Tan0005760 (gene) Snake gourd v1

Overview
NameTan0005760
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
LocationLG01: 28780641 .. 28781654 (+)
RNA-Seq ExpressionTan0005760
SyntenyTan0005760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATACAATCATCGACGAGGATCCTTGGATTGATAGGGAAGGGAGTTTCAAAGTCCTAATGACTAAGGACTCTATTAAAGGGAGGTGTGTCAATTCCCTCATCACTAATACATGCATTTGGAATCTGGAAGCTCTGAACAACAACTTCCTCCCCGCAGATGTCGAAGTAATTGCCAGAATTCCCATTGAGCCCCACGCTAACAAAGATGAAATCATTTGGGGTTTGGATCCTAAGGGTCGTTTCTCCGTTACAAGTGCCTACCACCTTGCTTTAAACATCTCCCAAAAGGATGATGTCGCCACCTCTGATCTTAAGCATCAAAAAGATGAGTGGAAAGCTTTTTGGAAGATAGATTTCATCCCACGTCATAAGATGATTGCTTGGCCTATCCTCCAAGACATCATCCTAACAAGGAAAAACCTCATGAAAAGAGGAATTGATTCTAACCCCTTGTGTTTATTTTGCAGGAAAAAGCTGGAAACTTCTATGCACATAATCTGGGGTTGTAAGTTCTCTAAAGGCCTATGGAAAGACTTTTTTCCTCATCTAATAGATTTTCTAAACTCTTGTTGGGATGATTGGCCCCCTTTTGTCTGCTGGAATGCTCTAACCAACCATCTAAAGGATGCAGATCAAAGAAAAGCCATAACAATTATGTGGAGTTTATGGGAGGTCAAAAACAAATCTCTTACACACAATCTTCCTCCCAACAAAGAGCTTATCGCTAAGAGGATAGAGACAAGTACCTGTCATCGCGATATCCACACCCCTCTCAGTTCTGTCAGCAAGTCCTCGAAGACCCTAGCGAGTCACAGGCATTGGGATCCTCCTCCGATCGGTTGGTGGAAGTTGAACACCAACGCGACCTGGTTTGAAGAAAAACAAAAAGGTAGCTTAGGTTGGACTGTCCGTGACTCTTCAGGTTCTTCGATATATGTTGGTATCCAATTGATCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTAGCTTAA

mRNA sequence

ATGAGGCATACAATCATCGACGAGGATCCTTGGATTGATAGGGAAGGGAGTTTCAAAGTCCTAATGACTAAGGACTCTATTAAAGGGAGGTGTGTCAATTCCCTCATCACTAATACATGCATTTGGAATCTGGAAGCTCTGAACAACAACTTCCTCCCCGCAGATGTCGAAGTAATTGCCAGAATTCCCATTGAGCCCCACGCTAACAAAGATGAAATCATTTGGGGTTTGGATCCTAAGGGTCGTTTCTCCGTTACAAGTGCCTACCACCTTGCTTTAAACATCTCCCAAAAGGATGATTTCTCTAAAGGCCTATGGAAAGACTTTTTTCCTCATCTAATAGATTTTCTAAACTCTTGTTGGGATGATTGGCCCCCTTTTGTCTGCTGGAATGCTCTAACCAACCATCTAAAGGATGCAGATCAAAGAAAAGCCATAACAATTATGTGGAGTTTATGGGAGGTCAAAAACAAATCTCTTACACACAATCTTCCTCCCAACAAAGAGCTTATCGCTAAGAGGATAGAGACAAGTACCTGTCATCGCGATATCCACACCCCTCTCAGTTCTGTCAGCAAGTCCTCGAAGACCCTAGCGAGTCACAGGCATTGGGATCCTCCTCCGATCGGTTGGTGGAAGTTGAACACCAACGCGACCTGGTTTGAAGAAAAACAAAAAGGTAGCTTAGGTTGGACTGTCCGTGACTCTTCAGGTTCTTCGATATATGTTGGTATCCAATTGATCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTAGCTTAA

Coding sequence (CDS)

ATGAGGCATACAATCATCGACGAGGATCCTTGGATTGATAGGGAAGGGAGTTTCAAAGTCCTAATGACTAAGGACTCTATTAAAGGGAGGTGTGTCAATTCCCTCATCACTAATACATGCATTTGGAATCTGGAAGCTCTGAACAACAACTTCCTCCCCGCAGATGTCGAAGTAATTGCCAGAATTCCCATTGAGCCCCACGCTAACAAAGATGAAATCATTTGGGGTTTGGATCCTAAGGGTCGTTTCTCCGTTACAAGTGCCTACCACCTTGCTTTAAACATCTCCCAAAAGGATGATTTCTCTAAAGGCCTATGGAAAGACTTTTTTCCTCATCTAATAGATTTTCTAAACTCTTGTTGGGATGATTGGCCCCCTTTTGTCTGCTGGAATGCTCTAACCAACCATCTAAAGGATGCAGATCAAAGAAAAGCCATAACAATTATGTGGAGTTTATGGGAGGTCAAAAACAAATCTCTTACACACAATCTTCCTCCCAACAAAGAGCTTATCGCTAAGAGGATAGAGACAAGTACCTGTCATCGCGATATCCACACCCCTCTCAGTTCTGTCAGCAAGTCCTCGAAGACCCTAGCGAGTCACAGGCATTGGGATCCTCCTCCGATCGGTTGGTGGAAGTTGAACACCAACGCGACCTGGTTTGAAGAAAAACAAAAAGGTAGCTTAGGTTGGACTGTCCGTGACTCTTCAGGTTCTTCGATATATGTTGGTATCCAATTGATCAATACCTGTTGGAGCATCAAAATTCTTGAGTTGAAAGCCATCCTCCTAGCTTAA

Protein sequence

MRHTIIDEDPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHANKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKGLWKDFFPHLIDFLNSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKAILLA
Homology
BLAST of Tan0005760 vs. NCBI nr
Match: ABB46931.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0

Query: 9    DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
            DPWI R  S + +  K + + R V+ LI  +  W+ + ++ +FLP D E I  I +    
Sbjct: 1472 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1531

Query: 69   NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
              D I W  D  GRFSV SAYHLA+ ++  D+ S             LWK   P  ++ L
Sbjct: 1532 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1591

Query: 129  NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
            ++  +  P  +    L    +  DQ   + ++W +W  +N+ + H  P    L++KR   
Sbjct: 1592 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1651

Query: 189  STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
            S          H              +   L S+ +S + +     W  P  G  KLN +
Sbjct: 1652 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1711

Query: 249  ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
             ++ E   KG +G  +R+ +G  I+     ++ C S    EL A
Sbjct: 1712 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1750

BLAST of Tan0005760 vs. NCBI nr
Match: AAM01179.2 (Putative retroelement [Oryza sativa Japonica Group])

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0

Query: 9    DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
            DPWI R  S + +  K + + R V+ LI  +  W+ + ++ +FLP D E I  I +    
Sbjct: 1507 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1566

Query: 69   NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
              D I W  D  GRFSV SAYHLA+ ++  D+ S             LWK   P  ++ L
Sbjct: 1567 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1626

Query: 129  NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
            ++  +  P  +    L    +  DQ   + ++W +W  +N+ + H  P    L++KR   
Sbjct: 1627 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1686

Query: 189  STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
            S          H              +   L S+ +S + +     W  P  G  KLN +
Sbjct: 1687 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1746

Query: 249  ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
             ++ E   KG +G  +R+ +G  I+     ++ C S    EL A
Sbjct: 1747 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1785

BLAST of Tan0005760 vs. NCBI nr
Match: XP_031131710.1 (uncharacterized protein LOC116033095 [Ipomoea triloba])

