Tan0005787 (gene) Snake gourd v1

Overview


Name	Tan0005787
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	(thale cress) hypothetical protein
Location	LG07: 3713646 .. 3714388 (+)
RNA-Seq Expression	Tan0005787
Synteny	Tan0005787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATCCCAACGCTTCAAGAAACCTCTCGGAATTTGGAATTCCCCCCTCCTTTATAAACCAAATCTCTTCATCAAATTCCTCACCACCAATCCAAGAATCAACAAACAACAAACAACAAGAAGCAAAGAATTGTTCAATCGAATCGAAGAAGATGAATTCTATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAATTGATCCTCGGCAAATTCGTTAGGGCTTCTTCTTCTGTCCCTTCCTTCACTCCTAACAACGGCGGCGCTGTCTCTTCTGATTCTCTGAAGTCGCCGCCGATCAGCAAGAAGGGCGAACCTAACTCCAAGAATTCGTCCATGAGGCCCAGATTTGCTCTGGAGTTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGACGTCTCTCACTACTTTTATCGCTTTCTACCTAACTGATTCTTTTGATTCTTTCGTTTAAATTAGGGCTTTCTTGGAGAATACAGAGTGCTCTTTTTTTGTTCGCGTTTATGTTACACGGAATTAGACGATTGATTGTGTTCTGCGTTTCGTTGGAATTTGATATATGGAATGAAAAACACACAACTCGTTGATTCGTTACTCTTTGTTCTTCTTCTTCTTCTTCTTCTTCCTTGATTTTCTTGTTCCTTCTCGTTCTCTTTCCCGTTCCTTATTTATTTATTTGTTTTCTCCTCCTTATATGGAATTATCGTAATCGAGAATTTGAAAACTCTGAAATCTCAA

mRNA sequence

ATTAAATCCCAACGCTTCAAGAAACCTCTCGGAATTTGGAATTCCCCCCTCCTTTATAAACCAAATCTCTTCATCAAATTCCTCACCACCAATCCAAGAATCAACAAACAACAAACAACAAGAAGCAAAGAATTGTTCAATCGAATCGAAGAAGATGAATTCTATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAATTGATCCTCGGCAAATTCGTTAGGGCTTCTTCTTCTGTCCCTTCCTTCACTCCTAACAACGGCGGCGCTGTCTCTTCTGATTCTCTGAAGTCGCCGCCGATCAGCAAGAAGGGCGAACCTAACTCCAAGAATTCGTCCATGAGGCCCAGATTTGCTCTGGAGTTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGACGTCTCTCACTACTTTTATCGCTTTCTACCTAACTGATTCTTTTGATTCTTTCGTTTAAATTAGGGCTTTCTTGGAGAATACAGAGTGCTCTTTTTTTGTTCGCGTTTATGTTACACGGAATTAGACGATTGATTGTGTTCTGCGTTTCGTTGGAATTTGATATATGGAATGAAAAACACACAACTCGTTGATTCGTTACTCTTTGTTCTTCTTCTTCTTCTTCTTCTTCCTTGATTTTCTTGTTCCTTCTCGTTCTCTTTCCCGTTCCTTATTTATTTATTTGTTTTCTCCTCCTTATATGGAATTATCGTAATCGAGAATTTGAAAACTCTGAAATCTCAA

Coding sequence (CDS)

ATGAATTCTATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAATTGATCCTCGGCAAATTCGTTAGGGCTTCTTCTTCTGTCCCTTCCTTCACTCCTAACAACGGCGGCGCTGTCTCTTCTGATTCTCTGAAGTCGCCGCCGATCAGCAAGAAGGGCGAACCTAACTCCAAGAATTCGTCCATGAGGCCCAGATTTGCTCTGGAGTTCGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA

Protein sequence

MNSMFSLFDAFAAELILGKFVRASSSVPSFTPNNGGAVSSDSLKSPPISKKGEPNSKNSSMRPRFALEFDGLNCFETLVPN

Homology

[Close]

BLAST of Tan0005787 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPNNGGAVSSDSLKSP-PISKKGEPNSKNS 60
          MNSMFSLFDAFAAE +LG FVRASSSVPSFTPNN  A  S ++  P P  K+ EP SKNS
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNA--SPAVPKPLPSKKEEEPKSKNS 60

Query: 61 SMRPRFALEFDGLNCFETLVPN 82
           M+PRFALE DGLNCFETLVPN
Sbjct: 61 LMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Tan0005787 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-20
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPN--NGGAVSSDSLKSPPISKKGEPN--- 60
          MNSMFS FDAFAAE+++GKFV AS+SVPSFTPN   GG+ SS  +KS P  KK E N   
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMP-GKKDEANAVA 60

Query: 61 -SKNSSMRPRFALEFDGLNCFETLVPN 82
           SKNSSM+PRFALE DGLNCFETLVPN
Sbjct: 61 KSKNSSMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Tan0005787 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-20
Identity = 61/84 (72.62%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILG-KFVRASSSVPSFTP--NNGGAVSSDSLKSPPISKKGEPNSK 60
          MNSMFSLFDAFAAE +LG  FVRASSS+PSFTP  NN  A SS   K  P  KK EP  K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 NSSMRPRFALEFDGLNCFETLVPN 82
          NSS++PRFALE DGLNCFETLVPN
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of Tan0005787 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1   MNSMFSLFDAFAAELILGKFVRASSSVPSFTPN--NGGAVSSDSLKSPPISKKGEPN--- 60
           MNSMFS FDAFAAE++LGKFV AS+SVPSFTPN   GG+ SS  +KS P  KK E N   
Sbjct: 81  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMP-GKKEEANAVA 140

