Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATACAATCATCGACGAGGATCCTTGGATTGATAGGGAAGGGAGTTTCAAAGTCCTAATGACTAAGGACTCTATTAAAGGGAGGTGTGTCAATTCCCTCATCACTAATACATGCATTTGGAATCTGGAAGCTCTGAACAACAACTTCCTCCCCGCAGATGTCGAAGTAATTGCCAGAATTCCCATTGAGCCCCACGCTAACAAAGATGAAATCATTTGGGGTTTGGATCCTAAGGGTCGTTTCTCCGTTACAAGTGCCTACCACCTTGCTTTAAACATCTCCCAAAAGGATGATGTCGCCACCTCTGATCTTAAGCATCAAAAAGATGAGTGGAAAGCTTTTTGGAAGATAGATTTCATCCCACGTCATAAGATGATTGCTTGGCCTATCCTCCAAGACATCATCCTAACAAGGAAAAACCTCATGAAAAGAGGAATTGATTCTAACCCCTTGTGTTTATTTTGCAGGAAAAAGCTGGAAACTTCTATGCACATAATCTGGGGTTGTAAGTTCTCTAAAGGCCTATGGAAAGACTTTTTTCCTCATCTAATAGATTTTCTAAACTCTTGTTGGGATGATTGGCCCCCTTTTGTCTGCTGGAATGCTCTAACCAACCATCTAAAGGATGCAGATCAAAGAAAAGCCATAACAATTATGTGGAGTTTATGGGAGGTCAAAAACAAATCTCTTACACACAATCTTCCTCCCAACAAAGAGCTTATCGCTAAGAGGATAGAGACAAGTACCTGTCATCGCGATATCCACACCCCTCTCAGTTCTGTCAGCAAGTCCTCGAAGACCCTAGCGAGTCACAGGCATTGGGATCCTCCTCCGATCGGTTGGTGGAAGTTGAACACCAACGCGACCTGGTTTGAAGAAAAACAAAAAGGTAGCTTAGGTTGGACTGTCCGTGACTCTTCAGGTTCTTCGATATATGTTGGTATCCAATTGATCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTAGCTTAA
mRNA sequence
ATGAGGCATACAATCATCGACGAGGATCCTTGGATTGATAGGGAAGGGAGTTTCAAAGTCCTAATGACTAAGGACTCTATTAAAGGGAGGTGTGTCAATTCCCTCATCACTAATACATGCATTTGGAATCTGGAAGCTCTGAACAACAACTTCCTCCCCGCAGATGTCGAAGTAATTGCCAGAATTCCCATTGAGCCCCACGCTAACAAAGATGAAATCATTTGGGGTTTGGATCCTAAGGGTCGTTTCTCCGTTACAAGTGCCTACCACCTTGCTTTAAACATCTCCCAAAAGGATGATTTCTCTAAAGGCCTATGGAAAGACTTTTTTCCTCATCTAATAGATTTTCTAAACTCTTGTTGGGATGATTGGCCCCCTTTTGTCTGCTGGAATGCTCTAACCAACCATCTAAAGGATGCAGATCAAAGAAAAGCCATAACAATTATGTGGAGTTTATGGGAGGTCAAAAACAAATCTCTTACACACAATCTTCCTCCCAACAAAGAGCTTATCGCTAAGAGGATAGAGACAAGTACCTGTCATCGCGATATCCACACCCCTCTCAGTTCTGTCAGCAAGTCCTCGAAGACCCTAGCGAGTCACAGGCATTGGGATCCTCCTCCGATCGGTTGGTGGAAGTTGAACACCAACGCGACCTGGTTTGAAGAAAAACAAAAAGGTAGCTTAGGTTGGACTGTCCGTGACTCTTCAGGTTCTTCGATATATGTTGGTATCCAATTGATCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTAGCTTAA
Coding sequence (CDS)
ATGAGGCATACAATCATCGACGAGGATCCTTGGATTGATAGGGAAGGGAGTTTCAAAGTCCTAATGACTAAGGACTCTATTAAAGGGAGGTGTGTCAATTCCCTCATCACTAATACATGCATTTGGAATCTGGAAGCTCTGAACAACAACTTCCTCCCCGCAGATGTCGAAGTAATTGCCAGAATTCCCATTGAGCCCCACGCTAACAAAGATGAAATCATTTGGGGTTTGGATCCTAAGGGTCGTTTCTCCGTTACAAGTGCCTACCACCTTGCTTTAAACATCTCCCAAAAGGATGATTTCTCTAAAGGCCTATGGAAAGACTTTTTTCCTCATCTAATAGATTTTCTAAACTCTTGTTGGGATGATTGGCCCCCTTTTGTCTGCTGGAATGCTCTAACCAACCATCTAAAGGATGCAGATCAAAGAAAAGCCATAACAATTATGTGGAGTTTATGGGAGGTCAAAAACAAATCTCTTACACACAATCTTCCTCCCAACAAAGAGCTTATCGCTAAGAGGATAGAGACAAGTACCTGTCATCGCGATATCCACACCCCTCTCAGTTCTGTCAGCAAGTCCTCGAAGACCCTAGCGAGTCACAGGCATTGGGATCCTCCTCCGATCGGTTGGTGGAAGTTGAACACCAACGCGACCTGGTTTGAAGAAAAACAAAAAGGTAGCTTAGGTTGGACTGTCCGTGACTCTTCAGGTTCTTCGATATATGTTGGTATCCAATTGATCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTAGCTTAA
Protein sequence
MRHTIIDEDPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHANKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKGLWKDFFPHLIDFLNSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKAILLA
Homology
BLAST of Tan0005760 vs. NCBI nr
Match:
ABB46931.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])
HSP 1 Score: 103.2 bits (256), Expect = 3.5e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPWI R S + + K + + R V+ LI + W+ + ++ +FLP D E I I +
Sbjct: 1472 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1531
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
D I W D GRFSV SAYHLA+ ++ D+ S LWK P ++ L
Sbjct: 1532 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1591
Query: 129 NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
++ + P + L + DQ + ++W +W +N+ + H P L++KR
Sbjct: 1592 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1651
Query: 189 STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
S H + L S+ +S + + W P G KLN +
Sbjct: 1652 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1711
Query: 249 ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
++ E KG +G +R+ +G I+ ++ C S EL A
Sbjct: 1712 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1750
BLAST of Tan0005760 vs. NCBI nr
Match:
AAM01179.2 (Putative retroelement [Oryza sativa Japonica Group])
HSP 1 Score: 103.2 bits (256), Expect = 3.5e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPWI R S + + K + + R V+ LI + W+ + ++ +FLP D E I I +
Sbjct: 1507 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1566
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
D I W D GRFSV SAYHLA+ ++ D+ S LWK P ++ L
Sbjct: 1567 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1626
Query: 129 NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
++ + P + L + DQ + ++W +W +N+ + H P L++KR
Sbjct: 1627 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1686
Query: 189 STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
S H + L S+ +S + + W P G KLN +
Sbjct: 1687 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1746
Query: 249 ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
++ E KG +G +R+ +G I+ ++ C S EL A
Sbjct: 1747 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1785
BLAST of Tan0005760 vs. NCBI nr
Match:
XP_031131710.1 (uncharacterized protein LOC116033095 [Ipomoea triloba])
HSP 1 Score: 100.1 bits (248), Expect = 3.0e-17
Identity = 66/251 (26.29%), Postives = 119/251 (47.41%), Query Frame = 0
Query: 8 EDPWI-DREGSFKVLMTKDSIKGRCVNSLI-TNTCIWNLEALNNNFLPADVEVIARIPIE 67
EDPW+ D++ F + V+SL+ T W+ E L++ FL D E I RIPI
Sbjct: 774 EDPWLPDQQSHFVQTPEPIYLHDAKVSSLLNTQGYNWDTEILDDLFLANDKEQILRIPIP 833
Query: 68 PHANKDEIIWGLDPKGRFSVTSAYHLALN--ISQKDDFSKGLWKDFFP----HLIDFLNS 127
+ D++IW + G+F+V+S Y + +Q+D WK P + + F
Sbjct: 834 SLPHDDKLIWCREENGKFTVSSCYRKLVGEMDAQEDASRTQFWKLPIPPKVKNFLCFTKD 893
Query: 128 CW--------DDWPPFVCWNALTNHLKDADQRKAITIM---WSLWEVKNKSLTHNLPPNK 187
CW ++ F W ++N++K D ++ W +WE +N + N PPN
Sbjct: 894 CWRKLNILNVNNANQFHNW--ISNNMKAPDSNLLCLLLVTCWKIWETRNHKVWSNSPPNY 953
Query: 188 ELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGS 240
++ ++ + + + + V+ ++ + W PP+GW K+N +A + E S
Sbjct: 954 VVV---VDGARGFLNAWSNMQIVNLKTENCLHNSRWQKPPLGWTKMNVDAACYNELCITS 1013
BLAST of Tan0005760 vs. NCBI nr
Match:
XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])
HSP 1 Score: 98.6 bits (244), Expect = 8.6e-17
Identity = 78/352 (22.16%), Postives = 137/352 (38.92%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPWI R+ S + + + + + + V+ LI W++ + FL D E+I I + P
Sbjct: 36 DPWIPRDHSRRPVTMRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNIDTELILSICLSPRQ 95
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKG-----------LWKDFFPHLI--- 128
+D + W LD GRFSV SAY+LA ++ + S +WK P I
Sbjct: 96 EEDFLAWHLDKFGRFSVRSAYNLACRLANTEGSSSSSALHSRKSWDLIWKCKLPQKIKIF 155
Query: 129 ------------------------------------------------------------ 188
Sbjct: 156 AWKVASNCLATMDNKRKRKLVNSDICIICNREVENSVHALCKCPRASALLSDMVQSGNLS 215
Query: 189 -DFLNSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAK 248
D +N + ++ F C +L + + +W W V+N+ +THN PP ++K
Sbjct: 216 LDLVNFQFGNYWLFDC----LEYLPTEEHEMFLLTLWRNWYVRNE-ITHNKPPPPLEVSK 275
Query: 249 RIETSTC----------HRDIHTPLSSVSKS------------SKTLASHRHWDPPPIGW 264
R S H D+ + VS+S T ++ HW+ P +GW
Sbjct: 276 RFLESYIATLFQIREYPHADLEKGKTVVSRSVISALRRRGPDGPPTASTRLHWEKPRLGW 335
BLAST of Tan0005760 vs. NCBI nr
Match:
XP_038722039.1 (uncharacterized protein LOC120014190 [Tripterygium wilfordii])
HSP 1 Score: 95.5 bits (236), Expect = 7.3e-16
Identity = 66/243 (27.16%), Postives = 103/243 (42.39%), Query Frame = 0
Query: 9 DPWIDREGSFKVL--MTKDSIKGRCVNSLITN-TCIWNLEALNNNFLPADVEVIARIPIE 68
D W+ R +FK + + D IKG V SLI T W+++ + N+F+P+DVE+I IPI
Sbjct: 328 DTWLPRPVTFKPISWLPDDIIKGAPVASLINQATHSWDIDRVQNSFIPSDVELILSIPIS 387
Query: 69 PHANKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKGLWKDFFPHLIDFLNSCWDDWP 128
P D I+W D KGRFS+ S YH+A + K + S G D P
Sbjct: 388 PFRAVDHILWHWDSKGRFSIKSTYHVAQGL--KAEISVG------------------DLP 447
Query: 129 PFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIETSTCHRDIH 188
P + L H + I W +W +N L + + + +
Sbjct: 448 PLIYAPILGLHQPPSKACLFICSAWVIWNNQNNFLHNQRSRDAAETMSFVCSYVQELSAL 507
Query: 189 TPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGI 248
+S+ ++ W PP + +KLN + F Q +G +RD G +
Sbjct: 508 ATRASLPTQARVPTQSGCWQPPSLNGFKLNVDGAVFAADQSIGIGGVLRDHKGEVFMSFV 550
BLAST of Tan0005760 vs. ExPASy TrEMBL
Match:
Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)
HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPWI R S + + K + + R V+ LI + W+ + ++ +FLP D E I I +
Sbjct: 1507 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1566
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
D I W D GRFSV SAYHLA+ ++ D+ S LWK P ++ L
Sbjct: 1567 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1626
Query: 129 NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
++ + P + L + DQ + ++W +W +N+ + H P L++KR
Sbjct: 1627 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1686
Query: 189 STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
S H + L S+ +S + + W P G KLN +
Sbjct: 1687 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1746
Query: 249 ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
++ E KG +G +R+ +G I+ ++ C S EL A
Sbjct: 1747 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1785
BLAST of Tan0005760 vs. ExPASy TrEMBL
Match:
Q33AJ4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g09610 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPWI R S + + K + + R V+ LI + W+ + ++ +FLP D E I I +
Sbjct: 1472 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1531
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
D I W D GRFSV SAYHLA+ ++ D+ S LWK P ++ L
Sbjct: 1532 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1591
Query: 129 NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
++ + P + L + DQ + ++W +W +N+ + H P L++KR
Sbjct: 1592 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1651
Query: 189 STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
S H + L S+ +S + + W P G KLN +
Sbjct: 1652 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1711
Query: 249 ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
++ E KG +G +R+ +G I+ ++ C S EL A
Sbjct: 1712 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1750
BLAST of Tan0005760 vs. ExPASy TrEMBL
Match:
Q75M12 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=P0431G05.11 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 67/271 (24.72%), Postives = 114/271 (42.07%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPWI R+ S + + +K + + + V+ LI W+ +N FL D ++I +I I
Sbjct: 1577 DPWIPRDLSRRPVSSKANCRLKWVSDLIAEDGTWDSAKINQYFLKIDADIIQKICISARL 1636
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKG-----------LWKDFFPHLIDFL 128
+D I W D GRFSV SAY LAL ++ ++ S +WK P +
Sbjct: 1637 EEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIF 1696
Query: 129 NSCWDDWPPFVCWNALTNHLKDADQRKAITI----MWSLWE-------------VKNKSL 188
W +N L + +K + + + + V SL
Sbjct: 1697 -----------AWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSL 1756
Query: 189 THNLPPNKELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATW 248
NL K +++ +T + HTP A +R W+ P GW KLN + ++
Sbjct: 1757 WVNLEKGKYVVSVNFPKTTAIK--HTP----------GAENRRWERPRNGWMKLNVDGSF 1816
Query: 249 FEEKQKGSLGWTVRDSSGSSIYVGIQLINTC 252
+KG +G +R+ G+ I+ + +++C
Sbjct: 1817 DINSEKGGIGMILRNCLGNVIFSSCRSLDSC 1824
BLAST of Tan0005760 vs. ExPASy TrEMBL
Match:
Q2QUC2 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g16750 PE=4 SV=1)
HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 80/353 (22.66%), Postives = 131/353 (37.11%), Query Frame = 0
Query: 2 RHTIIDEDPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIAR 61
R I DPWI R+ S + + TK + + + V+ L+ W+++ ++ FLP D + I +
Sbjct: 1505 RSVRIWRDPWIPRDHSCRPITTKRNCRVKWVSDLLGQDGSWDVQKVSRVFLPIDADEILK 1564
Query: 62 IPIEPHANKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKGLWKDFFPHLI-DFLNSC 121
I +D + W D G+FSV SAY LA+++ D+ S ++ P I D + C
Sbjct: 1565 IRTSVRLEEDFLSWHPDRLGQFSVRSAYKLAISLDYADESSSSSGQN--PQKIWDLIWKC 1624
Query: 122 WDDWPPFV---CWNALTNHLKDADQRK--------------------------------- 181
+ P V CW A N L + + +K
Sbjct: 1625 --NVPQKVKVFCWRAANNCLANQENKKKRNLERSEICCICGNETEDVSHALSRCPHAVHL 1684
Query: 182 --------------------------------------AITIMWSLWEVKNKSLTHNLPP 241
++W +W V+N+ L H P
Sbjct: 1685 WEAMKAAGSLSLNVAGNATGGSWFFDQIENTPAEERMMLCMMLWRIWFVRNE-LYHGKVP 1744
Query: 242 NKELIAKRIETSTC----------HRDIHTPLSSVSKSSKTLASHRH--------WDPPP 262
++KR S C H D+ V + ++ + H W+ P
Sbjct: 1745 PPIAVSKRFLESYCSSLLEIKQHPHADVVRGKHVVQQPTRMRSEANHLRRVVPARWEKPQ 1804
BLAST of Tan0005760 vs. ExPASy TrEMBL
Match:
B8B9U8 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28856 PE=4 SV=1)
HSP 1 Score: 87.8 bits (216), Expect = 7.3e-14
Identity = 69/298 (23.15%), Postives = 117/298 (39.26%), Query Frame = 0
Query: 9 DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
DPW+ R+ S ++ K + + + + L+ WN E +N FL D +VI +I P
Sbjct: 838 DPWLPRDHSRWPIILKRNCRLKWFSDLLDQDGSWNAEKINRYFLKVDADVIYKICTSPRV 897
Query: 69 NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKG-----------LWKDFFPHLI--- 128
D + W D G+FSV SAY LA N++ + S +WK P +
Sbjct: 898 ECDFLAWHPDKTGQFSVRSAYALAANLANMEVPSSSSTATVNKAWDLIWKCNVPQKVRIF 957
Query: 129 -----------------------DFLNSC---WDDWPPFVCWNALTNHLKDADQRKAITI 188
D C +D +C + L D D+ +
Sbjct: 958 AWKAASNSLPTMVKKKKRNLEKTDMCPICDREKEDAGHALC-RCIHAGLSDYDRALFLMT 1017
Query: 189 MWSLWEVKNKSLTHNLPPNKELIAKRIET--STCHRDIHTPLSSVSK------------- 248
+W W V+N+ + P E + I++ T + P++ ++K
Sbjct: 1018 LWRNWHVRNEITHDKVVPPVEASQRFIQSYVDTMFQIRQDPVAKLAKGKLVLKVGNVKQH 1077
Query: 249 SSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTC 252
+ T W+ P GW KLN + ++ + + G +G +RDSSG I+ + + C
Sbjct: 1078 TQTTCKPQPRWERPSNGWMKLNIDGSFDSKTENGGIGAILRDSSGKPIFACCKPLQKC 1134
BLAST of Tan0005760 vs. TAIR 10
Match:
AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )
HSP 1 Score: 49.7 bits (117), Expect = 4.3e-06
Identity = 30/119 (25.21%), Postives = 57/119 (47.90%), Query Frame = 0
Query: 148 IMWSLWEVKN----KSLTHNLPPNKELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRH 207
++W LW+ +N K ++ P + E + R++ S + + L+
Sbjct: 80 LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASG-PQVERNLSV--Q 139
Query: 208 WDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKAI 263
W PP W K NT+ATW E + +GW +R+ SG +++G + + ++ EL+A+
Sbjct: 140 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEAL 195
BLAST of Tan0005760 vs. TAIR 10
Match:
AT2G02650.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 43.9 bits (102), Expect = 2.3e-04
Identity = 25/107 (23.36%), Postives = 47/107 (43.93%), Query Frame = 0
Query: 148 IMWSLWEVKNKSLTHNLPPNKELIAKR----------IETSTCHRDIHTPLSSVSKSSKT 207
IMW LW+ +N L + + A++ +T + ++H + + S +
Sbjct: 143 IMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRR- 202
Query: 208 LASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVG 245
W+PPP GW K N ++ + + GWT+R+ +G + G
Sbjct: 203 --DSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCG 246
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
ABB46931.2 | 3.5e-18 | 26.76 | retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] | [more] |
AAM01179.2 | 3.5e-18 | 26.76 | Putative retroelement [Oryza sativa Japonica Group] | [more] |
XP_031131710.1 | 3.0e-17 | 26.29 | uncharacterized protein LOC116033095 [Ipomoea triloba] | [more] |
XP_025877173.1 | 8.6e-17 | 22.16 | uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X... | [more] |
XP_038722039.1 | 7.3e-16 | 27.16 | uncharacterized protein LOC120014190 [Tripterygium wilfordii] | [more] |
Match Name | E-value | Identity | Description | |
Q8S5K1 | 1.7e-18 | 26.76 | Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.... | [more] |
Q33AJ4 | 1.7e-18 | 26.76 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... | [more] |
Q75M12 | 1.1e-14 | 24.72 | Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. japonica ... | [more] |
Q2QUC2 | 4.3e-14 | 22.66 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... | [more] |
B8B9U8 | 7.3e-14 | 23.15 | Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... | [more] |
Match Name | E-value | Identity | Description | |
AT2G34320.1 | 4.3e-06 | 25.21 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | [more] |
AT2G02650.1 | 2.3e-04 | 23.36 | Ribonuclease H-like superfamily protein | [more] |