Tan0005746 (gene) Snake gourd v1

Overview
NameTan0005746
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUvrABC system protein A
LocationLG10: 2048935 .. 2051201 (-)
RNA-Seq ExpressionTan0005746
SyntenyTan0005746
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCACACAAGTTATGTTCTCTAACTTGTTCATAACTTGTTAAAATATATATTTTCAATCTACAAGTTTAAATTTCGTGTATGAACGGAAAAGAAATTGTAATTTAATCCTTTGATATGCTAAATAGATTAACCGTAAGGCGGTTTATGGCAATCCACCACCAAACGCTCCCAAATGAGACCAGAAGAATAATTTAAAAGGAAATTCGTAAATTTCCAGTGGTTTCTCATAATCCAAACTTAGAGCATTATCGTCTTCGTTCCAGCGGTTGATTTCGAAATTGAGAGATCGAAGCGATAGAGGGAACAGAAATGGTGAATCCGCGAACAGATAAGTTGCTGAGAAGAACAACTATGGTGGCCACCGTCACCGCTTCATACTTTCTCTTAACCGCGGATTATGGTCCTCAACCCAATTTTATCGACCCCGTGAGTCATCTGAACATATCTCCCTGAAAATTTTTATTATCTGTTTGGTTGCTGAGAAAATCCTCGGAAAAAGCAGTAGGATCTTGGATTTTAAGTCGGTTAGTTTCTATGCTGATCGTCTTTTCCGTTTTAGCAATCCAGGGATCGTTATTGTGCAAGTTTAACGCGGATTTGTTATATGATTTTTTTTTGTATGTTTTTTTTTTCTAATGAGATCTTTGTTTCTCCGTTAGATTCCTTTATCTAGTCATTGATCGAGTTCATCTTATCAGTATTCTTCTCTAGCGAAAAACGAATTACGTTTCCTGTGGCTTCTTTTTAATCGATTTCGTATTTTCTTTATGCAAGTTGTACTGGTTTAGTTCAAGTTTTGTGGCACTTTGATTTCAATCGTATTTTACTGTCAGTTATCGTTCTTAATTTTTGTTAACAGTGTCTAATATAAGTCATTGTACATTTCGTTTTTTACTTGCTTTTAGTGTGTAGAACTTAGGTTTTCTACATTCTTTATCGGTCCTGTTTTCCTCCCTTAAAAACGAGATTGATCATTGGTTAACACGGTCTGTATTTAGGTAATGAAATTAGCATCTATTGTGGTGTAAATTTGTTGAGGCCTTAACTCTTCACTGCACTAAGCTTAAATTAGATGAAAATTTTCCTTTTAATGAAATTAGCATCTATTGTGGTGTAAATTTGTCTAATCGCTCATGATCCCTTGCTATTGCAGTGAGATATGAGAACTAAGAGCAATTGCTATTGCAGTGAGAAATGAGAACTAAGTGCAAAGAGTGAAGTTTCCATTTCTATTCAGTTAGAAGCAAGAAGACTTATCATTTAACAAATTATTTATTTATTTATTTTGATAACTGGTCGGAGTTTTTTCTCCCCTATACCCGATGGCACCCGCACCCAATCCAAAGCCTGGACCCGGGAGACGTTAAGGGTTTTTATCTATTAAGCTCACTCGAGGGCTTGAACCTATGACCTCTAAGTTAGTATGACCAAGAGACCCAAAGCCTTTATCAATGGGGCTGCCCCTTGGGGCAGGATTTAGCAAATTAACACTATTAGTTTATGTGAGAAGTTAACATAGTTCTACTTCTACGTTATAGTAAACAACTGGAAAGCTTTCTGATATTTCAGTTATTTACTACATTGGAAAACCTTAGGCTGCTGTGAAGTGAATCTTCATAGATGAAGAATTTCAATTCAGTGATCTACTGGTTTTTATATGCTTGATTGGCGTTTGATAAAATTTCCATCTTTATAGAAGATATACATGTTGTTTTGAATTCTAATGGCATAATTTGGGATGGCAGATCAAAAAGTTTATACTGTCAGCTGAAAGTTCTATTAAGGGTTACATATTTGGATCGAATAATCAATCTCAAGAAAGTCAGAGAGAGAAGCTCGGCTCCAATGGTGGAAAGGACCATCCATAGTATGTAGACTCGAGTATTTAGTTACGGTTTTACGTGTGTATATATATTTCTTGAGTCTGCATTTCTTCCTTATACATTTCCTAAAGCTTAGGTTGAGATAAAGCATGAGTAGACCTTTTGGAGGAGTTAAATAGTGCAGTTTGTTAGATGCTGAGATGTTTAATGAATTGGTTATTGCCCATTTAGCATATTAACTTCAGAGATTCGAATTACTTACCTACGGTATATTTTGGATTAGTTTTGGTTTCATTTTCTTCTTTTGATTACCTGGGAAGTCATCTGAAATTATAGGGAGTGCTTAATGAGAGATCATCTGTAGTTATTCTAAACTCCTGTAAAAAAATGAACATAGTTTTGATTTGGGAGTTTTACTTACATTTGAATATCTCCTAGCTGG

mRNA sequence

AATCACACAAGTTATGTTCTCTAACTTGTTCATAACTTGTTAAAATATATATTTTCAATCTACAAGTTTAAATTTCGTGTATGAACGGAAAAGAAATTGTAATTTAATCCTTTGATATGCTAAATAGATTAACCGTAAGGCGGTTTATGGCAATCCACCACCAAACGCTCCCAAATGAGACCAGAAGAATAATTTAAAAGGAAATTCGTAAATTTCCAGTGGTTTCTCATAATCCAAACTTAGAGCATTATCGTCTTCGTTCCAGCGGTTGATTTCGAAATTGAGAGATCGAAGCGATAGAGGGAACAGAAATGGTGAATCCGCGAACAGATAAGTTGCTGAGAAGAACAACTATGGTGGCCACCGTCACCGCTTCATACTTTCTCTTAACCGCGGATTATGGTCCTCAACCCAATTTTATCGACCCCATCAAAAAGTTTATACTGTCAGCTGAAAGTTCTATTAAGGGTTACATATTTGGATCGAATAATCAATCTCAAGAAAGTCAGAGAGAGAAGCTCGGCTCCAATGGTGGAAAGGACCATCCATAGTATGTAGACTCGAGTATTTAGTTACGGTTTTACGTGTGTATATATATTTCTTGAGTCTGCATTTCTTCCTTATACATTTCCTAAAGCTTAGGTTGAGATAAAGCATGAGTAGACCTTTTGGAGGAGTTAAATAGTGCAGTTTGTTAGATGCTGAGATGTTTAATGAATTGGTTATTGCCCATTTAGCATATTAACTTCAGAGATTCGAATTACTTACCTACGGTATATTTTGGATTAGTTTTGGTTTCATTTTCTTCTTTTGATTACCTGGGAAGTCATCTGAAATTATAGGGAGTGCTTAATGAGAGATCATCTGTAGTTATTCTAAACTCCTGTAAAAAAATGAACATAGTTTTGATTTGGGAGTTTTACTTACATTTGAATATCTCCTAGCTGG

Coding sequence (CDS)

ATGGTGAATCCGCGAACAGATAAGTTGCTGAGAAGAACAACTATGGTGGCCACCGTCACCGCTTCATACTTTCTCTTAACCGCGGATTATGGTCCTCAACCCAATTTTATCGACCCCATCAAAAAGTTTATACTGTCAGCTGAAAGTTCTATTAAGGGTTACATATTTGGATCGAATAATCAATCTCAAGAAAGTCAGAGAGAGAAGCTCGGCTCCAATGGTGGAAAGGACCATCCATAG

Protein sequence

MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNNQSQESQREKLGSNGGKDHP
Homology
[Close]
BLAST of Tan0005746 vs. NCBI nr
Match: XP_022147242.1 (uncharacterized protein LOC111016239 [Momordica charantia])

HSP 1 Score: 146.7 bits (369), Expect = 8.2e-32
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DPI+KFILSAESS+KG+IFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDHP 80
          QSQESQREKLGSNG KD P
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

