Tan0005740 (gene) Snake gourd v1

Overview


Name	Tan0005740
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L23, chloroplastic
Location	LG11: 6533958 .. 6535622 (+)
RNA-Seq Expression	Tan0005740
Synteny	Tan0005740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGTTCTACAAAAACCCTAATATATAAGCCGCATCGTCTTCTCCCCTGCGGAAACCTAGCCTTCCCGATAGCAGCTGTTCGTCTGGGTAAGAAGATCTTTTATCTGTTTCACTTCCTCTCAAACTTTCAATGGCTGAATATTTTTTCTTAGGGTTTACATTCGTTACCATTAGTTTGATCCGTACGCATAGTCTGAGTTTCGTTCGTTTTTCACTTGGAAATTCGTCGAGATTTCTTCACTCATTGATATCTATGTCAACCCTCAACAGGTCGGAGTAGCGATTAGGTAGAGGAATCTGCAATGGCTCCAAAAGGTAAGTTTGTTGATTGCGTTCTTTATAAATTTGTGCGTCTATAGTTGCATAGCAACTTCACATTCTTTTCCGTGCTATTTCATTTCTCATTATTGCCGTTCGATCACTCACGATTTGGTTCTTTCGACCCCTATGTTTAAAACCAACGGAGTCTATAATTTCAGCGAAGCAGTTATAATGGCAGGAACAAATAATAAGATCTGAATCATCTGTTTAATTCTGAAATAGTATTGTTTTTAGATGTGGTTCCATTGGATAACGATTTTCTCTATCTTATGCATCTAAGATTGAATTCAAGAACACCCTCCTATGAACTTGGACAATTGATTAGTCTTAAGTGATTAAAATATAAATCAGGCTTGATACTTTTCTTTTCCCTCAGCTGACAGCACCAAGAAGGCTGACCCTAAGGCTCAAGCCTTGAAAACTGCAAAGGCAGTAAAATCAGGTCCTACATTCAAGAAGAAAGCAAAGAAAATCAGGACATCTGTCACATTTCACCGTCCGAAGACATTGAAGAAGGAAAGAAATCCTAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAATTGGACCAGTATCAGATTCTTAAATATCCCTTGACTACTGAGTCTGCAATGAAGAAGATTGAGGACAATAACACTTTGGTTTTCATTGTGGACATTCGGGCTGATAAGAAAAAGATCAAGGATGCCGTGAAAAAGATGTATGATATCCAGACCAAAAAAGTGAACACGTTGATCAGGTAAAATCTTAATCAAGCATTCCTGTAGAGTATTGTGTTGGGTTGTTCTCAGACATGATCTTAATCTTATTTTATTTTGTGAAAATTGCTTGAGTTCGAACAATGGAAATGATTACGCAGGCTTATTTAATCGAGCACTGTGATGATGATCATACAATGTTAATTTATATCACGGTTTTATGCTTATCTACTGCACCATTTTACACATCCTGATAACGTGTTTTATACATTACAACAATTGCAGGCCTGATGGAACCAAGAAGGCATACGTTAGGCTGACTCCTGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAAGACATAAGCGTTCGTGTTTGTTTGAGAAAATTGATTCTCTTTCTGCTATGACAATTTTGATTTATGGAATGACCTCTATTTTCTCTAGCAAAATTACTAAGTTGTTTTTCACTAAGCTGTTGCATTGCTTTGCTTGCTGACTTGAATAGGGTTTGTCCTCGAATGTTTTAGTAGTCTGCATTTCTTGAGCTTAACCTATTTTACTCCGGTCCGCTTTCGATCTGAAGAATTTTAACCCAACTTTCCTGGATTTCTAGTCATAACCATAAATTTTC

mRNA sequence

TCTGTTCTACAAAAACCCTAATATATAAGCCGCATCGTCTTCTCCCCTGCGGAAACCTAGCCTTCCCGATAGCAGCTGTTCGTCTGGGTCGGAGTAGCGATTAGGTAGAGGAATCTGCAATGGCTCCAAAAGCTGACAGCACCAAGAAGGCTGACCCTAAGGCTCAAGCCTTGAAAACTGCAAAGGCAGTAAAATCAGGTCCTACATTCAAGAAGAAAGCAAAGAAAATCAGGACATCTGTCACATTTCACCGTCCGAAGACATTGAAGAAGGAAAGAAATCCTAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAATTGGACCAGTATCAGATTCTTAAATATCCCTTGACTACTGAGTCTGCAATGAAGAAGATTGAGGACAATAACACTTTGGTTTTCATTGTGGACATTCGGGCTGATAAGAAAAAGATCAAGGATGCCGTGAAAAAGATGTATGATATCCAGACCAAAAAAGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATACGTTAGGCTGACTCCTGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAAGACATAAGCGTTCGTGTTTGTTTGAGAAAATTGATTCTCTTTCTGCTATGACAATTTTGATTTATGGAATGACCTCTATTTTCTCTAGCAAAATTACTAAGTTGTTTTTCACTAAGCTGTTGCATTGCTTTGCTTGCTGACTTGAATAGGGTTTGTCCTCGAATGTTTTAGTAGTCTGCATTTCTTGAGCTTAACCTATTTTACTCCGGTCCGCTTTCGATCTGAAGAATTTTAACCCAACTTTCCTGGATTTCTAGTCATAACCATAAATTTTC

