  G  DV+ A + V + E +    YS+     K  F I+ L   
Sbjct: 35  LLLGFFIATVLATVFGQTGDWDVLVAGILVAMIEILGNKMYSKKYISKKQVFDISFLSLI 94

Query: 143 --NNFKMGFTYGLFIDAFKLAS 156
             N  K+G  +GLF+DAFKL S
Sbjct: 95  GINYIKIGLIFGLFVDAFKLGS 116

[Close]
BLAST of Tan0005836 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVST  LNY FT ++NA YWRYDMIKSR SPRSL +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of Tan0005836 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 3.2e-72
Identity = 143/155 (92.26%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVST  LNY FT ++NA YWRYD+IKSR SPRSL +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of Tan0005836 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima])

HSP 1 Score: 281.6 bits (719), Expect = 4.2e-72
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVST  LNY FT ++NA YWRYD+IKSR SPRSL +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of Tan0005836 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata])

HSP 1 Score: 281.2 bits (718), Expect = 5.5e-72
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVST  LNY FT ++NA YWRYD+IKSR SPRSL +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of Tan0005836 vs. NCBI nr
Match: XP_004143642.1 (uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein Csa_000018 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 9.3e-72
Identity = 145/156 (92.95%), Postives = 147/156 (94.23%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSR-SSPRSLRVKAVQDTGGPRRLVDIIR 60
           MAQSASLV TS LNYGFT K N  YWRYDM+KSR S PRS RVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]
BLAST of Tan0005836 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.0e-72
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVST  LNY FT ++NA YWRYD+IKSR SPRSL +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of Tan0005836 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 142/155 (91.61%), Postives = 148/155 (95.48%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLRVKAVQDTGGPRRLVDIIRL 60
           MAQSASLVST  LNY FT ++NA YWRYD+IKSR SPRSL +KAVQDTGGPRRLVDIIRL
Sbjct: 1   MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLCIKAVQDTGGPRRLVDIIRL 60

Query: 61  VPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120
           VPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Sbjct: 61  VPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR 120

Query: 121 FYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS 155

[Close]
BLAST of Tan0005836 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.5e-72
Identity = 145/156 (92.95%), Postives = 147/156 (94.23%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSR-SSPRSLRVKAVQDTGGPRRLVDIIR 60
           MAQSASLV TS LNYGFT K N  YWRYDM+KSR S PRS RVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSASLVHTSLLNYGFTPKMNPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]
BLAST of Tan0005836 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.5e-71
Identity = 142/156 (91.03%), Postives = 146/156 (93.59%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSR-SSPRSLRVKAVQDTGGPRRLVDIIR 60
           MAQS SLV T  LNYGF+ K N+ YWRYDM+KSR S PRS RVKAVQDTGGPRRLVDIIR
Sbjct: 1   MAQSTSLVHTGLLNYGFSLKMNSSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIR 60

Query: 61  LVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120
           LVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT
Sbjct: 61  LVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVT 120

Query: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 RFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156

[Close]
BLAST of Tan0005836 vs. ExPASy TrEMBL
Match: A0A5D3BMH1 (Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00540 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.9e-63
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 0 

Query: 22  NALYWRYDMIKSR-SSPRSLRVKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGG 81
           N  YWRYDM+KSR S PRS RVKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGG
Sbjct: 2   NPSYWRYDMVKSRPSPPRSFRVKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGG 61

Query: 82  ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKM 141
           ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKM
Sbjct: 62  ISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPIALLNNFKM 121

Query: 142 GFTYGLFIDAFKLAS 156
           GFTYGLFIDAFKLAS
Sbjct: 122 GFTYGLFIDAFKLAS 136

[Close]
BLAST of Tan0005836 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 198.4 bits (503), Expect = 4.3e-51
Identity = 109/158 (68.99%), Postives = 123/158 (77.85%), Query Frame = 0 

Query: 1   MAQSASLVSTSFLNYGFTSKRNALYWRYDMIKSRSSPRSLR-VKAVQDTGG--PRRLVDI 60
           MA S S +ST+  +      +   +  +     +   R  R ++A+Q+T G  PRRL+DI
Sbjct: 1   MAHSLSFISTNLNSLVLNHHQCQSFGTFVSSPFKRKRRFARSIRALQETEGPTPRRLIDI 60

Query: 61  IRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEY 120
           IR VPEISRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEY
Sbjct: 61  IRSVPEISRNYFKKPSRRTLFGGISLLGGFYVAQTISLSFGALGVNDVIAAVLCVLLTEY 120

Query: 121 VTRFYYSRPKVTFPIALLNNFKMGFTYGLFIDAFKLAS 156
           VTRFYYSR  VTFPIALLNNFKMGFTYGLFIDAFKLAS
Sbjct: 121 VTRFYYSRTTVTFPIALLNNFKMGFTYGLFIDAFKLAS 158

[Close]
BLAST of Tan0005836 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 43.5 bits (101), Expect = 1.8e-04
Identity = 28/80 (35.00%), Postives = 39/80 (48.75%), Query Frame = 0 

Query: 83  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPIALL 142
           LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   +  +
Sbjct: 118 LLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFM 177

Query: 143 NNFKMGFTYGLFIDAFKLAS 156
           N +K G   GLF+DAFKL S
Sbjct: 178 NFWKAGVCLGLFVDAFKLGS 197

The following BLAST results are available for this feature:
BLAST of Tan0005836 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1XDS21.2e-0847.44Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1[more]
P729833.4e-0835.24Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN... [more]
P512145.8e-0847.44Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1[more]
Q9MUL53.0e-0437.80Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1[more]
BLAST of Tan0005836 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579671.11.1e-7292.90hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023549885.13.2e-7292.26uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.... [more]
XP_022969949.14.2e-7291.61uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized... [more]
XP_022928979.15.5e-7291.61uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacteriz... [more]
XP_004143642.19.3e-7292.95uncharacterized protein ycf20 [Cucumis sativus] >KGN50402.1 hypothetical protein... [more]
BLAST of Tan0005836 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I4402.0e-7291.61uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 S... [more]
A0A6J1ESY72.6e-7291.61uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3... [more]
A0A0A0KPS14.5e-7292.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1[more]
A0A1S3CT338.5e-7191.03uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644... [more]
A0A5D3BMH12.9e-6394.81Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of Tan0005836 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G43050.14.3e-5168.99Protein of unknown function (DUF565) [more]
AT1G65420.11.8e-0435.00Protein of unknown function (DUF565) [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007572Uncharacterised protein family Ycf20PFAMPF04483DUF565coord: 101..155
e-value: 1.4E-18
score: 67.1
IPR007572Uncharacterised protein family Ycf20PANTHERPTHR33787FAMILY NOT NAMEDcoord: 1..155
NoneNo IPR availablePANTHERPTHR33787:SF5YCF20-LIKE PROTEINcoord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005836.1Tan0005836.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane