Tan0005821 (gene) Snake gourd v1

Overview
NameTan0005821
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGlycine-rich protein
LocationLG02: 3690328 .. 3690624 (+)
RNA-Seq ExpressionTan0005821
SyntenyTan0005821
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCCAACTCCAACAATAGGGCTTTTGCTTTTTTGGGTCTTGTCTTGGCCGTCATCGTCGTCAACATCTCCTCAGAAGTGGCGGCAAGAGACCTTTTACAGACTTCCAAGTACGGCCGGGGAGAGCACGGTGGCTCAGCCGACAGCCCTGGCTGCGGTAATTACTATAACAGACGATGCGGTGGATACGGTCGTGGTGGTGGTTGCCAGCATGGTTGCTGCGGTGACAATCGCGACGGTCGGTGCAGCAAGTGTTGCAGCTTTGCTATTGAAGTTGTAGACCTAAAATCTTAG

mRNA sequence

ATGAGTTCCAACTCCAACAATAGGGCTTTTGCTTTTTTGGGTCTTGTCTTGGCCGTCATCGTCGTCAACATCTCCTCAGAAGTGGCGGCAAGAGACCTTTTACAGACTTCCAAGTACGGCCGGGGAGAGCACGGTGGCTCAGCCGACAGCCCTGGCTGCGGTAATTACTATAACAGACGATGCGGTGGATACGGTCGTGGTGGTGGTTGCCAGCATGGTTGCTGCGGTGACAATCGCGACGGTCGGTGCAGCAAGTGTTGCAGCTTTGCTATTGAAGTTGTAGACCTAAAATCTTAG

Coding sequence (CDS)

ATGAGTTCCAACTCCAACAATAGGGCTTTTGCTTTTTTGGGTCTTGTCTTGGCCGTCATCGTCGTCAACATCTCCTCAGAAGTGGCGGCAAGAGACCTTTTACAGACTTCCAAGTACGGCCGGGGAGAGCACGGTGGCTCAGCCGACAGCCCTGGCTGCGGTAATTACTATAACAGACGATGCGGTGGATACGGTCGTGGTGGTGGTTGCCAGCATGGTTGCTGCGGTGACAATCGCGACGGTCGGTGCAGCAAGTGTTGCAGCTTTGCTATTGAAGTTGTAGACCTAAAATCTTAG

Protein sequence

MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHGGSADSPGCGNYYNRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEVVDLKS
Homology
BLAST of Tan0005821 vs. ExPASy Swiss-Prot
Match: P23137 (Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 7   NRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGR--GEHGGSADSPGCGN------YYN 66
           ++AF FLGL LA   + ISSEV A +L +TS   +  GE+G   D  G  N      YY 
Sbjct: 3   SKAFLFLGLCLAFFFL-ISSEVVAGELAETSNPMKLDGENGVDVDGRGGYNDVGGDGYYG 62

Query: 67  RRCGGYGRGG------GCQHGCCGDNRDGRCSKCCSFAIEVVD 96
              GG GRGG      GC++GCC    +G C +CCS+A E +D
Sbjct: 63  ---GGRGRGGGGYKRRGCRYGCCRKGYNG-CKRCCSYAGEAMD 100

BLAST of Tan0005821 vs. NCBI nr
Match: XP_023530312.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 64/96 (66.67%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 1  MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHG---GSADSPGCGNYY 60
          MSSN   +AFAFLGLVLA++VV+ISSEVAARDLLQT KY RG++G   G  D+PGCGNY 
Sbjct: 1  MSSNF-IKAFAFLGLVLAIVVVDISSEVAARDLLQT-KYSRGDNGSGSGVDDNPGCGNYI 60

Query: 61 NRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEV 94
          +  C G+G  GGCQHGCCG    GRCSKCCS   EV
Sbjct: 61 D-SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Tan0005821 vs. NCBI nr
Match: XP_022989540.1 (glycine-rich protein DC7.1-like [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-20
Identity = 63/97 (64.95%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1  MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHG---GSADSPGCGNYY 60
          MSSN   +AFAFLGLVL V+VV+ISSEVAARDLLQT KY RG++G   G  D PGCGNY+
Sbjct: 1  MSSNF-IKAFAFLGLVLGVVVVDISSEVAARDLLQT-KYSRGDNGSGSGVDDIPGCGNYF 60

Query: 61 NRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEVV 95
          +  C G+G  GGCQHGCCG    GRCSKCCS   E +
Sbjct: 61 D-SCRGHGPDGGCQHGCCGTKNGGRCSKCCSNVSEFI 94

BLAST of Tan0005821 vs. NCBI nr
Match: KAG6589123.1 (hypothetical protein SDJN03_17688, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-20
Identity = 64/96 (66.67%), Postives = 72/96 (75.00%), Query Frame = 0

Query: 1  MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHG---GSADSPGCGNYY 60
          MSSN   +AFAFLGLVL VIVV+ISS+VAARDLLQT KY RG++G   G  D+PGCGNY 
Sbjct: 1  MSSNF-IKAFAFLGLVLGVIVVDISSQVAARDLLQT-KYSRGDNGSGSGVDDNPGCGNYI 60

Query: 61 NRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEV 94
          +  C G+G  GGCQHGCCG    GRCSKCCS   EV
Sbjct: 61 D-SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Tan0005821 vs. NCBI nr
Match: XP_022930692.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 8.9e-20
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 0

Query: 1  MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHG---GSADSPGCGNYY 60
          MSSN   +AFAFLGLVL VIVV+ISSEVAARDLLQT KY RG +G   G  D+PGCGNY 
Sbjct: 1  MSSNF-IKAFAFLGLVLGVIVVDISSEVAARDLLQT-KYSRGGNGSGSGVDDNPGCGNYI 60

Query: 61 NRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEV 94
          +  C G+G  GGCQHGCCG    GRCSKCCS   EV
Sbjct: 61 D-SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Tan0005821 vs. NCBI nr
Match: KAA0059145.1 (hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK02545.1 hypothetical protein E5676_scaffold201G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 3  SNSNNRAFAFL-GLVLAVIVVNI-SSEVAARDLLQTSKYGRGEHGGSADSPGCGNYYNRR 62
          ++SN+R F F+  LV ++IVV + SS+VA RDLL         HG SAD+PGCGNY   R
Sbjct: 2  NHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDG------HGSSADTPGCGNY--NR 61

Query: 63 CGGYGRGG---GCQHGCCGDNRDGRCSKCCSFAIEVVDLK 98
          CGGYGRGG   GC HGCCG NR GRC +CC++A EV ++K
Sbjct: 62 CGGYGRGGGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVK 93

BLAST of Tan0005821 vs. ExPASy TrEMBL
Match: A0A6J1JMN0 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486603 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 63/97 (64.95%), Postives = 72/97 (74.23%), Query Frame = 0

Query: 1  MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHG---GSADSPGCGNYY 60
          MSSN   +AFAFLGLVL V+VV+ISSEVAARDLLQT KY RG++G   G  D PGCGNY+
Sbjct: 1  MSSNF-IKAFAFLGLVLGVVVVDISSEVAARDLLQT-KYSRGDNGSGSGVDDIPGCGNYF 60

Query: 61 NRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEVV 95
          +  C G+G  GGCQHGCCG    GRCSKCCS   E +
Sbjct: 61 D-SCRGHGPDGGCQHGCCGTKNGGRCSKCCSNVSEFI 94

BLAST of Tan0005821 vs. ExPASy TrEMBL
Match: A0A6J1ERA6 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437089 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.3e-20
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 0

Query: 1  MSSNSNNRAFAFLGLVLAVIVVNISSEVAARDLLQTSKYGRGEHG---GSADSPGCGNYY 60
          MSSN   +AFAFLGLVL VIVV+ISSEVAARDLLQT KY RG +G   G  D+PGCGNY 
Sbjct: 1  MSSNF-IKAFAFLGLVLGVIVVDISSEVAARDLLQT-KYSRGGNGSGSGVDDNPGCGNYI 60