[Close]
BLAST of Tan0005746 vs. NCBI nr
Match: XP_022924545.1 (uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 uncharacterized protein LOC111479819 [Cucurbita maxima] >XP_023529151.1 uncharacterized protein LOC111791881 [Cucurbita pepo subsp. pepo] >KAG6582608.1 hypothetical protein SDJN03_22610, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018999.1 hypothetical protein SDJN02_20876 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DPIKKFILS ESSIKG+IFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDHP 80
          QSQ SQ EKLGSNG KD+P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of Tan0005746 vs. NCBI nr
Match: XP_008438057.1 (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DP+KK ILSAESSIKG+IFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDH 79
          QSQE QREKLGSNG KD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Tan0005746 vs. NCBI nr
Match: XP_011650756.1 (uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical protein Csa_010552 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DP+KK ILSAESSIKG+IFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDH 79
          QSQE QREKLGSNG KD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Tan0005746 vs. NCBI nr
Match: XP_038906565.1 (uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906569.1 uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906579.1 uncharacterized protein LOC120092525 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29
Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DPIKKFILSAESS+KG+IFGSN 
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSMKGFIFGSNK 60

Query: 61 QSQESQREKLGSNGGKDHP 80
           SQESQ EKLGSNG KD+P
Sbjct: 61 HSQESQTEKLGSNGVKDNP 79

[Close]
BLAST of Tan0005746 vs. ExPASy TrEMBL
Match: A0A6J1D1U5 (uncharacterized protein LOC111016239 OS=Momordica charantia OX=3673 GN=LOC111016239 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DPI+KFILSAESS+KG+IFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDHP 80
          QSQESQREKLGSNG KD P
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

[Close]
BLAST of Tan0005746 vs. ExPASy TrEMBL
Match: A0A6J1IWD0 (uncharacterized protein LOC111479819 OS=Cucurbita maxima OX=3661 GN=LOC111479819 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.5e-31
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DPIKKFILS ESSIKG+IFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDHP 80
          QSQ SQ EKLGSNG KD+P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of Tan0005746 vs. ExPASy TrEMBL
Match: A0A6J1EFB9 (uncharacterized protein LOC111431996 OS=Cucurbita moschata OX=3662 GN=LOC111431996 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.5e-31
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DPIKKFILS ESSIKG+IFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDHP 80
          QSQ SQ EKLGSNG KD+P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of Tan0005746 vs. ExPASy TrEMBL
Match: A0A1S3AW35 (uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.3e-30
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DP+KK ILSAESSIKG+IFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDH 79
          QSQE QREKLGSNG KD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Tan0005746 vs. ExPASy TrEMBL
Match: A0A0A0L7H0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNF+DP+KK ILSAESSIKG+IFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGGKDH 79
          QSQE QREKLGSNG KD+
Sbjct: 61 QSQEGQREKLGSNGVKDN 78

[Close]
BLAST of Tan0005746 vs. TAIR 10
Match: AT4G00530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-17
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLT DYGP+PN +DPIK+ IL+A+ S+K +IFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]
BLAST of Tan0005746 vs. TAIR 10
Match: AT1G01725.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00530.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFIDPIKKFILSAESSIKGYIFGSNNQ 61
          +NP+ +K+++ T++VAT   SYFLLTADYGP+PN +DPI++ ILSA+ S+K +IF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

The following BLAST results are available for this feature:
BLAST of Tan0005746 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0005746 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147242.18.2e-3292.41uncharacterized protein LOC111016239 [Momordica charantia][more]
XP_022924545.11.5e-3091.14uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 unchar... [more]
XP_008438057.11.7e-2989.74PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
XP_011650756.12.2e-2989.74uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical ... [more]
XP_038906565.12.9e-2988.61uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906569.1 unchara... [more]
BLAST of Tan0005746 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D1U54.0e-3292.41uncharacterized protein LOC111016239 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1IWD07.5e-3191.14uncharacterized protein LOC111479819 OS=Cucurbita maxima OX=3661 GN=LOC111479819... [more]
A0A6J1EFB97.5e-3191.14uncharacterized protein LOC111431996 OS=Cucurbita moschata OX=3662 GN=LOC1114319... [more]
A0A1S3AW358.3e-3089.74uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=... [more]
A0A0A0L7H01.1e-2989.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1[more]
BLAST of Tan0005746 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00530.11.2e-1763.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G01725.11.8e-1351.61unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..79
NoneNo IPR availablePANTHERPTHR37696ADENYLOSUCCINATE SYNTHETASE-RELATEDcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005746.1Tan0005746.1mRNA