Query: 61  -SKNSSMRPRFALEFDGLNCFETLVPN 82
            SKNS M+PRFALE DGLNCFETLVPN
Sbjct: 141 KSKNSLMKPRFALELDGLNCFETLVPN 166

[Close]

BLAST of Tan0005787 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-20
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPN--NGGAVSSDSLKSPPISKKGEPN--- 60
          MNSMFS FDAFAAE++LGKFV AS+SVPSFTPN   GG+ SS  +KS P  KK E N   
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMP-GKKEEANAVA 60

Query: 61 -SKNSSMRPRFALEFDGLNCFETLVPN 82
           SKNS M+PRFALE DGLNCFETLVPN
Sbjct: 61 KSKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Tan0005787 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.0e-22
Identity = 61/82 (74.39%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPNNGGAVSSDSLKSP-PISKKGEPNSKNS 60
          MNSMFSLFDAFAAE +LG FVRASSSVPSFTPNN  A  S ++  P P  K+ EP SKNS
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNA--SPAVPKPLPSKKEEEPKSKNS 60

Query: 61 SMRPRFALEFDGLNCFETLVPN 82
           M+PRFALE DGLNCFETLVPN
Sbjct: 61 LMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Tan0005787 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.2e-21
Identity = 61/84 (72.62%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILG-KFVRASSSVPSFTP--NNGGAVSSDSLKSPPISKKGEPNSK 60
          MNSMFSLFDAFAAE +LG  FVRASSS+PSFTP  NN  A SS   K  P  KK EP  K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 NSSMRPRFALEFDGLNCFETLVPN 82
          NSS++PRFALE DGLNCFETLVPN
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of Tan0005787 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 62/87 (71.26%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPN--NGGAVSSDSLKSPPISKKGEPN--- 60
          MNSMFS FDAFAAE++LGKFV AS+SVPSFTPN   GG+ SS  +KS P  KK E N   
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMP-GKKEEANAVA 60

Query: 61 -SKNSSMRPRFALEFDGLNCFETLVPN 82
           SKNS M+PRFALE DGLNCFETLVPN
Sbjct: 61 KSKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Tan0005787 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.0e-12
Identity = 49/82 (59.76%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPNN--GGAVSSDSLKSPPISKKGEPNSKN 60
          MNSMFSLFDAFAAEL++ K  RASS   SF PNN  GG+V S    + P + +   ++KN
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASS---SFAPNNGSGGSVKSPPSNAAPDNLEQPKSNKN 60

Query: 61 SSMR-PRFALEFDGLNCFETLV 80
          S +R PR A EFDGLNCFETLV
Sbjct: 61 SLLRPPRLAPEFDGLNCFETLV 79

[Close]

BLAST of Tan0005787 vs. ExPASy TrEMBL
Match: A0A5C7H1W0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 44/87 (50.57%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVR--------ASSSVPSFTPNNGGAVSSDSLKSPPISKKG 60
          MNS+FS FDAF+AEL LG+ VR         SS+  +   NN    S +S K   I+KK 
Sbjct: 1  MNSIFSSFDAFSAEL-LGQKVRVSFAPTTTCSSTNATQKNNNNNLQSQESTKDVAINKK- 60

Query: 61 EPNSKNSSMRPRFALEFDGLNCFETLV 80
             S +SS +PRFA E DGLNCFETLV
Sbjct: 61 --TSTSSSSKPRFAPELDGLNCFETLV 83

[Close]

BLAST of Tan0005787 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPNNGGAVSSDSLKSPPIS-KKGEPNSKNS 60
          MNSMFS FDA  AE I+GK V A+S V     N+  + SS   ++  +S KK E  SKN 
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 SM---RPRFALEFDGLNCFETLV 80
           +    PRFALE DGL+CFET+V
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Tan0005787 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-06
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELILGKFVRASSSVPSFTPNNGGAVSSDSLKSPPISKKGEPNSKNSS 60
          MNSMFS FDA  AE ++GK + ASS   +       A      +     +K   +SK   
Sbjct: 1  MNSMFSAFDALFAE-VMGKNLMASSFTATTATTKPAAAPQTQTQ-----EKANASSKKIG 60

Query: 61 M---RPRFALEFDGLNCFETLV 80
          +    PRFALE DGL+CFET+V
Sbjct: 61 LVQKIPRFALELDGLHCFETIV 76

The following BLAST results are available for this feature:

BLAST of Tan0005787 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005787 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654674.1	1.0e-21	74.39	uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
XP_023522684.1	1.1e-20	71.26	uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]	[more]
KAA0042638.1	1.5e-20	72.62	uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG6579594.1	4.3e-20	71.26	hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929066.1	4.3e-20	71.26	uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet...	[more]

BLAST of Tan0005787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8	5.0e-22	74.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1	[more]
A0A5D3C6N3	7.2e-21	72.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EM23	2.1e-20	71.26	uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A6J1E0L6	8.0e-12	59.76	uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A5C7H1W0	1.3e-06	50.57	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1	[more]

BLAST of Tan0005787 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32928.1	1.6e-09	50.60	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G32920.1	3.8e-06	41.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..62
None	No IPR available	PANTHER	PTHR33641:SF2	BNAA08G06880D PROTEIN	coord: 1..81
None	No IPR available	PANTHER	PTHR33641	OS06G0133500 PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005787.1	Tan0005787.1	mRNA