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-17
Identity = 66/251 (26.29%), Postives = 119/251 (47.41%), Query Frame = 0

Query: 8    EDPWI-DREGSFKVLMTKDSIKGRCVNSLI-TNTCIWNLEALNNNFLPADVEVIARIPIE 67
            EDPW+ D++  F        +    V+SL+ T    W+ E L++ FL  D E I RIPI 
Sbjct: 774  EDPWLPDQQSHFVQTPEPIYLHDAKVSSLLNTQGYNWDTEILDDLFLANDKEQILRIPIP 833

Query: 68   PHANKDEIIWGLDPKGRFSVTSAYHLALN--ISQKDDFSKGLWKDFFP----HLIDFLNS 127
               + D++IW  +  G+F+V+S Y   +    +Q+D      WK   P    + + F   
Sbjct: 834  SLPHDDKLIWCREENGKFTVSSCYRKLVGEMDAQEDASRTQFWKLPIPPKVKNFLCFTKD 893

Query: 128  CW--------DDWPPFVCWNALTNHLKDADQRKAITIM---WSLWEVKNKSLTHNLPPNK 187
            CW        ++   F  W  ++N++K  D      ++   W +WE +N  +  N PPN 
Sbjct: 894  CWRKLNILNVNNANQFHNW--ISNNMKAPDSNLLCLLLVTCWKIWETRNHKVWSNSPPNY 953

Query: 188  ELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGS 240
             ++   ++ +    +  + +  V+  ++    +  W  PP+GW K+N +A  + E    S
Sbjct: 954  VVV---VDGARGFLNAWSNMQIVNLKTENCLHNSRWQKPPLGWTKMNVDAACYNELCITS 1013

BLAST of Tan0005760 vs. NCBI nr
Match: XP_025877173.1 (uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877174.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877175.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877176.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877177.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877178.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877179.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >XP_025877180.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group])

HSP 1 Score: 98.6 bits (244), Expect = 8.6e-17
Identity = 78/352 (22.16%), Postives = 137/352 (38.92%), Query Frame = 0

Query: 9   DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
           DPWI R+ S + +  + + + + V+ LI     W++  +   FL  D E+I  I + P  
Sbjct: 36  DPWIPRDHSRRPVTMRGNCRLKWVSDLIGQDGTWDVAQIRRCFLNIDTELILSICLSPRQ 95

Query: 69  NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKG-----------LWKDFFPHLI--- 128
            +D + W LD  GRFSV SAY+LA  ++  +  S             +WK   P  I   
Sbjct: 96  EEDFLAWHLDKFGRFSVRSAYNLACRLANTEGSSSSSALHSRKSWDLIWKCKLPQKIKIF 155

Query: 129 ------------------------------------------------------------ 188
                                                                       
Sbjct: 156 AWKVASNCLATMDNKRKRKLVNSDICIICNREVENSVHALCKCPRASALLSDMVQSGNLS 215

Query: 189 -DFLNSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAK 248
            D +N  + ++  F C      +L   +    +  +W  W V+N+ +THN PP    ++K
Sbjct: 216 LDLVNFQFGNYWLFDC----LEYLPTEEHEMFLLTLWRNWYVRNE-ITHNKPPPPLEVSK 275

Query: 249 RIETSTC----------HRDIHTPLSSVSKS------------SKTLASHRHWDPPPIGW 264
           R   S            H D+    + VS+S              T ++  HW+ P +GW
Sbjct: 276 RFLESYIATLFQIREYPHADLEKGKTVVSRSVISALRRRGPDGPPTASTRLHWEKPRLGW 335

BLAST of Tan0005760 vs. NCBI nr
Match: XP_038722039.1 (uncharacterized protein LOC120014190 [Tripterygium wilfordii])

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-16
Identity = 66/243 (27.16%), Postives = 103/243 (42.39%), Query Frame = 0

Query: 9   DPWIDREGSFKVL--MTKDSIKGRCVNSLITN-TCIWNLEALNNNFLPADVEVIARIPIE 68
           D W+ R  +FK +  +  D IKG  V SLI   T  W+++ + N+F+P+DVE+I  IPI 
Sbjct: 328 DTWLPRPVTFKPISWLPDDIIKGAPVASLINQATHSWDIDRVQNSFIPSDVELILSIPIS 387

Query: 69  PHANKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKGLWKDFFPHLIDFLNSCWDDWP 128
           P    D I+W  D KGRFS+ S YH+A  +  K + S G                  D P
Sbjct: 388 PFRAVDHILWHWDSKGRFSIKSTYHVAQGL--KAEISVG------------------DLP 447

Query: 129 PFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIETSTCHRDIH 188
           P +    L  H   +     I   W +W  +N  L +    +       + +        
Sbjct: 448 PLIYAPILGLHQPPSKACLFICSAWVIWNNQNNFLHNQRSRDAAETMSFVCSYVQELSAL 507

Query: 189 TPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGI 248
              +S+   ++       W PP +  +KLN +   F   Q   +G  +RD  G      +
Sbjct: 508 ATRASLPTQARVPTQSGCWQPPSLNGFKLNVDGAVFAADQSIGIGGVLRDHKGEVFMSFV 550

BLAST of Tan0005760 vs. ExPASy TrEMBL
Match: Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0

Query: 9    DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
            DPWI R  S + +  K + + R V+ LI  +  W+ + ++ +FLP D E I  I +    
Sbjct: 1507 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1566

Query: 69   NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
              D I W  D  GRFSV SAYHLA+ ++  D+ S             LWK   P  ++ L
Sbjct: 1567 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1626

Query: 129  NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
            ++  +  P  +    L    +  DQ   + ++W +W  +N+ + H  P    L++KR   
Sbjct: 1627 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1686

Query: 189  STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
            S          H              +   L S+ +S + +     W  P  G  KLN +
Sbjct: 1687 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1746

Query: 249  ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
             ++ E   KG +G  +R+ +G  I+     ++ C S    EL A
Sbjct: 1747 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1785

BLAST of Tan0005760 vs. ExPASy TrEMBL
Match: Q33AJ4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g09610 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-18
Identity = 76/284 (26.76%), Postives = 123/284 (43.31%), Query Frame = 0

Query: 9    DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
            DPWI R  S + +  K + + R V+ LI  +  W+ + ++ +FLP D E I  I +    
Sbjct: 1472 DPWIPRSYSRRPISAKRNCRLRWVSDLIDQSGSWDTDKISQHFLPMDAEAILNIRLSSRL 1531

Query: 69   NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFS-----------KGLWKDFFPHLIDFL 128
              D I W  D  GRFSV SAYHLA+ ++  D+ S             LWK   P  ++ L
Sbjct: 1532 EDDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPL 1591

Query: 129  NSCWDDWPPFVCWNALTNHLKDADQRKAITIMWSLWEVKNKSLTHNLPPNKELIAKRIET 188
            ++  +  P  +    L    +  DQ   + ++W +W  +N+ + H  P    L++KR   
Sbjct: 1592 SNIRNGDPKVIL--DLLEQSQPEDQVMLLMVLWRIWHTRNE-IVHGKPAPGMLVSKRFIE 1651

Query: 189  STC--------HRD------------IHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTN 248
            S          H              +   L S+ +S + +     W  P  G  KLN +
Sbjct: 1652 SYVLSLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPD--KWLKPLPGSMKLNVD 1711

Query: 249  ATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKA 262
             ++ E   KG +G  +R+ +G  I+     ++ C S    EL A
Sbjct: 1712 GSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCCSSALETELLA 1750

BLAST of Tan0005760 vs. ExPASy TrEMBL
Match: Q75M12 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=P0431G05.11 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 67/271 (24.72%), Postives = 114/271 (42.07%), Query Frame = 0

Query: 9    DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
            DPWI R+ S + + +K + + + V+ LI     W+   +N  FL  D ++I +I I    
Sbjct: 1577 DPWIPRDLSRRPVSSKANCRLKWVSDLIAEDGTWDSAKINQYFLKIDADIIQKICISARL 1636

Query: 69   NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKG-----------LWKDFFPHLIDFL 128
             +D I W  D  GRFSV SAY LAL ++  ++ S             +WK   P  +   
Sbjct: 1637 EEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIF 1696

Query: 129  NSCWDDWPPFVCWNALTNHLKDADQRKAITI----MWSLWE-------------VKNKSL 188
                        W   +N L   + +K   +    +  + +             V   SL
Sbjct: 1697 -----------AWRVASNSLATMENKKKRNLERFDVCGICDREKEDAGHALCRCVHANSL 1756

Query: 189  THNLPPNKELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRHWDPPPIGWWKLNTNATW 248
              NL   K +++     +T  +  HTP           A +R W+ P  GW KLN + ++
Sbjct: 1757 WVNLEKGKYVVSVNFPKTTAIK--HTP----------GAENRRWERPRNGWMKLNVDGSF 1816

Query: 249  FEEKQKGSLGWTVRDSSGSSIYVGIQLINTC 252
                +KG +G  +R+  G+ I+   + +++C
Sbjct: 1817 DINSEKGGIGMILRNCLGNVIFSSCRSLDSC 1824

BLAST of Tan0005760 vs. ExPASy TrEMBL
Match: Q2QUC2 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g16750 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.3e-14
Identity = 80/353 (22.66%), Postives = 131/353 (37.11%), Query Frame = 0

Query: 2    RHTIIDEDPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIAR 61
            R   I  DPWI R+ S + + TK + + + V+ L+     W+++ ++  FLP D + I +
Sbjct: 1505 RSVRIWRDPWIPRDHSCRPITTKRNCRVKWVSDLLGQDGSWDVQKVSRVFLPIDADEILK 1564

Query: 62   IPIEPHANKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKGLWKDFFPHLI-DFLNSC 121
            I       +D + W  D  G+FSV SAY LA+++   D+ S    ++  P  I D +  C
Sbjct: 1565 IRTSVRLEEDFLSWHPDRLGQFSVRSAYKLAISLDYADESSSSSGQN--PQKIWDLIWKC 1624

Query: 122  WDDWPPFV---CWNALTNHLKDADQRK--------------------------------- 181
              + P  V   CW A  N L + + +K                                 
Sbjct: 1625 --NVPQKVKVFCWRAANNCLANQENKKKRNLERSEICCICGNETEDVSHALSRCPHAVHL 1684

Query: 182  --------------------------------------AITIMWSLWEVKNKSLTHNLPP 241
                                                     ++W +W V+N+ L H   P
Sbjct: 1685 WEAMKAAGSLSLNVAGNATGGSWFFDQIENTPAEERMMLCMMLWRIWFVRNE-LYHGKVP 1744

Query: 242  NKELIAKRIETSTC----------HRDIHTPLSSVSKSSKTLASHRH--------WDPPP 262
                ++KR   S C          H D+      V + ++  +   H        W+ P 
Sbjct: 1745 PPIAVSKRFLESYCSSLLEIKQHPHADVVRGKHVVQQPTRMRSEANHLRRVVPARWEKPQ 1804

BLAST of Tan0005760 vs. ExPASy TrEMBL
Match: B8B9U8 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_28856 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.3e-14
Identity = 69/298 (23.15%), Postives = 117/298 (39.26%), Query Frame = 0

Query: 9    DPWIDREGSFKVLMTKDSIKGRCVNSLITNTCIWNLEALNNNFLPADVEVIARIPIEPHA 68
            DPW+ R+ S   ++ K + + +  + L+     WN E +N  FL  D +VI +I   P  
Sbjct: 838  DPWLPRDHSRWPIILKRNCRLKWFSDLLDQDGSWNAEKINRYFLKVDADVIYKICTSPRV 897

Query: 69   NKDEIIWGLDPKGRFSVTSAYHLALNISQKDDFSKG-----------LWKDFFPHLI--- 128
              D + W  D  G+FSV SAY LA N++  +  S             +WK   P  +   
Sbjct: 898  ECDFLAWHPDKTGQFSVRSAYALAANLANMEVPSSSSTATVNKAWDLIWKCNVPQKVRIF 957

Query: 129  -----------------------DFLNSC---WDDWPPFVCWNALTNHLKDADQRKAITI 188
                                   D    C    +D    +C   +   L D D+   +  
Sbjct: 958  AWKAASNSLPTMVKKKKRNLEKTDMCPICDREKEDAGHALC-RCIHAGLSDYDRALFLMT 1017

Query: 189  MWSLWEVKNKSLTHNLPPNKELIAKRIET--STCHRDIHTPLSSVSK------------- 248
            +W  W V+N+     + P  E   + I++   T  +    P++ ++K             
Sbjct: 1018 LWRNWHVRNEITHDKVVPPVEASQRFIQSYVDTMFQIRQDPVAKLAKGKLVLKVGNVKQH 1077

Query: 249  SSKTLASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTC 252
            +  T      W+ P  GW KLN + ++  + + G +G  +RDSSG  I+   + +  C
Sbjct: 1078 TQTTCKPQPRWERPSNGWMKLNIDGSFDSKTENGGIGAILRDSSGKPIFACCKPLQKC 1134

BLAST of Tan0005760 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 4.3e-06
Identity = 30/119 (25.21%), Postives = 57/119 (47.90%), Query Frame = 0

Query: 148 IMWSLWEVKN----KSLTHNLPPNKELIAKRIETSTCHRDIHTPLSSVSKSSKTLASHRH 207
           ++W LW+ +N    K   ++ P       +  E  +  R++    S   +  + L+    
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASG-PQVERNLSV--Q 139

Query: 208 WDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVGIQLINTCWSIKILELKAI 263
           W  PP  W K NT+ATW  E  +  +GW +R+ SG  +++G + +    ++   EL+A+
Sbjct: 140 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEAL 195

BLAST of Tan0005760 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.3e-04
Identity = 25/107 (23.36%), Postives = 47/107 (43.93%), Query Frame = 0

Query: 148 IMWSLWEVKNKSLTHNLPPNKELIAKR----------IETSTCHRDIHTPLSSVSKSSKT 207
           IMW LW+ +N  L      + +  A++             +T + ++H   + +  S + 
Sbjct: 143 IMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRR- 202

Query: 208 LASHRHWDPPPIGWWKLNTNATWFEEKQKGSLGWTVRDSSGSSIYVG 245
                 W+PPP GW K N ++ + +       GWT+R+ +G  +  G
Sbjct: 203 --DSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCG 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
ABB46931.23.5e-1826.76retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group][more]
AAM01179.23.5e-1826.76Putative retroelement [Oryza sativa Japonica Group][more]
XP_031131710.13.0e-1726.29uncharacterized protein LOC116033095 [Ipomoea triloba][more]
XP_025877173.18.6e-1722.16uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group] >X... [more]
XP_038722039.17.3e-1627.16uncharacterized protein LOC120014190 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
Q8S5K11.7e-1826.76Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.... [more]
Q33AJ41.7e-1826.76Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
Q75M121.1e-1424.72Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. japonica ... [more]
Q2QUC24.3e-1422.66Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... [more]
B8B9U87.3e-1423.15Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
Match NameE-valueIdentityDescription
AT2G34320.14.3e-0625.21Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT2G02650.12.3e-0423.36Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005760.1Tan0005760.1mRNA