Query: 61 NRRCGGYGRGGGCQHGCCGDNRDGRCSKCCSFAIEV 94
          +  C G+G  GGCQHGCCG    GRCSKCCS   EV
Sbjct: 61 D-SCRGHGPVGGCQHGCCGTKNGGRCSKCCSNVSEV 93

BLAST of Tan0005821 vs. ExPASy TrEMBL
Match: A0A5D3BTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00260 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0

Query: 3  SNSNNRAFAFL-GLVLAVIVVNI-SSEVAARDLLQTSKYGRGEHGGSADSPGCGNYYNRR 62
          ++SN+R F F+  LV ++IVV + SS+VA RDLL         HG SAD+PGCGNY   R
Sbjct: 2  NHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDG------HGSSADTPGCGNY--NR 61

Query: 63 CGGYGRGG---GCQHGCCGDNRDGRCSKCCSFAIEVVDLK 98
          CGGYGRGG   GC HGCCG NR GRC +CC++A EV ++K
Sbjct: 62 CGGYGRGGGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVK 93

BLAST of Tan0005821 vs. ExPASy TrEMBL
Match: A0A0A0K6K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 5  SNNRAFAFL-GLVLAVIVVNI-SSEVAARDLLQTSKYGRGEHGGSADSPGCGNYYNRRCG 64
          SN++ F F+  LV +++VV + S +VAARDLL   +      G SAD+PGCGNYY  RCG
Sbjct: 4  SNSKHFPFVTTLVFSIVVVLVLSPKVAARDLLSDGR------GSSADTPGCGNYY--RCG 63

Query: 65 GYGRGG---GCQHGCCGDNRDGRCSKCCSFAIEVVDL 97
          GYGRGG   GC HGCCG NRDGRC +CC++A EV ++
Sbjct: 64 GYGRGGGGNGCSHGCCGFNRDGRCIQCCNYANEVTNV 92

BLAST of Tan0005821 vs. ExPASy TrEMBL
Match: W9RMN0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020245 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 48/118 (40.68%), Postives = 61/118 (51.69%), Query Frame = 0

Query: 7   NRAFAFLGLVLAVIVVNISSEVAARDLLQTSK--------------YGRGEHGGSADSPG 66
           ++ F  LGL+ A+++V ISSEVAA+D+ +TS                G  +HGG    PG
Sbjct: 3   SKVFFLLGLLFAIVLV-ISSEVAAKDVAETSTDENAVDAADEKANGVGDAKHGGYGGYPG 62

Query: 67  CGNYYNRRCGGYGRGG--------------GCQHGCCGDNRDGR-CSKCCSFAIEVVD 96
            GNY   R GG G GG              GC HGCC  N  G+ CS+CCS+A E VD
Sbjct: 63  GGNYGGGRGGGGGHGGYGGGGGYGGGSRRRGCYHGCCRRNYYGKGCSRCCSYAGEAVD 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P231372.0e-0642.72Glycine-rich protein OS=Nicotiana tabacum OX=4097 GN=GRP PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_023530312.11.8e-2066.67glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo][more]
XP_022989540.12.4e-2064.95glycine-rich protein DC7.1-like [Cucurbita maxima][more]
KAG6589123.16.8e-2066.67hypothetical protein SDJN03_17688, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022930692.18.9e-2067.71glycine-rich protein DC7.1-like [Cucurbita moschata][more]
KAA0059145.12.1e-1656.00hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK0254... [more]
Match NameE-valueIdentityDescription
A0A6J1JMN01.1e-2064.95glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486603 PE=4... [more]
A0A6J1ERA64.3e-2067.71glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437089 PE... [more]
A0A5D3BTN81.0e-1656.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6K92.9e-1655.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1[more]
W9RMN05.0e-0840.68Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020245 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005821.1Tan0005821.1mRNA