Tan0005736 (gene) Snake gourd v1

Overview


Name	Tan0005736
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transpos_assoc domain-containing protein
Location	LG01: 68129660 .. 68130014 (+)
RNA-Seq Expression	Tan0005736
Synteny	Tan0005736

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGACAAGGAATGGATACATCTACATAGGTTCAAAATTTATTATTTAATTGAAGTATCAATGAATTAGTAATAATTTATCATGTTTACATACTGACTTTTTCACCTTAAAATTGAGAGCAACGGATGAGTATATGAAAGGGGCATGGGATTTTGTGGAGAAAGTGAAAAAAGATTTCGGAGATGTCGAAACAATTATGTGCCCTTGCAAAGATTGTAGGAACATGAGTCATCAAAGATTTGATATTGTTTATGAGCATTTAGTTATCAAAGGAATGGATCCAACATATAAGACTTGGTATCATCATGGGGAGGAGGTTTTTGTAAGGGAAGAATTTGAAGACGTGATATGA

mRNA sequence

ATGTTTGACAAGGAATGGATACATCTACATAGAGCAACGGATGAGTATATGAAAGGGGCATGGGATTTTGTGGAGAAAGTGAAAAAAGATTTCGGAGATGTCGAAACAATTATGTGCCCTTGCAAAGATTGTAGGAACATGAGTCATCAAAGATTTGATATTGTTTATGAGCATTTAGTTATCAAAGGAATGGATCCAACATATAAGACTTGGTATCATCATGGGGAGGAGGTTTTTGTAAGGGAAGAATTTGAAGACGTGATATGA

Coding sequence (CDS)

ATGTTTGACAAGGAATGGATACATCTACATAGAGCAACGGATGAGTATATGAAAGGGGCATGGGATTTTGTGGAGAAAGTGAAAAAAGATTTCGGAGATGTCGAAACAATTATGTGCCCTTGCAAAGATTGTAGGAACATGAGTCATCAAAGATTTGATATTGTTTATGAGCATTTAGTTATCAAAGGAATGGATCCAACATATAAGACTTGGTATCATCATGGGGAGGAGGTTTTTGTAAGGGAAGAATTTGAAGACGTGATATGA

Protein sequence

MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLVIKGMDPTYKTWYHHGEEVFVREEFEDVI

Homology

[Close]

BLAST of Tan0005736 vs. NCBI nr
Match: KGN47253.1 (hypothetical protein Csa_017000 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 3.0e-35
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          MF+KEW+HL+RATDEYMKGAW+F+EKVKKD   V+ IMCPCKDCR+MSHQ FDIVYEHLV
Sbjct: 6  MFNKEWVHLNRATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIVYEHLV 65

Query: 61 IKGMDPTYKTWYHHGEEVFVREEFED 87
          IKGMDPTYK  YHHGEEV V+EE ED
Sbjct: 66 IKGMDPTYKILYHHGEEVCVKEEVED 91

[Close]

BLAST of Tan0005736 vs. NCBI nr
Match: KAA0055179.1 (uncharacterized protein E6C27_scaffold80G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          MF+KEW+HL+RATDEYMKG W+FVEKVKKD  DV+ IMCP KDCRNMSHQ FD+VYEHLV
Sbjct: 1  MFNKEWVHLNRATDEYMKGVWEFVEKVKKDATDVDLIMCPSKDCRNMSHQSFDVVYEHLV 60

Query: 61 IKGMDPTYKTW 72
          IKGMDPTYK W
Sbjct: 61 IKGMDPTYKIW 71

[Close]

BLAST of Tan0005736 vs. NCBI nr
Match: KAA0056266.1 (uncharacterized protein E6C27_scaffold226G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 7.2e-29
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          MF K+W+HL+RAT+EY++GAWDF+++V+   G ++ I CPCK CRNM+HQ FD+VYEHLV
Sbjct: 1  MFQKDWVHLNRATNEYLRGAWDFMKQVENMLGGIDKIPCPCKTCRNMNHQTFDVVYEHLV 60

Query: 61 IKGMDPTYKTWYHHGEEVFVREEFE 86
          IKGMDPTY+ WYHHGEEV V   F+
Sbjct: 61 IKGMDPTYRFWYHHGEEVPVECMFD 85

[Close]

BLAST of Tan0005736 vs. NCBI nr
Match: XP_024017632.1 (uncharacterized protein LOC112090485 [Morus notabilis])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          M DK+W+  +R T EYM+ A  FV+ V+K+FG  E ++CPCK+CRN+SHQR +IVYEHLV
Sbjct: 9  MLDKDWVRDNRLTVEYMQSAQKFVKTVEKNFGYPEKLLCPCKECRNLSHQRGNIVYEHLV 68

Query: 61 IKGMDPTYKTWYHHGEEVFVREEFEDV 88
          I GMDPTY TW+HHGEEV   EE E+V
Sbjct: 69 INGMDPTYTTWFHHGEEVNTNEELENV 95

[Close]

BLAST of Tan0005736 vs. NCBI nr
Match: KAF7148012.1 (hypothetical protein RHSIM_Rhsim03G0123300 [Rhododendron simsii])

HSP 1 Score: 113.6 bits (283), Expect = 8.6e-22
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          M DK+W+ L R+TDEYM  A  FV+   ++ G++  I+CPCKDCRN+SH   + VYEHLV
Sbjct: 12 MMDKDWVRLIRSTDEYMNAASSFVKMANQNVGNLGKILCPCKDCRNLSHHCLEDVYEHLV 71

Query: 61 IKGMDPTYKTWYHHGEEVFVREEFEDV 88
          IKGMDPTY TW+HHGE     E  ++V
Sbjct: 72 IKGMDPTYTTWFHHGEHPSAVENPKEV 98

[Close]

BLAST of Tan0005736 vs. ExPASy TrEMBL
Match: A0A0A0KCH8 (Transpos_assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237080 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.5e-35
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          MF+KEW+HL+RATDEYMKGAW+F+EKVKKD   V+ IMCPCKDCR+MSHQ FDIVYEHLV
Sbjct: 6  MFNKEWVHLNRATDEYMKGAWEFIEKVKKDVTYVDLIMCPCKDCRDMSHQSFDIVYEHLV 65

Query: 61 IKGMDPTYKTWYHHGEEVFVREEFED 87
          IKGMDPTYK  YHHGEEV V+EE ED
Sbjct: 66 IKGMDPTYKILYHHGEEVCVKEEVED 91

[Close]

BLAST of Tan0005736 vs. ExPASy TrEMBL
Match: A0A5A7UNZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00030 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-29
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          MF+KEW+HL+RATDEYMKG W+FVEKVKKD  DV+ IMCP KDCRNMSHQ FD+VYEHLV
Sbjct: 1  MFNKEWVHLNRATDEYMKGVWEFVEKVKKDATDVDLIMCPSKDCRNMSHQSFDVVYEHLV 60

Query: 61 IKGMDPTYKTW 72
          IKGMDPTYK W
Sbjct: 61 IKGMDPTYKIW 71

[Close]

BLAST of Tan0005736 vs. ExPASy TrEMBL
Match: A0A5A7UPM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00340 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.5e-29
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
          MF K+W+HL+RAT+EY++GAWDF+++V+   G ++ I CPCK CRNM+HQ FD+VYEHLV
Sbjct: 1  MFQKDWVHLNRATNEYLRGAWDFMKQVENMLGGIDKIPCPCKTCRNMNHQTFDVVYEHLV 60

Query: 61 IKGMDPTYKTWYHHGEEVFVREEFE 86
          IKGMDPTY+ WYHHGEEV V   F+
Sbjct: 61 IKGMDPTYRFWYHHGEEVPVECMFD 85

[Close]

BLAST of Tan0005736 vs. ExPASy TrEMBL
Match: A0A7J6GD52 (Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017112 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.1e-21
Identity = 43/77 (55.84%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1   MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHLV 60
           MFDK W+  +RA++EY +GA  FVE ++K+    E ++CPCK CRN+SHQ+ +++YEHLV
Sbjct: 39  MFDKSWLRFNRASNEYKEGARSFVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLV 98

Query: 61  IKGMDPTYKTWYHHGEE 78
           I G+DPTY  W+HHGEE
Sbjct: 99  INGIDPTYTVWFHHGEE 115

[Close]

BLAST of Tan0005736 vs. ExPASy TrEMBL
Match: A0A5A7SMK7 (Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00730 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  MFDKEWIHLHRATDEYMKGAWDFVEKVKKDFGDVETIMCPCKDCRNMSHQRFDIVYEHL 60
          MF+K+W+HL+RA DEYMKGAW+F+EKVKKD  DV+ IMCPCKDCRNMSHQ  D+VYEHL
Sbjct: 1  MFNKKWVHLNRAKDEYMKGAWEFMEKVKKDATDVDLIMCPCKDCRNMSHQSLDVVYEHL 59

The following BLAST results are available for this feature:

BLAST of Tan0005736 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005736 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47253.1	3.0e-35	80.23	hypothetical protein Csa_017000 [Cucumis sativus]	[more]
KAA0055179.1	3.3e-29	81.69	uncharacterized protein E6C27_scaffold80G00030 [Cucumis melo var. makuwa]	[more]
KAA0056266.1	7.2e-29	64.71	uncharacterized protein E6C27_scaffold226G00340 [Cucumis melo var. makuwa]	[more]
XP_024017632.1	1.7e-25	62.07	uncharacterized protein LOC112090485 [Morus notabilis]	[more]
KAF7148012.1	8.6e-22	55.17	hypothetical protein RHSIM_Rhsim03G0123300 [Rhododendron simsii]	[more]

BLAST of Tan0005736 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCH8	1.5e-35	80.23	Transpos_assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237...	[more]
A0A5A7UNZ2	1.6e-29	81.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UPM1	3.5e-29	64.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A7J6GD52	2.1e-21	55.84	Transpos_assoc domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_017...	[more]
A0A5A7SMK7	2.7e-21	76.27	Transpos_assoc domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Tan0005736 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029480	Transposase-associated domain	PFAM	PF13963	Transpos_assoc	coord: 4..76 e-value: 9.9E-21 score: 73.7
None	No IPR available	PANTHER	PTHR10775:SF149	TRANSPOSASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN-RELATED	coord: 3..78
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 3..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005736.1	Tan0005736.1	mRNA