Coding sequence (CDS)

ATGGCTCCAAAAGCTGACAGCACCAAGAAGGCTGACCCTAAGGCTCAAGCCTTGAAAACTGCAAAGGCAGTAAAATCAGGTCCTACATTCAAGAAGAAAGCAAAGAAAATCAGGACATCTGTCACATTTCACCGTCCGAAGACATTGAAGAAGGAAAGAAATCCTAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAATTGGACCAGTATCAGATTCTTAAATATCCCTTGACTACTGAGTCTGCAATGAAGAAGATTGAGGACAATAACACTTTGGTTTTCATTGTGGACATTCGGGCTGATAAGAAAAAGATCAAGGATGCCGTGAAAAAGATGTATGATATCCAGACCAAAAAAGTGAACACGTTGATCAGGCCTGATGGAACCAAGAAGGCATACGTTAGGCTGACTCCTGATTACGATGCTTTGGATGTTGCAAACAAGATCGGAATCATCTAA

Protein sequence

MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of Tan0005740 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-67
Identity = 140/154 (90.91%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL K+RNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-67
Identity = 138/154 (89.61%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           MAP KAD +KK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKK+RNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 9.3e-67
Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-66
Identity = 138/154 (89.61%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           MAP A   KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKK+RNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of Tan0005740 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.0e-65
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. NCBI nr
Match: XP_008463516.1 (PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal protein L23a [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 9.8e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. NCBI nr
Match: XP_022154290.1 (60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal protein L23a [Momordica charantia])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. NCBI nr
Match: XP_022993268.1 (60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal protein L23a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. NCBI nr
Match: XP_022939581.1 (60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016253.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADS+KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. ExPASy TrEMBL
Match: A0A1S3CJE6 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.1e-74
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD+TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. ExPASy TrEMBL
Match: A0A6J1K1Q8 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489334 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.1e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADITKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. ExPASy TrEMBL
Match: A0A6J1FGB6 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445434 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.1e-74
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60
           MAPKAD TKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI
Sbjct: 1   MAPKADLTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Tan0005740 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 254.2 bits (648), Expect = 6.6e-68
Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 254.2 bits (648), Expect = 6.6e-68
Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D+TKKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 250.8 bits (639), Expect = 7.3e-67
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 250.8 bits (639), Expect = 7.3e-67
Identity = 137/154 (88.96%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Tan0005740 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-63
Identity = 133/154 (86.36%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MAP-KADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPR 60
           M+P K D TKKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of Tan0005740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT35	1.4e-67	90.91	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q07761	5.4e-67	89.61	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	9.3e-67	89.61	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
O22644	6.0e-66	89.61	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q9M3C3	1.0e-65	88.96	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of Tan0005740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463516.1	9.8e-74	99.35	PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >TYK05769.1 60S ribosomal p...	[more]
XP_022154290.1	1.7e-73	98.69	60S ribosomal protein L23a [Momordica charantia] >XP_022154291.1 60S ribosomal p...	[more]
XP_022993268.1	1.7e-73	99.35	60S ribosomal protein L23a-like [Cucurbita maxima] >XP_023551144.1 60S ribosomal...	[more]
XP_022939581.1	1.7e-73	99.35	60S ribosomal protein L23a [Cucurbita moschata] >KAG6578722.1 60S ribosomal prot...	[more]
XP_022995723.1	2.2e-73	98.69	60S ribosomal protein L23a [Cucurbita maxima]	[more]

BLAST of Tan0005740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5W3	4.8e-74	99.35	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CJE6	4.8e-74	99.35	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501656...	[more]
A0A6J1DJ76	8.1e-74	98.69	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1K1Q8	8.1e-74	99.35	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FGB6	8.1e-74	99.35	50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of Tan0005740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	6.6e-68	89.61	ribosomal protein L23AA	[more]
AT2G39460.2	6.6e-68	89.61	ribosomal protein L23AA	[more]
AT3G55280.1	7.3e-67	88.96	ribosomal protein L23AB	[more]
AT3G55280.2	7.3e-67	88.96	ribosomal protein L23AB	[more]
AT3G55280.3	1.7e-63	86.36	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..153 e-value: 3.8E-53 score: 180.7
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 73..135 e-value: 1.6E-14 score: 54.0
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..153
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 73..153 score: 22.356056
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..62 e-value: 2.2E-18 score: 66.2
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 77..153 e-value: 5.0E-29 score: 98.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 1..153
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 131..146
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005740.1	Tan0005740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome